Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.57276 * 2 1 4 4 C 1.53194 * 109.56969 * 239.74821 * 2 1 3 5 5 C 1.50682 * 109.08562 * 183.40307 * 4 2 1 6 6 O 1.21542 * 119.71000 * 208.92842 * 5 4 2 7 7 C 1.39825 * 120.59096 * 28.91465 * 5 4 2 8 8 C 1.35085 * 121.68937 * 0.06149 * 7 5 4 9 9 N 1.36336 * 119.41818 * 180.26784 * 8 7 5 10 10 C 1.39828 * 119.99843 * 120.45366 * 9 8 7 11 11 C 1.39420 * 119.91394 * 351.38655 * 10 9 8 12 12 C 1.38359 * 120.46258 * 179.72467 * 11 10 9 13 13 C 1.38019 * 120.29179 * 0.55155 * 12 11 10 14 14 F 1.35095 * 120.08950 * 179.74660 * 13 12 11 15 15 C 1.41024 * 119.82058 * 359.72797 * 13 12 11 16 16 C 1.41295 * 120.22562 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00186 * 334.94651 * 16 15 13 18 18 C 1.39919 * 120.00025 * 154.94252 * 16 15 13 19 19 N 1.30847 * 119.99913 * 345.08304 * 18 16 15 20 20 Si 1.86799 * 120.00147 * 165.08657 * 18 16 15 21 21 H 1.48507 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47239 * 119.99824 * 20 18 16 23 23 H 1.48499 * 109.47006 * 239.99869 * 20 18 16 24 24 C 1.38196 * 119.91771 * 171.66461 * 10 9 8 25 25 C 1.50545 * 121.16393 * 0.54935 * 8 7 5 26 26 H 1.08996 * 109.47193 * 180.25004 * 1 2 3 27 27 H 1.09005 * 109.46989 * 300.25142 * 1 2 3 28 28 H 1.09006 * 109.46999 * 60.24852 * 1 2 3 29 29 H 1.09005 * 109.53675 * 63.52657 * 4 2 1 30 30 H 1.09001 * 109.60699 * 303.33145 * 4 2 1 31 31 H 1.08005 * 119.15945 * 180.09639 * 7 5 4 32 32 H 0.97001 * 120.00332 * 300.44483 * 9 8 7 33 33 H 1.08000 * 119.77031 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.85399 * 180.26167 * 12 11 10 35 35 H 0.96997 * 120.00498 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.14533 * 0.02562 * 24 10 9 37 37 H 1.08998 * 109.46934 * 90.08923 * 25 8 7 38 38 H 1.09001 * 109.47367 * 210.09370 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0432 -0.7272 -1.2469 5 6 3.5476 -0.7942 -1.1940 6 8 4.1859 -0.8255 -2.2279 7 6 4.2160 -0.8205 0.0338 8 6 3.5469 -0.7885 1.2069 9 7 4.2457 -0.8107 2.3773 10 6 4.1190 0.2433 3.2873 11 6 3.4237 1.3959 2.9239 12 6 3.2865 2.4434 3.8174 13 6 3.8472 2.3628 5.0760 14 9 3.7151 3.3901 5.9433 15 6 4.5580 1.2051 5.4543 16 6 5.1350 1.1133 6.7408 17 1 5.3975 2.0113 7.2802 18 6 5.3662 -0.1411 7.3159 19 7 4.7966 -1.2064 6.8132 20 14 6.4881 -0.2950 8.8015 21 1 7.0042 1.0470 9.1732 22 1 5.7254 -0.8655 9.9409 23 1 7.6271 -1.1888 8.4713 24 6 4.6881 0.1424 4.5426 25 6 2.0428 -0.7350 1.2446 26 1 -0.3633 -1.0276 0.0045 27 1 -0.3633 0.5178 0.8878 28 1 -0.3633 0.5100 -0.8923 29 1 1.7338 -0.1832 -2.1394 30 1 1.6341 -1.7371 -1.2756 31 1 5.2950 -0.8671 0.0447 32 1 4.8308 -1.5577 2.5788 33 1 2.9857 1.4699 1.9395 34 1 2.7423 3.3298 3.5270 35 1 4.9565 -2.0760 7.2120 36 1 5.2308 -0.7486 4.8220 37 1 1.6436 -1.7491 1.2627 38 1 1.7205 -0.2016 2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210776570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -60.411351 kcal Electronic energy + Delta-G solvation = -22426.550718 eV Core-core repulsion = 18954.626298 eV Total energy + Delta-G solvation = -3471.924420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.25792 -40.19964 -38.43539 -36.75864 -35.20908 -33.71714 -31.28635 -29.94032 -28.87380 -27.43878 -26.79812 -25.45288 -22.16930 -21.66046 -21.10238 -20.17529 -18.14192 -17.58900 -16.64171 -16.15156 -16.03558 -15.45928 -15.26791 -14.94209 -14.57817 -14.24004 -14.04416 -13.94248 -13.38944 -12.97621 -12.73909 -12.60835 -12.32769 -12.31179 -12.01562 -11.90467 -11.74965 -11.60208 -11.21442 -11.16006 -10.85482 -10.81321 -10.64816 -10.31083 -9.77047 -9.65135 -9.41554 -9.32414 -8.56186 -7.73540 -7.01190 -6.59268 -4.59857 1.02636 2.54426 2.69058 2.98123 3.02468 3.05057 3.19794 3.78452 3.80153 4.39507 4.46127 4.68122 4.75632 4.80975 5.30928 5.35835 5.37248 5.48777 5.51180 5.59233 5.65799 5.79512 5.89057 5.97151 6.02911 6.06893 6.18679 6.32419 6.39757 6.49761 6.69182 6.76127 6.96117 7.02530 7.38189 7.42373 7.65278 7.83861 7.86763 8.03787 8.18383 8.42639 8.59371 8.68386 9.96494 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.004217 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.509188 B = 6638.406753 C = 7250.989879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.164 4.164 5 C 0.401 3.599 6 O -0.495 6.495 7 C -0.327 4.327 8 C 0.266 3.734 9 N -0.693 5.693 10 C 0.183 3.817 11 C -0.264 4.264 12 C -0.094 4.094 13 C -0.047 4.047 14 F -0.164 7.164 15 C 0.111 3.889 16 C -0.447 4.447 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.913 3.087 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.194 4.194 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.408 0.592 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.282 0.718 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -2.567 -7.280 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.202 4.202 5 C 0.285 3.715 6 O -0.376 6.376 7 C -0.351 4.351 8 C 0.163 3.837 9 N -0.319 5.319 10 C 0.088 3.912 11 C -0.286 4.286 12 C -0.113 4.113 13 C -0.068 4.068 14 F -0.143 7.143 15 C 0.107 3.893 16 C -0.476 4.476 17 H 0.103 0.897 18 C -0.143 4.143 19 N -0.413 5.413 20 Si 0.737 3.263 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.217 4.217 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.245 0.755 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.420 -2.708 -7.728 9.820 hybrid contribution 0.660 -0.409 1.039 1.297 sum -4.759 -3.117 -6.690 8.782 Atomic orbital electron populations 1.21812 0.94114 1.02119 1.02279 1.21187 0.96290 0.99980 0.92690 0.90040 1.22214 0.95316 1.02842 0.99826 1.20378 0.90811 0.71709 0.88631 1.90576 1.69870 1.40040 1.37122 1.21909 1.01382 1.18866 0.92903 1.20148 0.92374 0.84958 0.86224 1.41639 1.48851 1.23627 1.17753 1.17627 0.98115 0.86412 0.89057 1.19835 1.13650 0.94984 1.00116 1.20272 1.00362 0.98123 0.92589 1.17833 1.10232 0.89257 0.89499 1.91268 1.95240 1.57872 1.69951 1.17345 0.89312 0.89250 0.93402 1.19595 1.34354 0.93519 1.00165 0.89684 1.25928 0.94347 0.95149 0.98849 1.69802 1.33179 1.00149 1.38170 0.86159 0.80036 0.79767 0.80302 1.18157 1.19750 1.19550 1.20714 1.08432 1.02430 0.90096 1.21406 0.91361 1.02381 1.00315 0.92449 0.91913 0.92343 0.89213 0.88620 0.85506 0.75470 0.87991 0.87800 0.90668 0.85051 0.88933 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.21 37.16 0.34 -0.92 16 2 C -0.08 -0.88 2.75 -90.32 -0.25 -1.13 16 3 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 4 C -0.16 -1.81 5.37 -27.79 -0.15 -1.96 16 5 C 0.40 5.92 6.78 -33.72 -0.23 5.69 16 6 O -0.50 -8.98 17.82 5.33 0.09 -8.89 16 7 C -0.33 -4.88 9.52 -40.11 -0.38 -5.26 16 8 C 0.27 3.85 4.97 -81.79 -0.41 3.44 16 9 N -0.69 -11.45 5.26 -6.94 -0.04 -11.49 16 10 C 0.18 3.70 6.35 -83.79 -0.53 3.16 16 11 C -0.26 -5.23 8.15 -39.10 -0.32 -5.55 16 12 C -0.09 -1.99 10.00 -39.62 -0.40 -2.38 16 13 C -0.05 -1.15 7.31 -38.61 -0.28 -1.43 16 14 F -0.16 -4.00 16.71 2.25 0.04 -3.97 16 15 C 0.11 2.80 5.58 -106.78 -0.60 2.20 16 16 C -0.45 -11.40 8.79 -37.79 -0.33 -11.73 16 17 H 0.09 2.16 7.72 -52.49 -0.41 1.76 16 18 C 0.08 1.78 5.20 -17.34 -0.09 1.69 16 19 N -0.79 -18.69 10.82 55.55 0.60 -18.09 16 20 Si 0.91 17.72 29.58 -169.99 -5.03 12.69 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.19 -4.50 8.53 -38.70 -0.33 -4.83 16 25 C -0.12 -1.43 4.45 -27.77 -0.12 -1.55 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 32 H 0.41 6.20 8.83 -40.82 -0.36 5.84 16 33 H 0.10 1.79 5.70 -52.49 -0.30 1.49 16 34 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.28 6.05 8.30 -40.82 -0.34 5.71 16 36 H 0.13 3.11 6.09 -52.49 -0.32 2.79 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.39 6.44 -51.93 -0.33 1.06 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -27.40 320.18 -8.21 -35.62 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.63 Total: 9.83 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -4.07 Total: -20.54 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.56 Total: -29.57 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.40 -8.21 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210776570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.796 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds