Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46503 * 109.47146 * 240.00035 * 2 1 3 5 5 C 1.34967 * 125.97021 * 84.70603 * 4 2 1 6 6 C 1.35234 * 107.87238 * 179.87568 * 5 4 2 7 7 C 1.40446 * 107.86142 * 0.39631 * 6 5 4 8 8 N 1.39996 * 125.98023 * 179.73609 * 7 6 5 9 9 C 1.39798 * 119.99722 * 353.79073 * 8 7 6 10 10 C 1.39433 * 119.91514 * 325.10827 * 9 8 7 11 11 C 1.38358 * 120.45787 * 179.72569 * 10 9 8 12 12 C 1.38016 * 120.29128 * 0.54729 * 11 10 9 13 13 F 1.35106 * 120.08702 * 179.70562 * 12 11 10 14 14 C 1.41018 * 119.82484 * 359.72794 * 12 11 10 15 15 C 1.41286 * 120.22378 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00434 * 25.37962 * 15 14 12 17 17 C 1.39918 * 120.00230 * 205.37219 * 15 14 12 18 18 N 1.30861 * 119.99579 * 16.69860 * 17 15 14 19 19 Si 1.86794 * 120.00420 * 196.69816 * 17 15 14 20 20 H 1.48504 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47194 * 119.99825 * 19 17 15 22 22 H 1.48500 * 109.47174 * 239.99955 * 19 17 15 23 23 C 1.38187 * 119.91484 * 145.38416 * 9 8 7 24 24 N 1.31245 * 108.04265 * 359.75626 * 7 6 5 25 25 H 1.08996 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46870 * 299.99595 * 1 2 3 27 27 H 1.08996 * 109.47092 * 59.99855 * 1 2 3 28 28 H 1.08996 * 109.47597 * 120.00295 * 2 1 3 29 29 H 1.09003 * 109.46929 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46755 * 300.00516 * 3 2 1 31 31 H 1.08998 * 109.46826 * 59.99989 * 3 2 1 32 32 H 1.08000 * 126.06359 * 0.02562 * 5 4 2 33 33 H 1.07996 * 126.07177 * 180.15208 * 6 5 4 34 34 H 0.96993 * 120.00125 * 173.79424 * 8 7 6 35 35 H 1.08001 * 119.77278 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.85379 * 180.28001 * 11 10 9 37 37 H 0.96996 * 120.00107 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.14847 * 359.97233 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1876 -0.1392 -2.4164 6 6 2.6552 -1.1002 -3.2449 7 6 2.7685 -2.2888 -2.5054 8 7 3.2120 -3.5231 -2.9951 9 6 3.4674 -3.6825 -4.3602 10 6 2.6809 -3.0138 -5.2975 11 6 2.9273 -3.1590 -6.6512 12 6 3.9488 -3.9774 -7.0890 13 9 4.1820 -4.1208 -8.4121 14 6 4.7482 -4.6639 -6.1518 15 6 5.7964 -5.5034 -6.5906 16 1 6.2614 -5.3303 -7.5499 17 6 6.2324 -6.5590 -5.7823 18 7 5.4843 -6.9782 -4.7939 19 14 7.8821 -7.3699 -6.1141 20 1 8.5298 -6.7155 -7.2793 21 1 8.7530 -7.2273 -4.9197 22 1 7.6754 -8.8110 -6.4068 23 6 4.4951 -4.5067 -4.7775 24 7 2.3853 -2.0401 -1.2750 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9875 0.8881 -2.6831 33 1 2.8950 -0.9768 -4.2907 34 1 3.3421 -4.2676 -2.3872 35 1 1.8763 -2.3750 -4.9644 36 1 2.3149 -2.6330 -7.3686 37 1 5.7866 -7.7098 -4.2333 38 1 5.1015 -5.0276 -4.0513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210348604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = 37.898693 kcal Electronic energy + Delta-G solvation = -22015.344160 eV Core-core repulsion = 18579.975535 eV Total energy + Delta-G solvation = -3435.368625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.10795 -42.13380 -39.66523 -37.16267 -35.89111 -34.92408 -31.77300 -31.16456 -30.39458 -28.69752 -28.11143 -27.25082 -24.08926 -23.03893 -22.74770 -21.20600 -20.77219 -19.20580 -18.21970 -17.82278 -17.70275 -16.91057 -16.66586 -16.29716 -15.89924 -15.85240 -15.27090 -14.85589 -14.49809 -14.40597 -14.17840 -13.88709 -13.66616 -13.36670 -13.32649 -13.18531 -13.06392 -12.81799 -12.74608 -12.45521 -12.26946 -12.03195 -12.00946 -11.56474 -11.44292 -11.29976 -11.06980 -9.86035 -9.49553 -9.36533 -8.75512 -8.11120 -6.43373 0.71892 0.90205 1.14543 1.37778 1.47091 1.49450 1.53281 2.09518 2.19492 2.62252 2.67453 3.52243 3.66515 3.99081 4.01343 4.10627 4.17279 4.30566 4.41921 4.68955 4.70357 4.71951 4.82408 4.84985 4.89962 4.98364 5.00112 5.08895 5.21383 5.22819 5.28056 5.37510 5.48207 5.71834 5.84674 5.97859 6.04585 6.28343 6.35391 6.56407 6.77279 6.79923 6.86403 7.17280 8.25705 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.003701 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.397021 B = 7563.069027 C = 8337.004751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 C -0.156 4.156 4 N -0.368 5.368 5 C 0.092 3.908 6 C -0.325 4.325 7 C 0.316 3.684 8 N -0.655 5.655 9 C 0.191 3.809 10 C -0.236 4.236 11 C -0.092 4.092 12 C -0.077 4.077 13 F -0.171 7.171 14 C 0.081 3.919 15 C -0.491 4.491 16 H 0.073 0.927 17 C 0.039 3.961 18 N -0.814 5.814 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.260 1.260 22 H -0.263 1.263 23 C -0.197 4.197 24 N -0.385 5.385 25 H 0.040 0.960 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.214 0.786 33 H 0.150 0.850 34 H 0.407 0.593 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.291 0.709 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 14.080 10.054 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 C -0.214 4.214 4 N -0.151 5.151 5 C -0.056 4.056 6 C -0.357 4.357 7 C 0.060 3.940 8 N -0.285 5.285 9 C 0.095 3.905 10 C -0.258 4.258 11 C -0.112 4.112 12 C -0.098 4.098 13 F -0.150 7.150 14 C 0.077 3.923 15 C -0.520 4.520 16 H 0.091 0.909 17 C -0.177 4.177 18 N -0.439 5.439 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.188 1.188 23 C -0.220 4.220 24 N -0.217 5.217 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.231 0.769 33 H 0.168 0.832 34 H 0.242 0.758 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.873 13.593 11.408 19.030 hybrid contribution 0.938 -0.981 -1.055 1.719 sum -5.935 12.612 10.352 17.362 Atomic orbital electron populations 1.22211 0.92767 1.02193 1.04417 1.21548 0.95449 0.93644 0.84479 1.22187 1.01703 0.92180 1.05370 1.48670 1.51602 1.05491 1.09366 1.22826 0.97899 1.00502 0.84339 1.21569 1.19416 0.91862 1.02810 1.19457 0.95244 0.87464 0.91818 1.41072 1.72059 1.09551 1.05795 1.17503 0.93970 0.97213 0.81840 1.20428 1.04390 1.09994 0.90989 1.20622 0.96386 0.97939 0.96233 1.18132 1.03762 1.11160 0.76729 1.91230 1.94899 1.95792 1.33103 1.17672 0.91927 0.91372 0.91337 1.19699 1.16199 1.11505 1.04570 0.90913 1.26719 1.01507 0.96218 0.93247 1.69855 1.36473 1.22376 1.15194 0.85129 0.76727 0.78109 0.79619 1.18462 1.18473 1.18757 1.20745 1.00088 1.06022 0.95146 1.77274 1.30287 0.96398 1.17743 0.94082 0.87917 0.91400 0.89002 0.92507 0.90197 0.87603 0.76948 0.83239 0.75787 0.84994 0.84731 0.89771 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.52 71.98 0.69 -1.49 16 2 C 0.15 2.53 3.93 44.99 0.18 2.71 16 3 C -0.16 -1.57 8.84 71.98 0.64 -0.93 16 4 N -0.37 -9.67 3.52 -327.54 -1.15 -10.82 16 5 C 0.09 2.24 10.58 83.52 0.88 3.12 16 6 C -0.32 -10.68 8.68 22.11 0.19 -10.49 16 7 C 0.32 12.04 7.89 133.38 1.05 13.09 16 8 N -0.65 -27.20 5.53 -184.61 -1.02 -28.22 16 9 C 0.19 8.82 6.25 38.15 0.24 9.06 16 10 C -0.24 -10.14 7.82 22.59 0.18 -9.96 16 11 C -0.09 -4.10 10.00 22.25 0.22 -3.88 16 12 C -0.08 -4.00 7.31 22.90 0.17 -3.83 16 13 F -0.17 -8.87 16.72 44.97 0.75 -8.12 16 14 C 0.08 4.46 5.57 -21.27 -0.12 4.35 16 15 C -0.49 -27.30 8.77 23.43 0.21 -27.09 16 16 H 0.07 4.05 7.74 -2.91 -0.02 4.03 16 17 C 0.04 1.99 5.16 85.24 0.44 2.43 16 18 N -0.81 -42.04 10.95 21.82 0.24 -41.80 16 19 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 C -0.20 -10.28 8.59 22.84 0.20 -10.08 16 24 N -0.39 -13.73 12.59 -54.52 -0.69 -14.41 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.61 7.15 -2.38 -0.02 0.59 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.21 3.01 7.26 -2.91 -0.02 2.99 16 33 H 0.15 5.03 6.05 -2.91 -0.02 5.01 16 34 H 0.41 16.40 8.94 -92.71 -0.83 15.57 16 35 H 0.13 5.07 5.96 -2.91 -0.02 5.05 16 36 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 38 H 0.11 6.19 6.18 -2.91 -0.02 6.17 16 Total: -1.00 -66.52 323.61 5.58 -60.94 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.27 Total: 34.72 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 5.15 Total: -32.99 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -2.62 Total: -95.26 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 0.75 Total: -8.12 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -66.52 5.58 -60.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210348604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.841 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds