Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.56981 * 2 1 4 4 C 1.53194 * 109.57448 * 120.25221 * 2 1 3 5 5 C 1.50687 * 109.08589 * 176.72728 * 4 2 1 6 6 O 1.21541 * 119.70825 * 151.09482 * 5 4 2 7 7 C 1.39825 * 120.59106 * 331.06240 * 5 4 2 8 8 C 1.35084 * 121.68544 * 359.91900 * 7 5 4 9 9 N 1.36348 * 119.41652 * 179.75471 * 8 7 5 10 10 C 1.39828 * 119.99549 * 352.94710 * 9 8 7 11 11 C 1.39418 * 119.91218 * 135.69911 * 10 9 8 12 12 C 1.38349 * 120.46314 * 179.97438 * 11 10 9 13 13 C 1.38015 * 120.29476 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.08890 * 180.02562 * 13 12 11 15 15 C 1.41021 * 119.82182 * 359.97438 * 13 12 11 16 16 C 1.41300 * 120.22491 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00011 * 334.69635 * 16 15 13 18 18 C 1.39920 * 119.99466 * 154.70132 * 16 15 13 19 19 N 1.30855 * 120.00083 * 343.31267 * 18 16 15 20 20 Si 1.86801 * 119.99737 * 163.31748 * 18 16 15 21 21 H 1.48502 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47281 * 119.99948 * 20 18 16 23 23 H 1.48501 * 109.47034 * 239.99661 * 20 18 16 24 24 C 1.38195 * 119.91779 * 315.70191 * 10 9 8 25 25 C 1.50541 * 121.17257 * 0.02562 * 8 7 5 26 26 H 1.09006 * 109.47252 * 299.74856 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.74628 * 1 2 3 28 28 H 1.09007 * 109.47140 * 179.74971 * 1 2 3 29 29 H 1.08999 * 109.53872 * 56.83919 * 4 2 1 30 30 H 1.09005 * 109.59872 * 296.64611 * 4 2 1 31 31 H 1.07999 * 119.15689 * 179.97438 * 7 5 4 32 32 H 0.96996 * 119.99919 * 172.95172 * 9 8 7 33 33 H 1.07997 * 119.76702 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.85386 * 180.27687 * 12 11 10 35 35 H 0.97003 * 119.99526 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.14757 * 0.02562 * 24 10 9 37 37 H 1.09000 * 109.47548 * 149.37112 * 25 8 7 38 38 H 1.09000 * 109.47609 * 269.38466 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0432 -0.7272 1.2468 5 6 3.5478 -0.7913 1.1955 6 8 4.1851 -0.8226 2.2299 7 6 4.2175 -0.8159 -0.0318 8 6 3.5494 -0.7851 -1.2054 9 7 4.2494 -0.8060 -2.3753 10 6 5.6443 -0.7100 -2.3570 11 6 6.4098 -1.5524 -3.1620 12 6 7.7906 -1.4669 -3.1533 13 6 8.4260 -0.5454 -2.3459 14 9 9.7746 -0.4651 -2.3411 15 6 7.6636 0.3128 -1.5267 16 6 8.3053 1.2598 -0.6972 17 1 9.3180 1.0874 -0.3639 18 6 7.6285 2.4207 -0.3074 19 7 6.5527 2.7978 -0.9499 20 14 8.2609 3.4324 1.1299 21 1 9.4837 2.7966 1.6828 22 1 8.5833 4.8054 0.6650 23 1 7.2180 3.4993 2.1850 24 6 6.2606 0.2197 -1.5411 25 6 2.0458 -0.7220 -1.2447 26 1 -0.3634 0.5099 0.8923 27 1 -0.3634 0.5178 -0.8877 28 1 -0.3634 -1.0277 -0.0045 29 1 1.6359 -1.7379 1.2729 30 1 1.7318 -0.1857 2.1401 31 1 5.2965 -0.8616 -0.0416 32 1 3.7798 -0.8874 -3.2200 33 1 5.9213 -2.2763 -3.7974 34 1 8.3738 -2.1213 -3.7842 35 1 6.0837 3.6028 -0.6799 36 1 5.6673 0.8718 -0.9173 37 1 1.7279 -0.1825 -2.1369 38 1 1.6401 -1.7334 -1.2677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210776571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = -78.159740 kcal Electronic energy + Delta-G solvation = -22873.918699 eV Core-core repulsion = 19401.224651 eV Total energy + Delta-G solvation = -3472.694048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23490 -41.38775 -39.84338 -38.15819 -36.57033 -35.48488 -32.31388 -31.55339 -30.57291 -28.85804 -27.58778 -27.27413 -23.79950 -23.06055 -22.32613 -21.62359 -19.67300 -18.89262 -18.03458 -17.88223 -17.72465 -16.93374 -16.42096 -16.22815 -15.99395 -15.82975 -15.29933 -15.14033 -14.78392 -14.70978 -14.40263 -13.91289 -13.80900 -13.58583 -13.32998 -13.19778 -12.88505 -12.82390 -12.77121 -12.39636 -12.24809 -12.05315 -11.93583 -11.72730 -11.58868 -11.40327 -11.14756 -10.36360 -9.57916 -9.54601 -8.80639 -8.35553 -6.50943 0.14042 0.78116 0.85019 1.28040 1.39333 1.42471 2.10603 2.25836 2.34159 2.55875 3.40265 3.56508 3.70359 3.85381 3.95057 3.99095 4.25511 4.43451 4.54693 4.57321 4.62755 4.71349 4.74491 4.80011 4.91297 4.98264 5.00471 5.13695 5.17663 5.31929 5.35575 5.39668 5.51805 5.59814 5.67677 5.73327 5.93887 5.96070 6.19441 6.45950 6.69507 6.78156 6.82384 7.05301 8.15573 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.006417 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.285748 B = 4362.563396 C = 5645.558682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.152 4.152 5 C 0.390 3.610 6 O -0.574 6.574 7 C -0.435 4.435 8 C 0.283 3.717 9 N -0.631 5.631 10 C 0.137 3.863 11 C -0.218 4.218 12 C -0.105 4.105 13 C -0.068 4.068 14 F -0.171 7.171 15 C 0.061 3.939 16 C -0.491 4.491 17 H 0.069 0.931 18 C 0.042 3.958 19 N -0.806 5.806 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.251 1.251 23 H -0.268 1.268 24 C -0.163 4.163 25 C -0.087 4.087 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.426 0.574 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.291 0.709 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.082 -4.329 -4.505 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.079 0.921 4 C -0.189 4.189 5 C 0.281 3.719 6 O -0.461 6.461 7 C -0.463 4.463 8 C 0.169 3.831 9 N -0.248 5.248 10 C 0.043 3.957 11 C -0.239 4.239 12 C -0.124 4.124 13 C -0.088 4.088 14 F -0.150 7.150 15 C 0.057 3.943 16 C -0.519 4.519 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.431 5.431 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.175 1.175 23 H -0.193 1.193 24 C -0.184 4.184 25 C -0.125 4.125 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.792 -4.129 -4.056 16.819 hybrid contribution 1.386 0.649 0.489 1.607 sum -14.405 -3.480 -3.567 15.243 Atomic orbital electron populations 1.21764 0.90955 1.03620 1.03051 1.21060 0.98217 0.98737 0.91636 0.92079 1.22151 0.91767 1.04330 1.00687 1.20838 0.92784 0.70595 0.87703 1.90520 1.71655 1.45369 1.38604 1.21297 1.00760 1.30040 0.94236 1.20858 0.94738 0.82217 0.85305 1.41718 1.03718 1.71542 1.07776 1.17609 0.82918 0.95749 0.99433 1.20437 0.92051 1.03738 1.07627 1.20693 0.95289 0.97707 0.98738 1.18276 0.76226 1.07516 1.06778 1.91238 1.30915 1.96508 1.96323 1.17827 0.92823 0.92201 0.91445 1.19686 1.01068 1.03782 1.27409 0.91280 1.26595 0.94329 0.98209 0.98379 1.69791 1.15972 1.22052 1.35281 0.85294 0.79398 0.78339 0.77718 1.18617 1.17529 1.19292 1.21094 0.93637 0.99853 1.03862 1.21109 0.85085 1.05202 1.01068 0.92088 0.90731 0.90481 0.86211 0.89423 0.89158 0.73471 0.83477 0.84362 0.89792 0.86079 0.86248 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.22 71.98 0.66 -0.82 16 2 C -0.08 -1.44 2.76 -10.78 -0.03 -1.47 16 3 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 4 C -0.15 -3.78 5.38 29.91 0.16 -3.62 16 5 C 0.39 15.48 6.78 26.07 0.18 15.65 16 6 O -0.57 -28.92 17.82 -3.84 -0.07 -28.99 16 7 C -0.44 -17.79 7.70 21.93 0.17 -17.62 16 8 C 0.28 8.37 6.44 41.08 0.26 8.64 16 9 N -0.63 -18.84 5.36 -175.88 -0.94 -19.78 16 10 C 0.14 5.62 5.69 38.14 0.22 5.84 16 11 C -0.22 -8.24 9.97 22.58 0.23 -8.01 16 12 C -0.10 -4.45 10.00 22.24 0.22 -4.23 16 13 C -0.07 -3.51 7.31 22.90 0.17 -3.34 16 14 F -0.17 -8.96 16.72 44.97 0.75 -8.21 16 15 C 0.06 3.41 5.57 -21.26 -0.12 3.30 16 16 C -0.49 -28.48 8.78 23.43 0.21 -28.27 16 17 H 0.07 4.05 7.74 -2.91 -0.02 4.03 16 18 C 0.04 2.22 5.16 85.25 0.44 2.66 16 19 N -0.81 -42.65 10.94 21.82 0.24 -42.41 16 20 Si 0.97 41.70 29.59 68.60 2.03 43.73 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.16 -8.37 5.97 22.84 0.14 -8.23 16 25 C -0.09 -1.45 5.24 29.75 0.16 -1.29 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.09 4.70 5.14 -2.91 -0.01 4.68 16 32 H 0.43 8.71 8.83 -92.71 -0.82 7.89 16 33 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 36 H 0.12 6.68 4.94 -2.91 -0.01 6.66 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.53 319.90 5.34 -71.19 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.28 Total: 25.29 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.06 Total: -40.82 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.70 Total: -62.19 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.07 Total: -28.99 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.75 Total: -8.21 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -76.53 5.34 -71.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210776571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.973 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds