Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 N 1.46506 * 109.47280 * 180.02562 * 3 2 1 5 5 N 1.40075 * 126.09419 * 270.13497 * 4 3 2 6 6 C 1.30822 * 108.42194 * 180.30704 * 5 4 3 7 7 C 1.39731 * 108.45138 * 359.74005 * 6 5 4 8 8 C 1.35821 * 126.09260 * 89.99629 * 4 3 2 9 9 N 1.39233 * 126.27042 * 359.97008 * 8 4 3 10 10 C 1.39800 * 119.99928 * 185.92903 * 9 8 4 11 11 C 1.39440 * 119.91930 * 35.00064 * 10 9 8 12 12 C 1.38347 * 120.46221 * 180.27912 * 11 10 9 13 13 C 1.38017 * 120.29225 * 359.49061 * 12 11 10 14 14 F 1.35105 * 120.08782 * 180.23097 * 13 12 11 15 15 C 1.41023 * 119.82431 * 0.25001 * 13 12 11 16 16 C 1.41294 * 120.22537 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00072 * 334.60958 * 16 15 13 18 18 C 1.39908 * 119.99623 * 154.60489 * 16 15 13 19 19 N 1.30855 * 120.00207 * 343.30567 * 18 16 15 20 20 Si 1.86803 * 119.99746 * 163.30268 * 18 16 15 21 21 H 1.48495 * 109.46979 * 94.96857 * 20 18 16 22 22 H 1.48502 * 109.47047 * 214.96963 * 20 18 16 23 23 H 1.48497 * 109.47326 * 334.96418 * 20 18 16 24 24 C 1.38186 * 119.91570 * 214.77015 * 10 9 8 25 25 H 1.09000 * 109.47121 * 60.00298 * 1 2 3 26 26 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47227 * 299.99920 * 1 2 3 28 28 H 1.09006 * 109.47078 * 240.00060 * 2 1 3 29 29 H 1.08994 * 109.47335 * 120.00388 * 2 1 3 30 30 H 1.08992 * 109.47021 * 59.99954 * 3 2 1 31 31 H 1.09003 * 109.47364 * 300.00053 * 3 2 1 32 32 H 1.08000 * 125.77443 * 179.75033 * 6 5 4 33 33 H 1.08006 * 126.07421 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00169 * 5.92547 * 9 8 4 35 35 H 1.08002 * 119.76718 * 0.04704 * 11 10 9 36 36 H 1.08006 * 119.85258 * 179.76390 * 12 11 10 37 37 H 0.97004 * 119.99731 * 179.97438 * 19 18 16 38 38 H 1.08007 * 120.14690 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3307 1.4397 1.1309 6 6 5.5770 1.4474 0.7333 7 6 5.5954 1.4494 -0.6639 8 6 4.3047 1.4426 -1.0985 9 7 3.8822 1.4422 -2.4252 10 6 4.8177 1.3173 -3.4565 11 6 5.9445 0.5150 -3.2802 12 6 6.8802 0.3880 -4.2912 13 6 6.7028 1.0468 -5.4909 14 9 7.6169 0.9161 -6.4771 15 6 5.5650 1.8572 -5.6844 16 6 5.3746 2.5351 -6.9094 17 1 6.2251 2.7845 -7.5264 18 6 4.0841 2.8831 -7.3230 19 7 3.0438 2.3147 -6.7688 20 14 3.8462 4.1591 -8.6663 21 1 3.7002 3.4766 -9.9771 22 1 2.6242 4.9540 -8.3832 23 1 5.0251 5.0612 -8.7066 24 6 4.6210 1.9855 -4.6500 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 6.4448 1.4514 1.3761 33 1 6.4767 1.4557 -1.2883 34 1 2.9389 1.5284 -2.6339 35 1 6.0895 -0.0080 -2.3464 36 1 7.7513 -0.2331 -4.1426 37 1 2.1491 2.5563 -7.0554 38 1 3.7465 2.6042 -4.7875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210923285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = 46.356328 kcal Electronic energy + Delta-G solvation = -22315.232074 eV Core-core repulsion = 18880.230199 eV Total energy + Delta-G solvation = -3435.001875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.23945 -40.88006 -37.93148 -35.38285 -34.96305 -33.48572 -31.21749 -29.92845 -29.04635 -27.08777 -26.12056 -25.41559 -22.15598 -21.77897 -21.23003 -20.29012 -19.60341 -17.68709 -17.33078 -16.15769 -15.81271 -15.36189 -15.06583 -14.97691 -14.60382 -14.30654 -14.02226 -13.62814 -13.20853 -13.03500 -12.85186 -12.66656 -12.24230 -12.17309 -11.97177 -11.73472 -11.63356 -11.45641 -11.34616 -11.14496 -10.95503 -10.75188 -10.40630 -10.15994 -10.05710 -9.61613 -9.34397 -8.65033 -7.83822 -7.68844 -7.01536 -6.54075 -4.54895 2.19536 2.57578 2.62718 2.76054 2.98932 3.02333 3.08884 3.39396 3.81404 3.82648 4.41970 4.57733 4.74643 5.00030 5.08763 5.29779 5.33789 5.41270 5.53028 5.74663 5.81181 5.87243 5.95974 5.97983 6.07178 6.13704 6.41051 6.45677 6.59061 6.78165 6.95081 7.05184 7.09438 7.13798 7.44773 7.57946 7.66334 7.83917 7.97127 8.15018 8.28720 8.45693 8.61414 8.71333 9.98667 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.004731 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.081793 B = 5916.372343 C = 7107.666653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.137 3.863 4 N -0.404 5.404 5 N -0.322 5.322 6 C 0.070 3.930 7 C -0.337 4.337 8 C 0.365 3.635 9 N -0.660 5.660 10 C 0.174 3.826 11 C -0.242 4.242 12 C -0.102 4.102 13 C -0.039 4.039 14 F -0.163 7.163 15 C 0.105 3.895 16 C -0.450 4.450 17 H 0.085 0.915 18 C 0.077 3.923 19 N -0.790 5.790 20 Si 0.912 3.088 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.174 4.174 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.401 0.599 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.282 0.718 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 -1.032 9.085 10.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.194 5.194 5 N -0.143 5.143 6 C -0.116 4.116 7 C -0.371 4.371 8 C 0.141 3.859 9 N -0.288 5.288 10 C 0.080 3.920 11 C -0.264 4.264 12 C -0.122 4.122 13 C -0.060 4.060 14 F -0.143 7.143 15 C 0.101 3.899 16 C -0.479 4.479 17 H 0.103 0.897 18 C -0.141 4.141 19 N -0.415 5.415 20 Si 0.736 3.264 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.194 0.806 33 H 0.173 0.827 34 H 0.237 0.763 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.486 -1.056 10.018 11.471 hybrid contribution -0.004 0.474 -1.608 1.676 sum -5.491 -0.581 8.410 10.061 Atomic orbital electron populations 1.21696 0.94559 1.02328 1.02085 1.21950 0.96390 0.96291 1.03430 1.21571 0.75218 0.97938 1.03722 1.48575 1.05386 1.62931 1.02459 1.77288 1.01549 1.29410 1.06059 1.23486 0.94997 0.98334 0.94815 1.21009 0.95436 1.25896 0.94737 1.18185 0.90509 0.96182 0.80987 1.41349 1.08960 1.78723 0.99738 1.17391 0.90316 0.97202 0.87115 1.20196 0.98067 1.07732 1.00416 1.20333 0.99077 1.00238 0.92513 1.17875 0.93482 1.07507 0.87146 1.91273 1.65825 1.95376 1.61782 1.17333 0.89400 0.89832 0.93325 1.19525 0.93482 1.31382 1.03475 0.89696 1.25911 0.95414 0.95308 0.97502 1.69811 0.99795 1.34136 1.37758 0.86218 0.79029 0.80684 0.80458 1.19345 1.19932 1.18183 1.20834 1.03537 1.03907 0.91383 0.92294 0.92113 0.92430 0.91340 0.91018 0.88992 0.89923 0.80605 0.82701 0.76335 0.86889 0.87671 0.90678 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.55 6.26 -26.73 -0.17 -1.72 16 3 C 0.14 1.65 6.29 -4.04 -0.03 1.63 16 4 N -0.40 -6.37 3.64 -60.29 -0.22 -6.59 16 5 N -0.32 -5.31 12.56 30.59 0.38 -4.93 16 6 C 0.07 1.08 12.00 -17.42 -0.21 0.87 16 7 C -0.34 -5.87 8.72 -39.76 -0.35 -6.22 16 8 C 0.37 6.41 7.48 -152.86 -1.14 5.27 16 9 N -0.66 -11.98 5.49 -9.92 -0.05 -12.04 16 10 C 0.17 3.71 6.24 -83.80 -0.52 3.19 16 11 C -0.24 -5.07 7.82 -39.09 -0.31 -5.38 16 12 C -0.10 -2.22 10.00 -39.62 -0.40 -2.62 16 13 C -0.04 -0.97 7.31 -38.61 -0.28 -1.25 16 14 F -0.16 -4.03 16.72 2.25 0.04 -3.99 16 15 C 0.11 2.70 5.57 -106.78 -0.59 2.10 16 16 C -0.45 -11.60 8.77 -37.80 -0.33 -11.93 16 17 H 0.08 2.18 7.74 -52.49 -0.41 1.77 16 18 C 0.08 1.84 5.16 -17.34 -0.09 1.75 16 19 N -0.79 -18.95 10.95 55.55 0.61 -18.34 16 20 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 24 C -0.17 -4.15 8.59 -38.70 -0.33 -4.48 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.90 7.46 -51.93 -0.39 0.51 16 32 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.16 2.77 5.98 -52.48 -0.31 2.45 16 34 H 0.40 6.56 8.08 -40.82 -0.33 6.23 16 35 H 0.11 2.20 5.99 -52.49 -0.31 1.89 16 36 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 38 H 0.13 3.11 6.18 -52.48 -0.32 2.79 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -27.57 325.08 -8.35 -35.92 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.59 Total: 11.89 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -4.38 Total: -19.69 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.72 Total: -41.90 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.57 -8.35 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210923285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.277 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds