Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46503 * 109.47146 * 240.00035 * 2 1 3 5 5 C 1.34967 * 125.97021 * 84.70603 * 4 2 1 6 6 C 1.35234 * 107.87238 * 179.87568 * 5 4 2 7 7 C 1.40446 * 107.86142 * 0.39631 * 6 5 4 8 8 N 1.39996 * 125.98023 * 179.73609 * 7 6 5 9 9 C 1.39798 * 119.99722 * 353.79073 * 8 7 6 10 10 C 1.39433 * 119.91514 * 325.10827 * 9 8 7 11 11 C 1.38358 * 120.45787 * 179.72569 * 10 9 8 12 12 C 1.38016 * 120.29128 * 0.54729 * 11 10 9 13 13 F 1.35106 * 120.08702 * 179.70562 * 12 11 10 14 14 C 1.41018 * 119.82484 * 359.72794 * 12 11 10 15 15 C 1.41286 * 120.22378 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00434 * 25.37962 * 15 14 12 17 17 C 1.39918 * 120.00230 * 205.37219 * 15 14 12 18 18 N 1.30861 * 119.99579 * 16.69860 * 17 15 14 19 19 Si 1.86794 * 120.00420 * 196.69816 * 17 15 14 20 20 H 1.48504 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47194 * 119.99825 * 19 17 15 22 22 H 1.48500 * 109.47174 * 239.99955 * 19 17 15 23 23 C 1.38187 * 119.91484 * 145.38416 * 9 8 7 24 24 N 1.31245 * 108.04265 * 359.75626 * 7 6 5 25 25 H 1.08996 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46870 * 299.99595 * 1 2 3 27 27 H 1.08996 * 109.47092 * 59.99855 * 1 2 3 28 28 H 1.08996 * 109.47597 * 120.00295 * 2 1 3 29 29 H 1.09003 * 109.46929 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46755 * 300.00516 * 3 2 1 31 31 H 1.08998 * 109.46826 * 59.99989 * 3 2 1 32 32 H 1.08000 * 126.06359 * 0.02562 * 5 4 2 33 33 H 1.07996 * 126.07177 * 180.15208 * 6 5 4 34 34 H 0.96993 * 120.00125 * 173.79424 * 8 7 6 35 35 H 1.08001 * 119.77278 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.85379 * 180.28001 * 11 10 9 37 37 H 0.96996 * 120.00107 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.14847 * 359.97233 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1876 -0.1392 -2.4164 6 6 2.6552 -1.1002 -3.2449 7 6 2.7685 -2.2888 -2.5054 8 7 3.2120 -3.5231 -2.9951 9 6 3.4674 -3.6825 -4.3602 10 6 2.6809 -3.0138 -5.2975 11 6 2.9273 -3.1590 -6.6512 12 6 3.9488 -3.9774 -7.0890 13 9 4.1820 -4.1208 -8.4121 14 6 4.7482 -4.6639 -6.1518 15 6 5.7964 -5.5034 -6.5906 16 1 6.2614 -5.3303 -7.5499 17 6 6.2324 -6.5590 -5.7823 18 7 5.4843 -6.9782 -4.7939 19 14 7.8821 -7.3699 -6.1141 20 1 8.5298 -6.7155 -7.2793 21 1 8.7530 -7.2273 -4.9197 22 1 7.6754 -8.8110 -6.4068 23 6 4.4951 -4.5067 -4.7775 24 7 2.3853 -2.0401 -1.2750 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9875 0.8881 -2.6831 33 1 2.8950 -0.9768 -4.2907 34 1 3.3421 -4.2676 -2.3872 35 1 1.8763 -2.3750 -4.9644 36 1 2.3149 -2.6330 -7.3686 37 1 5.7866 -7.7098 -4.2333 38 1 5.1015 -5.0276 -4.0513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210348604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = 53.180971 kcal Electronic energy + Delta-G solvation = -22014.681471 eV Core-core repulsion = 18579.975535 eV Total energy + Delta-G solvation = -3434.705936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.15964 -40.88040 -37.93536 -35.94270 -34.37725 -33.25799 -30.04672 -29.70241 -29.10034 -27.56619 -27.01926 -25.38032 -22.86320 -21.38862 -21.12113 -19.78031 -19.53360 -17.44592 -16.94896 -16.15857 -15.99840 -15.47207 -15.00004 -14.93075 -14.40488 -14.26542 -13.93497 -13.41734 -13.14388 -13.04165 -12.75821 -12.61921 -12.47617 -12.31747 -11.95052 -11.72563 -11.58736 -11.51059 -11.23582 -11.16973 -11.05577 -10.66200 -10.24339 -10.17725 -9.91139 -9.51631 -9.27514 -8.46693 -7.90716 -7.60100 -6.92402 -6.42859 -4.46261 2.22304 2.57117 2.65023 2.77305 3.05393 3.10049 3.12724 3.54105 3.88823 4.04185 4.43901 4.51986 4.70888 4.87375 4.96481 5.21348 5.33782 5.42543 5.43653 5.53241 5.65193 5.91249 5.92874 5.96589 6.05157 6.15670 6.20871 6.49679 6.68935 6.88378 6.98727 7.10398 7.15713 7.39725 7.53584 7.66084 7.74549 7.94688 7.99976 8.28559 8.49980 8.63920 8.70655 8.84060 10.08017 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.003701 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.397021 B = 7563.069027 C = 8337.004751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 C -0.163 4.163 4 N -0.377 5.377 5 C 0.065 3.935 6 C -0.292 4.292 7 C 0.342 3.658 8 N -0.650 5.650 9 C 0.180 3.820 10 C -0.247 4.247 11 C -0.102 4.102 12 C -0.044 4.044 13 F -0.165 7.165 14 C 0.107 3.893 15 C -0.451 4.451 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.912 3.088 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.177 4.177 24 N -0.360 5.360 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.407 0.593 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.282 0.718 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 11.753 8.782 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 C -0.222 4.222 4 N -0.161 5.161 5 C -0.081 4.081 6 C -0.323 4.323 7 C 0.084 3.916 8 N -0.280 5.280 9 C 0.085 3.915 10 C -0.269 4.269 11 C -0.122 4.122 12 C -0.064 4.064 13 F -0.144 7.144 14 C 0.102 3.898 15 C -0.480 4.480 16 H 0.103 0.897 17 C -0.142 4.142 18 N -0.413 5.413 19 Si 0.736 3.264 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.200 4.200 24 N -0.191 5.191 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.174 0.826 34 H 0.243 0.757 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.866 11.246 10.087 16.206 hybrid contribution 0.801 -0.434 -0.854 1.248 sum -5.065 10.812 9.234 15.094 Atomic orbital electron populations 1.22248 0.94261 1.03196 1.02555 1.21049 0.94296 0.92308 0.86326 1.22185 1.02349 0.94379 1.03245 1.48189 1.53334 1.06761 1.07797 1.22242 1.01002 0.99300 0.85534 1.21501 1.16841 0.91590 1.02403 1.19275 0.93893 0.87544 0.90861 1.41185 1.71579 1.08550 1.06694 1.17460 0.95062 0.98478 0.80456 1.20173 1.04602 1.10692 0.91473 1.20310 0.97412 0.99137 0.95324 1.17849 1.02269 1.09397 0.76935 1.91265 1.94695 1.95577 1.32860 1.17341 0.91301 0.90728 0.90383 1.19543 1.14656 1.09748 1.04050 0.89749 1.25917 0.98245 0.96279 0.93778 1.69824 1.34992 1.21855 1.14597 0.86190 0.81500 0.79002 0.79705 1.18209 1.19597 1.19846 1.20853 0.98824 1.04520 0.95799 1.77370 1.30100 0.93706 1.17965 0.91674 0.90986 0.92044 0.88493 0.91518 0.91621 0.90374 0.81694 0.82619 0.75726 0.87284 0.87881 0.90694 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.52 37.16 0.35 -1.05 16 2 C 0.16 1.63 3.93 -67.93 -0.27 1.36 16 3 C -0.16 -1.17 8.84 37.16 0.33 -0.84 16 4 N -0.38 -5.39 3.52 -54.88 -0.19 -5.59 16 5 C 0.06 0.89 10.58 -17.24 -0.18 0.71 16 6 C -0.29 -5.01 8.68 -39.82 -0.35 -5.35 16 7 C 0.34 6.55 7.89 -154.51 -1.22 5.34 16 8 N -0.65 -13.21 5.53 -9.70 -0.05 -13.27 16 9 C 0.18 4.08 6.25 -83.80 -0.52 3.56 16 10 C -0.25 -5.37 7.82 -39.09 -0.31 -5.68 16 11 C -0.10 -2.29 10.00 -39.62 -0.40 -2.69 16 12 C -0.04 -1.11 7.31 -38.61 -0.28 -1.39 16 13 F -0.16 -4.16 16.72 2.25 0.04 -4.12 16 14 C 0.11 2.82 5.57 -106.79 -0.59 2.23 16 15 C -0.45 -11.97 8.77 -37.80 -0.33 -12.31 16 16 H 0.08 2.22 7.74 -52.49 -0.41 1.82 16 17 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 18 N -0.79 -19.72 10.95 55.55 0.61 -19.11 16 19 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.18 -4.43 8.59 -38.70 -0.33 -4.76 16 24 N -0.36 -6.52 12.59 31.42 0.40 -6.13 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.42 7.15 -51.93 -0.37 0.05 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 1.61 7.26 -52.49 -0.38 1.23 16 33 H 0.16 2.72 6.05 -52.49 -0.32 2.40 16 34 H 0.41 7.87 8.94 -40.82 -0.37 7.51 16 35 H 0.11 2.18 5.96 -52.49 -0.31 1.87 16 36 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 38 H 0.13 3.30 6.18 -52.49 -0.32 2.98 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -29.17 323.61 -8.12 -37.28 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -4.57 Total: 11.65 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -4.19 Total: -19.08 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.76 Total: -44.09 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.17 -8.12 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210348604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.466 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds