Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47422 * 120.00156 * 2 1 3 5 5 N 1.40070 * 126.09520 * 300.02632 * 4 2 1 6 6 C 1.30827 * 108.42645 * 179.97438 * 5 4 2 7 7 C 1.39727 * 108.44947 * 359.97438 * 6 5 4 8 8 C 1.35827 * 126.09091 * 119.70979 * 4 2 1 9 9 N 1.39227 * 126.27412 * 0.03451 * 8 4 2 10 10 C 1.39793 * 120.00239 * 186.14207 * 9 8 4 11 11 C 1.39435 * 119.91927 * 34.15537 * 10 9 8 12 12 C 1.38349 * 120.46798 * 179.97438 * 11 10 9 13 13 C 1.38022 * 120.29113 * 359.97438 * 12 11 10 14 14 F 1.35100 * 120.08877 * 179.97438 * 13 12 11 15 15 C 1.41019 * 119.81996 * 0.02562 * 13 12 11 16 16 C 1.41298 * 120.22402 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99770 * 25.07590 * 16 15 13 18 18 C 1.39905 * 119.99999 * 205.07083 * 16 15 13 19 19 N 1.30861 * 120.00152 * 16.96541 * 18 16 15 20 20 Si 1.86802 * 119.99898 * 196.96521 * 18 16 15 21 21 H 1.48496 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46968 * 120.00448 * 20 18 16 23 23 H 1.48506 * 109.47010 * 239.99797 * 20 18 16 24 24 C 1.38192 * 119.91909 * 213.87263 * 10 9 8 25 25 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46915 * 59.99620 * 1 2 3 27 27 H 1.09002 * 109.46579 * 300.00167 * 1 2 3 28 28 H 1.09008 * 109.47101 * 240.00567 * 2 1 3 29 29 H 1.09002 * 109.47469 * 60.00378 * 3 2 1 30 30 H 1.09007 * 109.47559 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47550 * 300.00004 * 3 2 1 32 32 H 1.08005 * 125.77479 * 180.02562 * 6 5 4 33 33 H 1.08001 * 126.07832 * 180.02562 * 7 6 5 34 34 H 0.97006 * 119.99806 * 6.14856 * 9 8 4 35 35 H 1.08000 * 119.76204 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.85514 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99832 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.14380 * 0.02675 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7595 -0.3254 2.5233 6 6 2.3620 -1.1780 3.3118 7 6 3.0267 -2.1185 2.5207 8 6 2.7980 -1.8027 1.2156 9 7 3.2779 -2.4919 0.1051 10 6 3.9652 -3.6974 0.2739 11 6 3.6073 -4.5633 1.3065 12 6 4.2795 -5.7595 1.4836 13 6 5.3130 -6.1091 0.6382 14 9 5.9669 -7.2780 0.8153 15 6 5.6851 -5.2425 -0.4101 16 6 6.7415 -5.5921 -1.2809 17 1 6.9973 -6.6307 -1.4297 18 6 7.4560 -4.5928 -1.9504 19 7 7.3874 -3.3523 -1.5395 20 14 8.5081 -5.0294 -3.4310 21 1 8.4160 -6.4885 -3.6907 22 1 8.0230 -4.2838 -4.6200 23 1 9.9213 -4.6626 -3.1594 24 6 4.9939 -4.0306 -0.5866 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.3473 -1.1586 4.3916 33 1 3.6141 -2.9505 2.8800 34 1 3.1354 -2.1354 -0.7857 35 1 2.7996 -4.2984 1.9727 36 1 3.9938 -6.4230 2.2864 37 1 7.8831 -2.6596 -2.0034 38 1 5.2682 -3.3616 -1.3888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210523616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = 37.573437 kcal Electronic energy + Delta-G solvation = -22462.812049 eV Core-core repulsion = 19027.429320 eV Total energy + Delta-G solvation = -3435.382730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.13752 -42.19378 -39.63581 -36.63001 -36.54606 -35.21437 -31.77324 -31.29619 -30.18048 -28.59958 -28.21785 -27.24895 -23.99051 -23.39524 -22.87157 -21.27559 -20.72488 -19.28919 -18.79679 -17.96301 -17.52093 -16.75105 -16.40995 -16.00704 -15.92122 -15.91065 -15.42259 -14.89997 -14.71487 -14.46052 -14.07201 -13.92530 -13.73098 -13.56888 -13.39498 -13.14028 -13.04162 -12.80878 -12.77447 -12.37710 -12.31531 -12.25462 -12.03373 -11.86606 -11.40495 -11.32654 -11.06544 -9.91600 -9.52506 -9.35644 -8.73779 -8.14533 -6.45317 0.62902 0.87501 1.24702 1.34964 1.38182 1.49277 1.53291 2.08011 2.18725 2.43602 2.64196 3.49670 3.50120 3.95056 4.01213 4.08522 4.14924 4.28345 4.41059 4.62869 4.66307 4.67642 4.78494 4.80085 4.86599 4.97212 5.01432 5.09448 5.19343 5.20128 5.21848 5.35328 5.56697 5.69628 5.84933 5.92612 5.98921 6.07090 6.28260 6.58243 6.73580 6.76681 6.84537 7.02300 8.23561 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.004723 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.599941 B = 5927.163211 C = 7063.883324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 C -0.152 4.152 4 N -0.394 5.394 5 N -0.323 5.323 6 C 0.070 3.930 7 C -0.352 4.352 8 C 0.346 3.654 9 N -0.657 5.657 10 C 0.186 3.814 11 C -0.235 4.235 12 C -0.095 4.095 13 C -0.075 4.075 14 F -0.171 7.171 15 C 0.080 3.920 16 C -0.490 4.490 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.813 5.813 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.257 1.257 23 H -0.265 1.265 24 C -0.191 4.191 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.210 0.790 33 H 0.145 0.855 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.292 0.708 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 8.142 -0.084 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 C -0.209 4.209 4 N -0.184 5.184 5 N -0.145 5.145 6 C -0.116 4.116 7 C -0.386 4.386 8 C 0.122 3.878 9 N -0.285 5.285 10 C 0.091 3.909 11 C -0.256 4.256 12 C -0.114 4.114 13 C -0.095 4.095 14 F -0.150 7.150 15 C 0.076 3.924 16 C -0.518 4.518 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.438 5.438 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.190 1.190 24 C -0.214 4.214 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.226 0.774 33 H 0.163 0.837 34 H 0.245 0.755 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.083 9.413 -0.207 13.796 hybrid contribution 1.394 -1.157 -0.777 1.971 sum -8.690 8.256 -0.984 12.027 Atomic orbital electron populations 1.22052 0.92091 1.02458 1.04103 1.21501 0.96590 0.94330 0.83056 1.22071 1.00790 0.93942 1.04135 1.49021 1.41392 1.21589 1.06382 1.77192 1.26779 1.24808 0.85705 1.23967 0.94789 0.91778 1.01045 1.21147 1.17522 1.09685 0.90217 1.18247 0.92429 0.87665 0.89470 1.41093 1.59776 1.22010 1.05621 1.17392 0.91711 0.84633 0.97184 1.20460 1.05826 0.95157 1.04182 1.20629 0.94853 0.97415 0.98520 1.18169 1.01858 0.86950 1.02556 1.91233 1.81546 1.46806 1.95453 1.17680 0.92793 0.91490 0.90458 1.19695 1.14191 0.94867 1.23092 0.90959 1.26682 0.97195 0.93921 0.99647 1.69861 1.34966 1.02586 1.36374 0.85148 0.77664 0.79788 0.77116 1.18567 1.18161 1.19022 1.20710 0.96324 1.00278 1.04120 0.93232 0.88089 0.91918 0.88366 0.91877 0.93662 0.88037 0.77392 0.83706 0.75521 0.84826 0.84924 0.89765 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.45 71.98 0.68 -2.09 16 2 C 0.15 3.27 3.70 44.99 0.17 3.44 16 3 C -0.15 -2.97 9.45 71.98 0.68 -2.29 16 4 N -0.39 -11.82 3.30 -324.15 -1.07 -12.89 16 5 N -0.32 -10.00 12.42 -57.12 -0.71 -10.71 16 6 C 0.07 2.06 12.00 85.20 1.02 3.08 16 7 C -0.35 -12.09 8.71 22.16 0.19 -11.90 16 8 C 0.35 11.92 7.49 131.25 0.98 12.90 16 9 N -0.66 -23.51 5.49 -185.29 -1.02 -24.53 16 10 C 0.19 7.97 6.26 38.15 0.24 8.21 16 11 C -0.23 -9.65 7.83 22.58 0.18 -9.47 16 12 C -0.09 -4.10 10.00 22.24 0.22 -3.88 16 13 C -0.07 -3.77 7.31 22.90 0.17 -3.60 16 14 F -0.17 -8.72 16.71 44.97 0.75 -7.97 16 15 C 0.08 4.23 5.57 -21.26 -0.12 4.11 16 16 C -0.49 -26.28 8.77 23.43 0.21 -26.07 16 17 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.04 2.05 5.15 85.24 0.44 2.48 16 19 N -0.81 -40.42 10.96 21.82 0.24 -40.19 16 20 Si 0.98 37.05 29.59 68.60 2.03 39.08 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 23 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 24 C -0.19 -9.36 8.59 22.84 0.20 -9.17 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 2.00 6.86 -2.38 -0.02 1.99 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.21 4.43 8.06 -2.91 -0.02 4.40 16 33 H 0.15 5.22 5.92 -2.91 -0.02 5.20 16 34 H 0.41 12.80 7.69 -92.70 -0.71 12.09 16 35 H 0.13 4.98 5.89 -2.91 -0.02 4.96 16 36 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 38 H 0.12 5.93 6.19 -2.91 -0.02 5.92 16 Total: -1.00 -61.13 323.62 5.86 -55.27 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.38 Total: 36.18 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 5.25 Total: -34.26 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -2.56 Total: -88.31 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.75 Total: -7.97 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -61.13 5.86 -55.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210523616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.840 kcal (2) G-P(sol) polarization free energy of solvation -61.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds