Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47422 * 120.00156 * 2 1 3 5 5 N 1.40070 * 126.09520 * 300.02632 * 4 2 1 6 6 C 1.30827 * 108.42645 * 179.97438 * 5 4 2 7 7 C 1.39727 * 108.44947 * 359.97438 * 6 5 4 8 8 C 1.35827 * 126.09091 * 119.70979 * 4 2 1 9 9 N 1.39227 * 126.27412 * 0.03451 * 8 4 2 10 10 C 1.39793 * 120.00239 * 186.14207 * 9 8 4 11 11 C 1.39435 * 119.91927 * 34.15537 * 10 9 8 12 12 C 1.38349 * 120.46798 * 179.97438 * 11 10 9 13 13 C 1.38022 * 120.29113 * 359.97438 * 12 11 10 14 14 F 1.35100 * 120.08877 * 179.97438 * 13 12 11 15 15 C 1.41019 * 119.81996 * 0.02562 * 13 12 11 16 16 C 1.41298 * 120.22402 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99770 * 25.07590 * 16 15 13 18 18 C 1.39905 * 119.99999 * 205.07083 * 16 15 13 19 19 N 1.30861 * 120.00152 * 16.96541 * 18 16 15 20 20 Si 1.86802 * 119.99898 * 196.96521 * 18 16 15 21 21 H 1.48496 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46968 * 120.00448 * 20 18 16 23 23 H 1.48506 * 109.47010 * 239.99797 * 20 18 16 24 24 C 1.38192 * 119.91909 * 213.87263 * 10 9 8 25 25 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46915 * 59.99620 * 1 2 3 27 27 H 1.09002 * 109.46579 * 300.00167 * 1 2 3 28 28 H 1.09008 * 109.47101 * 240.00567 * 2 1 3 29 29 H 1.09002 * 109.47469 * 60.00378 * 3 2 1 30 30 H 1.09007 * 109.47559 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47550 * 300.00004 * 3 2 1 32 32 H 1.08005 * 125.77479 * 180.02562 * 6 5 4 33 33 H 1.08001 * 126.07832 * 180.02562 * 7 6 5 34 34 H 0.97006 * 119.99806 * 6.14856 * 9 8 4 35 35 H 1.08000 * 119.76204 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.85514 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99832 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.14380 * 0.02675 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7595 -0.3254 2.5233 6 6 2.3620 -1.1780 3.3118 7 6 3.0267 -2.1185 2.5207 8 6 2.7980 -1.8027 1.2156 9 7 3.2779 -2.4919 0.1051 10 6 3.9652 -3.6974 0.2739 11 6 3.6073 -4.5633 1.3065 12 6 4.2795 -5.7595 1.4836 13 6 5.3130 -6.1091 0.6382 14 9 5.9669 -7.2780 0.8153 15 6 5.6851 -5.2425 -0.4101 16 6 6.7415 -5.5921 -1.2809 17 1 6.9973 -6.6307 -1.4297 18 6 7.4560 -4.5928 -1.9504 19 7 7.3874 -3.3523 -1.5395 20 14 8.5081 -5.0294 -3.4310 21 1 8.4160 -6.4885 -3.6907 22 1 8.0230 -4.2838 -4.6200 23 1 9.9213 -4.6626 -3.1594 24 6 4.9939 -4.0306 -0.5866 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.3473 -1.1586 4.3916 33 1 3.6141 -2.9505 2.8800 34 1 3.1354 -2.1354 -0.7857 35 1 2.7996 -4.2984 1.9727 36 1 3.9938 -6.4230 2.2864 37 1 7.8831 -2.6596 -2.0034 38 1 5.2682 -3.3616 -1.3888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210523616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = 50.940570 kcal Electronic energy + Delta-G solvation = -22462.232407 eV Core-core repulsion = 19027.429320 eV Total energy + Delta-G solvation = -3434.803087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.23400 -40.89205 -37.93520 -35.53167 -34.97960 -33.47728 -30.08249 -29.87460 -28.74915 -27.36732 -27.02879 -25.42026 -22.83881 -21.69808 -21.23972 -19.80064 -19.42866 -17.73131 -17.34208 -16.13794 -15.79356 -15.05979 -14.98809 -14.78021 -14.56317 -14.23234 -13.99572 -13.60671 -13.09358 -12.94892 -12.74887 -12.66327 -12.35089 -12.08373 -12.02152 -11.77256 -11.63666 -11.41864 -11.34255 -11.23952 -11.11278 -10.63120 -10.33527 -10.22243 -10.05498 -9.57796 -9.33036 -8.62347 -7.81834 -7.67920 -6.95476 -6.53976 -4.53943 2.23400 2.57063 2.62360 2.78657 2.99887 3.04854 3.07821 3.43362 3.80577 3.82821 4.42485 4.48885 4.86204 4.91977 5.21469 5.35358 5.42697 5.54535 5.60514 5.64582 5.81329 5.88893 5.97835 6.06226 6.10246 6.17726 6.42033 6.50436 6.61261 6.79389 6.96685 7.06446 7.11083 7.19072 7.45666 7.59785 7.67635 7.84720 7.99230 8.16334 8.31173 8.47108 8.62652 8.72322 10.00539 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.004723 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.599941 B = 5927.163211 C = 7063.883324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 C -0.159 4.159 4 N -0.399 5.399 5 N -0.317 5.317 6 C 0.068 3.932 7 C -0.335 4.335 8 C 0.364 3.636 9 N -0.661 5.661 10 C 0.175 3.825 11 C -0.244 4.244 12 C -0.102 4.102 13 C -0.040 4.040 14 F -0.163 7.163 15 C 0.106 3.894 16 C -0.451 4.451 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.786 5.786 20 Si 0.912 3.088 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.399 0.601 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.282 0.718 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 6.755 0.189 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 C -0.217 4.217 4 N -0.189 5.189 5 N -0.139 5.139 6 C -0.118 4.118 7 C -0.369 4.369 8 C 0.141 3.859 9 N -0.288 5.288 10 C 0.081 3.919 11 C -0.266 4.266 12 C -0.121 4.121 13 C -0.061 4.061 14 F -0.143 7.143 15 C 0.102 3.898 16 C -0.480 4.480 17 H 0.103 0.897 18 C -0.143 4.143 19 N -0.411 5.411 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.199 4.199 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.173 0.827 34 H 0.234 0.766 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.948 7.986 0.060 11.994 hybrid contribution 1.175 -0.826 -0.971 1.733 sum -7.774 7.160 -0.911 10.608 Atomic orbital electron populations 1.22102 0.93655 1.02800 1.02993 1.21061 0.95299 0.93748 0.84027 1.22112 1.01868 0.94715 1.02972 1.48699 1.42291 1.22304 1.05637 1.77215 1.26757 1.24610 0.85284 1.23475 0.95898 0.92938 0.99527 1.21022 1.17028 1.09195 0.89642 1.18158 0.91458 0.86626 0.89697 1.41300 1.60020 1.22763 1.04733 1.17395 0.92684 0.83716 0.98142 1.20207 1.05993 0.95850 1.04501 1.20332 0.96135 0.96919 0.98757 1.17865 1.00209 0.86650 1.01341 1.91271 1.81171 1.46475 1.95347 1.17335 0.92212 0.90420 0.89863 1.19553 1.12625 0.94875 1.20906 0.89658 1.25927 0.96437 0.94350 0.97542 1.69838 1.34184 1.01749 1.35314 0.86190 0.79317 0.80354 0.80568 1.18149 1.19612 1.19778 1.20800 0.95254 1.00569 1.03283 0.92215 0.91154 0.91100 0.89317 0.91099 0.92103 0.91156 0.80684 0.82729 0.76643 0.86797 0.87674 0.90678 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.45 37.16 0.35 -1.31 16 2 C 0.16 1.97 3.70 -67.94 -0.25 1.72 16 3 C -0.16 -1.73 9.45 37.15 0.35 -1.38 16 4 N -0.40 -6.31 3.30 -53.81 -0.18 -6.49 16 5 N -0.32 -5.21 12.42 30.59 0.38 -4.83 16 6 C 0.07 1.06 12.00 -17.42 -0.21 0.86 16 7 C -0.34 -5.99 8.71 -39.76 -0.35 -6.34 16 8 C 0.36 6.51 7.49 -152.85 -1.14 5.36 16 9 N -0.66 -12.08 5.49 -9.92 -0.05 -12.13 16 10 C 0.17 3.75 6.26 -83.80 -0.52 3.22 16 11 C -0.24 -5.12 7.83 -39.09 -0.31 -5.43 16 12 C -0.10 -2.23 10.00 -39.62 -0.40 -2.62 16 13 C -0.04 -0.99 7.31 -38.61 -0.28 -1.27 16 14 F -0.16 -4.04 16.71 2.25 0.04 -4.01 16 15 C 0.11 2.72 5.57 -106.78 -0.59 2.12 16 16 C -0.45 -11.65 8.77 -37.80 -0.33 -11.98 16 17 H 0.09 2.19 7.74 -52.49 -0.41 1.79 16 18 C 0.08 1.83 5.15 -17.34 -0.09 1.74 16 19 N -0.79 -19.27 10.96 55.55 0.61 -18.66 16 20 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.18 -4.22 8.59 -38.70 -0.33 -4.56 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.00 6.86 -51.92 -0.36 0.64 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.18 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.16 2.87 5.92 -52.49 -0.31 2.56 16 34 H 0.40 6.40 7.69 -40.82 -0.31 6.09 16 35 H 0.11 2.23 5.89 -52.49 -0.31 1.92 16 36 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.13 3.12 6.19 -52.48 -0.32 2.79 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -27.89 323.62 -8.00 -35.89 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.54 Total: 12.29 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -4.11 Total: -19.86 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.76 Total: -42.12 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.89 -8.00 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210523616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.833 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds