Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.56981 * 2 1 4 4 C 1.53194 * 109.57448 * 120.25221 * 2 1 3 5 5 C 1.50687 * 109.08589 * 176.72728 * 4 2 1 6 6 O 1.21541 * 119.70825 * 151.09482 * 5 4 2 7 7 C 1.39825 * 120.59106 * 331.06240 * 5 4 2 8 8 C 1.35084 * 121.68544 * 359.91900 * 7 5 4 9 9 N 1.36348 * 119.41652 * 179.75471 * 8 7 5 10 10 C 1.39828 * 119.99549 * 352.94710 * 9 8 7 11 11 C 1.39418 * 119.91218 * 135.69911 * 10 9 8 12 12 C 1.38349 * 120.46314 * 179.97438 * 11 10 9 13 13 C 1.38015 * 120.29476 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.08890 * 180.02562 * 13 12 11 15 15 C 1.41021 * 119.82182 * 359.97438 * 13 12 11 16 16 C 1.41300 * 120.22491 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00011 * 334.69635 * 16 15 13 18 18 C 1.39920 * 119.99466 * 154.70132 * 16 15 13 19 19 N 1.30855 * 120.00083 * 343.31267 * 18 16 15 20 20 Si 1.86801 * 119.99737 * 163.31748 * 18 16 15 21 21 H 1.48502 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47281 * 119.99948 * 20 18 16 23 23 H 1.48501 * 109.47034 * 239.99661 * 20 18 16 24 24 C 1.38195 * 119.91779 * 315.70191 * 10 9 8 25 25 C 1.50541 * 121.17257 * 0.02562 * 8 7 5 26 26 H 1.09006 * 109.47252 * 299.74856 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.74628 * 1 2 3 28 28 H 1.09007 * 109.47140 * 179.74971 * 1 2 3 29 29 H 1.08999 * 109.53872 * 56.83919 * 4 2 1 30 30 H 1.09005 * 109.59872 * 296.64611 * 4 2 1 31 31 H 1.07999 * 119.15689 * 179.97438 * 7 5 4 32 32 H 0.96996 * 119.99919 * 172.95172 * 9 8 7 33 33 H 1.07997 * 119.76702 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.85386 * 180.27687 * 12 11 10 35 35 H 0.97003 * 119.99526 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.14757 * 0.02562 * 24 10 9 37 37 H 1.09000 * 109.47548 * 149.37112 * 25 8 7 38 38 H 1.09000 * 109.47609 * 269.38466 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0432 -0.7272 1.2468 5 6 3.5478 -0.7913 1.1955 6 8 4.1851 -0.8226 2.2299 7 6 4.2175 -0.8159 -0.0318 8 6 3.5494 -0.7851 -1.2054 9 7 4.2494 -0.8060 -2.3753 10 6 5.6443 -0.7100 -2.3570 11 6 6.4098 -1.5524 -3.1620 12 6 7.7906 -1.4669 -3.1533 13 6 8.4260 -0.5454 -2.3459 14 9 9.7746 -0.4651 -2.3411 15 6 7.6636 0.3128 -1.5267 16 6 8.3053 1.2598 -0.6972 17 1 9.3180 1.0874 -0.3639 18 6 7.6285 2.4207 -0.3074 19 7 6.5527 2.7978 -0.9499 20 14 8.2609 3.4324 1.1299 21 1 9.4837 2.7966 1.6828 22 1 8.5833 4.8054 0.6650 23 1 7.2180 3.4993 2.1850 24 6 6.2606 0.2197 -1.5411 25 6 2.0458 -0.7220 -1.2447 26 1 -0.3634 0.5099 0.8923 27 1 -0.3634 0.5178 -0.8877 28 1 -0.3634 -1.0277 -0.0045 29 1 1.6359 -1.7379 1.2729 30 1 1.7318 -0.1857 2.1401 31 1 5.2965 -0.8616 -0.0416 32 1 3.7798 -0.8874 -3.2200 33 1 5.9213 -2.2763 -3.7974 34 1 8.3738 -2.1213 -3.7842 35 1 6.0837 3.6028 -0.6799 36 1 5.6673 0.8718 -0.9173 37 1 1.7279 -0.1825 -2.1369 38 1 1.6401 -1.7334 -1.2677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210776571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -60.227755 kcal Electronic energy + Delta-G solvation = -22873.141110 eV Core-core repulsion = 19401.224651 eV Total energy + Delta-G solvation = -3471.916459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.27800 -39.99341 -38.22559 -36.66854 -35.16927 -33.71138 -30.85440 -29.82262 -29.12929 -27.44118 -26.58739 -25.42822 -22.16288 -21.49536 -20.93167 -20.26314 -18.00032 -17.46313 -16.45726 -16.16946 -16.00972 -15.20246 -15.08806 -14.68658 -14.44593 -14.05132 -13.88446 -13.80453 -13.47998 -13.06264 -12.75362 -12.49955 -12.43379 -12.09120 -11.97709 -11.84770 -11.63938 -11.30854 -11.11438 -10.94228 -10.83251 -10.78187 -10.56480 -10.31295 -10.16576 -9.64351 -9.32379 -8.90048 -7.90052 -7.67924 -6.93380 -6.70446 -4.52501 1.61160 2.55258 2.65486 3.05555 3.12054 3.13579 3.68015 3.73940 3.88093 4.40006 4.62917 4.72552 4.83787 4.94540 5.31794 5.38625 5.46663 5.47721 5.57194 5.58203 5.71541 5.79973 5.95403 5.96453 6.01158 6.17570 6.26418 6.28259 6.68026 6.78440 6.92228 6.99402 7.05227 7.14335 7.36329 7.54569 7.68731 7.86467 7.95082 8.14152 8.42862 8.48091 8.63150 8.69089 10.01078 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.006417 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.285748 B = 4362.563396 C = 5645.558682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.164 4.164 5 C 0.400 3.600 6 O -0.506 6.506 7 C -0.386 4.386 8 C 0.248 3.752 9 N -0.646 5.646 10 C 0.133 3.867 11 C -0.239 4.239 12 C -0.106 4.106 13 C -0.034 4.034 14 F -0.162 7.162 15 C 0.095 3.905 16 C -0.443 4.443 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.782 5.782 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.267 1.267 24 C -0.151 4.151 25 C -0.092 4.092 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.401 0.599 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.284 0.716 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -3.258 -2.279 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.202 4.202 5 C 0.286 3.714 6 O -0.388 6.388 7 C -0.414 4.414 8 C 0.136 3.864 9 N -0.261 5.261 10 C 0.041 3.959 11 C -0.260 4.260 12 C -0.126 4.126 13 C -0.054 4.054 14 F -0.141 7.141 15 C 0.091 3.909 16 C -0.471 4.471 17 H 0.105 0.895 18 C -0.142 4.142 19 N -0.406 5.406 20 Si 0.735 3.265 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.192 1.192 24 C -0.172 4.172 25 C -0.130 4.130 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.235 0.765 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.102 0.898 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.944 -3.052 -1.760 12.453 hybrid contribution 0.239 0.470 -0.024 0.528 sum -11.705 -2.582 -1.784 12.118 Atomic orbital electron populations 1.21816 0.94298 1.02006 1.02098 1.21051 0.95753 1.00289 0.92946 0.90019 1.22204 0.96815 1.02165 0.99004 1.20075 0.89772 0.72567 0.89003 1.90560 1.69709 1.41612 1.36940 1.21534 1.02968 1.25218 0.91657 1.20247 0.91992 0.87033 0.87130 1.41758 1.05407 1.72730 1.06222 1.17531 0.80457 0.97071 1.00847 1.19911 0.92579 1.04575 1.08950 1.20280 0.94214 0.98511 0.99597 1.17881 0.76313 1.05928 1.05303 1.91278 1.30359 1.96313 1.96152 1.17455 0.91494 0.91356 0.90598 1.19592 1.01060 1.01809 1.24652 0.89528 1.25930 0.94055 0.97775 0.96474 1.69785 1.15207 1.21355 1.34267 0.86178 0.80410 0.79001 0.80880 1.18035 1.19771 1.19218 1.21220 0.94287 0.98662 1.03007 1.20840 0.89978 1.02417 0.99780 0.92194 0.92372 0.92450 0.89180 0.89623 0.83725 0.76464 0.88211 0.87655 0.90539 0.84006 0.89776 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.22 37.15 0.34 -0.83 16 2 C -0.08 -0.90 2.76 -90.59 -0.25 -1.16 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.16 -2.19 5.38 -27.79 -0.15 -2.34 16 5 C 0.40 7.65 6.78 -33.72 -0.23 7.42 16 6 O -0.51 -11.82 17.82 5.33 0.09 -11.73 16 7 C -0.39 -7.63 7.70 -40.11 -0.31 -7.94 16 8 C 0.25 3.95 6.44 -81.78 -0.53 3.43 16 9 N -0.65 -10.63 5.36 -6.94 -0.04 -10.67 16 10 C 0.13 2.81 5.69 -83.79 -0.48 2.33 16 11 C -0.24 -4.86 9.97 -39.10 -0.39 -5.25 16 12 C -0.11 -2.32 10.00 -39.62 -0.40 -2.72 16 13 C -0.03 -0.85 7.31 -38.61 -0.28 -1.13 16 14 F -0.16 -4.06 16.72 2.25 0.04 -4.02 16 15 C 0.10 2.52 5.57 -106.78 -0.60 1.92 16 16 C -0.44 -11.90 8.78 -37.79 -0.33 -12.23 16 17 H 0.09 2.31 7.74 -52.49 -0.41 1.90 16 18 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 19 N -0.78 -19.70 10.94 55.55 0.61 -19.09 16 20 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.15 -3.70 5.97 -38.70 -0.23 -3.93 16 25 C -0.09 -1.01 5.24 -28.03 -0.15 -1.15 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.15 3.47 5.14 -52.49 -0.27 3.20 16 32 H 0.40 5.16 8.83 -40.82 -0.36 4.80 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 36 H 0.14 3.67 4.94 -52.49 -0.26 3.41 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -30.38 319.90 -8.22 -38.60 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.66 Total: 9.60 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -4.06 Total: -21.72 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.57 Total: -29.76 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.38 -8.22 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210776571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.624 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds