Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.57276 * 2 1 4 4 C 1.53194 * 109.56969 * 239.74821 * 2 1 3 5 5 C 1.50682 * 109.08562 * 183.40307 * 4 2 1 6 6 O 1.21542 * 119.71000 * 208.92842 * 5 4 2 7 7 C 1.39825 * 120.59096 * 28.91465 * 5 4 2 8 8 C 1.35085 * 121.68937 * 0.06149 * 7 5 4 9 9 N 1.36336 * 119.41818 * 180.26784 * 8 7 5 10 10 C 1.39828 * 119.99843 * 120.45366 * 9 8 7 11 11 C 1.39420 * 119.91394 * 351.38655 * 10 9 8 12 12 C 1.38359 * 120.46258 * 179.72467 * 11 10 9 13 13 C 1.38019 * 120.29179 * 0.55155 * 12 11 10 14 14 F 1.35095 * 120.08950 * 179.74660 * 13 12 11 15 15 C 1.41024 * 119.82058 * 359.72797 * 13 12 11 16 16 C 1.41295 * 120.22562 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00186 * 334.94651 * 16 15 13 18 18 C 1.39919 * 120.00025 * 154.94252 * 16 15 13 19 19 N 1.30847 * 119.99913 * 345.08304 * 18 16 15 20 20 Si 1.86799 * 120.00147 * 165.08657 * 18 16 15 21 21 H 1.48507 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47239 * 119.99824 * 20 18 16 23 23 H 1.48499 * 109.47006 * 239.99869 * 20 18 16 24 24 C 1.38196 * 119.91771 * 171.66461 * 10 9 8 25 25 C 1.50545 * 121.16393 * 0.54935 * 8 7 5 26 26 H 1.08996 * 109.47193 * 180.25004 * 1 2 3 27 27 H 1.09005 * 109.46989 * 300.25142 * 1 2 3 28 28 H 1.09006 * 109.46999 * 60.24852 * 1 2 3 29 29 H 1.09005 * 109.53675 * 63.52657 * 4 2 1 30 30 H 1.09001 * 109.60699 * 303.33145 * 4 2 1 31 31 H 1.08005 * 119.15945 * 180.09639 * 7 5 4 32 32 H 0.97001 * 120.00332 * 300.44483 * 9 8 7 33 33 H 1.08000 * 119.77031 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.85399 * 180.26167 * 12 11 10 35 35 H 0.96997 * 120.00498 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.14533 * 0.02562 * 24 10 9 37 37 H 1.08998 * 109.46934 * 90.08923 * 25 8 7 38 38 H 1.09001 * 109.47367 * 210.09370 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0432 -0.7272 -1.2469 5 6 3.5476 -0.7942 -1.1940 6 8 4.1859 -0.8255 -2.2279 7 6 4.2160 -0.8205 0.0338 8 6 3.5469 -0.7885 1.2069 9 7 4.2457 -0.8107 2.3773 10 6 4.1190 0.2433 3.2873 11 6 3.4237 1.3959 2.9239 12 6 3.2865 2.4434 3.8174 13 6 3.8472 2.3628 5.0760 14 9 3.7151 3.3901 5.9433 15 6 4.5580 1.2051 5.4543 16 6 5.1350 1.1133 6.7408 17 1 5.3975 2.0113 7.2802 18 6 5.3662 -0.1411 7.3159 19 7 4.7966 -1.2064 6.8132 20 14 6.4881 -0.2950 8.8015 21 1 7.0042 1.0470 9.1732 22 1 5.7254 -0.8655 9.9409 23 1 7.6271 -1.1888 8.4713 24 6 4.6881 0.1424 4.5426 25 6 2.0428 -0.7350 1.2446 26 1 -0.3633 -1.0276 0.0045 27 1 -0.3633 0.5178 0.8878 28 1 -0.3633 0.5100 -0.8923 29 1 1.7338 -0.1832 -2.1394 30 1 1.6341 -1.7371 -1.2756 31 1 5.2950 -0.8671 0.0447 32 1 4.8308 -1.5577 2.5788 33 1 2.9857 1.4699 1.9395 34 1 2.7423 3.3298 3.5270 35 1 4.9565 -2.0760 7.2120 36 1 5.2308 -0.7486 4.8220 37 1 1.6436 -1.7491 1.2627 38 1 1.7205 -0.2016 2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210776570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = -73.819890 kcal Electronic energy + Delta-G solvation = -22427.132156 eV Core-core repulsion = 18954.626298 eV Total energy + Delta-G solvation = -3472.505858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.11401 -41.40666 -39.91649 -38.15334 -36.47911 -35.39587 -32.56284 -31.69218 -30.07725 -28.79955 -27.77966 -27.18857 -23.61130 -23.29074 -22.03482 -21.72111 -19.44750 -19.14264 -18.01491 -17.88817 -17.52272 -16.77952 -16.64132 -16.23478 -16.04023 -15.90251 -15.38544 -15.26765 -14.86445 -14.43931 -14.10491 -13.78721 -13.68623 -13.49215 -13.47466 -13.23996 -13.07341 -12.82484 -12.78636 -12.51991 -12.30218 -12.03136 -11.72783 -11.67172 -11.38069 -11.30153 -10.90210 -10.59141 -9.94982 -9.51231 -8.75260 -8.20654 -6.46617 -0.20170 0.85571 0.95342 1.38042 1.47245 1.52073 1.99960 2.18496 2.44266 2.64635 3.44014 3.50967 3.67639 3.82517 3.91835 4.09430 4.25689 4.40630 4.44418 4.58464 4.62062 4.67892 4.78128 4.79458 4.94989 4.99011 5.04856 5.14704 5.21145 5.24749 5.30578 5.34432 5.45207 5.49557 5.69098 5.72798 5.95382 6.04205 6.32523 6.61804 6.70384 6.76649 6.79349 6.90746 8.23878 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.004217 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.509188 B = 6638.406753 C = 7250.989879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.155 4.155 5 C 0.400 3.600 6 O -0.534 6.534 7 C -0.329 4.329 8 C 0.268 3.732 9 N -0.691 5.691 10 C 0.197 3.803 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.087 4.087 14 F -0.174 7.174 15 C 0.084 3.916 16 C -0.490 4.490 17 H 0.069 0.931 18 C 0.043 3.957 19 N -0.810 5.810 20 Si 0.981 3.019 21 H -0.265 1.265 22 H -0.263 1.263 23 H -0.259 1.259 24 C -0.213 4.213 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.413 0.587 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.292 0.708 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 -3.398 -8.532 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.192 4.192 5 C 0.287 3.713 6 O -0.418 6.418 7 C -0.352 4.352 8 C 0.167 3.833 9 N -0.317 5.317 10 C 0.100 3.900 11 C -0.275 4.275 12 C -0.106 4.106 13 C -0.107 4.107 14 F -0.153 7.153 15 C 0.080 3.920 16 C -0.519 4.519 17 H 0.087 0.913 18 C -0.174 4.174 19 N -0.436 5.436 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.236 4.236 25 C -0.153 4.153 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.251 0.749 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.910 -3.557 -9.012 11.900 hybrid contribution 1.083 -0.181 1.265 1.675 sum -5.827 -3.738 -7.747 10.390 Atomic orbital electron populations 1.21789 0.92064 1.03244 1.02843 1.21161 0.97836 0.99098 0.91388 0.90851 1.22198 0.91904 1.04571 1.00528 1.20872 0.92767 0.70098 0.87561 1.90572 1.71109 1.41993 1.38136 1.21927 1.00938 1.18824 0.93558 1.20435 0.93574 0.84328 0.84981 1.41593 1.49331 1.23078 1.17672 1.17620 0.96455 0.87369 0.88518 1.20159 1.12428 0.94054 1.00893 1.20593 0.99296 0.99353 0.91401 1.18167 1.12281 0.89425 0.90877 1.91225 1.95463 1.58118 1.70492 1.17689 0.89881 0.90410 0.93976 1.19713 1.37005 0.94033 1.01108 0.91280 1.26624 0.95143 0.94269 1.01343 1.69815 1.33677 1.00686 1.39386 0.85170 0.78307 0.79390 0.76998 1.18854 1.18779 1.18339 1.20630 1.09807 1.01872 0.91272 1.21492 0.89192 1.03919 1.00670 0.91088 0.92138 0.91082 0.87943 0.86128 0.86996 0.74859 0.85116 0.85056 0.89720 0.86101 0.86578 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.21 71.98 0.66 -1.18 16 2 C -0.08 -1.32 2.75 -10.60 -0.03 -1.35 16 3 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 4 C -0.15 -2.82 5.37 29.91 0.16 -2.66 16 5 C 0.40 11.01 6.78 26.06 0.18 11.19 16 6 O -0.53 -18.81 17.82 -3.85 -0.07 -18.88 16 7 C -0.33 -9.31 9.52 21.93 0.21 -9.11 16 8 C 0.27 7.19 4.97 41.08 0.20 7.39 16 9 N -0.69 -22.02 5.26 -175.88 -0.92 -22.94 16 10 C 0.20 7.84 6.35 38.14 0.24 8.09 16 11 C -0.25 -9.61 8.15 22.58 0.18 -9.43 16 12 C -0.09 -3.61 10.00 22.25 0.22 -3.38 16 13 C -0.09 -4.30 7.31 22.90 0.17 -4.13 16 14 F -0.17 -8.76 16.71 44.97 0.75 -8.01 16 15 C 0.08 4.40 5.58 -21.26 -0.12 4.29 16 16 C -0.49 -26.09 8.79 23.43 0.21 -25.88 16 17 H 0.07 3.74 7.72 -2.91 -0.02 3.72 16 18 C 0.04 2.05 5.20 85.25 0.44 2.49 16 19 N -0.81 -39.07 10.82 21.82 0.24 -38.84 16 20 Si 0.98 36.85 29.58 68.60 2.03 38.88 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 24 C -0.21 -10.08 8.53 22.84 0.19 -9.88 16 25 C -0.11 -2.44 4.45 29.92 0.13 -2.30 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.11 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.41 12.30 8.83 -92.71 -0.82 11.48 16 33 H 0.13 4.19 5.70 -2.91 -0.02 4.17 16 34 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.29 12.55 8.30 -92.71 -0.77 11.78 16 36 H 0.12 5.90 6.09 -2.91 -0.02 5.88 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 Total: -1.00 -61.31 320.18 5.36 -55.95 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.28 Total: 29.71 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 3.06 Total: -35.87 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.69 Total: -61.78 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.07 Total: -18.88 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.75 Total: -8.01 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -61.31 5.36 -55.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210776570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.874 kcal (2) G-P(sol) polarization free energy of solvation -61.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds