Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 N 1.46506 * 109.47280 * 180.02562 * 3 2 1 5 5 N 1.40075 * 126.09419 * 270.13497 * 4 3 2 6 6 C 1.30822 * 108.42194 * 180.30704 * 5 4 3 7 7 C 1.39731 * 108.45138 * 359.74005 * 6 5 4 8 8 C 1.35821 * 126.09260 * 89.99629 * 4 3 2 9 9 N 1.39233 * 126.27042 * 359.97008 * 8 4 3 10 10 C 1.39800 * 119.99928 * 185.92903 * 9 8 4 11 11 C 1.39440 * 119.91930 * 35.00064 * 10 9 8 12 12 C 1.38347 * 120.46221 * 180.27912 * 11 10 9 13 13 C 1.38017 * 120.29225 * 359.49061 * 12 11 10 14 14 F 1.35105 * 120.08782 * 180.23097 * 13 12 11 15 15 C 1.41023 * 119.82431 * 0.25001 * 13 12 11 16 16 C 1.41294 * 120.22537 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00072 * 334.60958 * 16 15 13 18 18 C 1.39908 * 119.99623 * 154.60489 * 16 15 13 19 19 N 1.30855 * 120.00207 * 343.30567 * 18 16 15 20 20 Si 1.86803 * 119.99746 * 163.30268 * 18 16 15 21 21 H 1.48495 * 109.46979 * 94.96857 * 20 18 16 22 22 H 1.48502 * 109.47047 * 214.96963 * 20 18 16 23 23 H 1.48497 * 109.47326 * 334.96418 * 20 18 16 24 24 C 1.38186 * 119.91570 * 214.77015 * 10 9 8 25 25 H 1.09000 * 109.47121 * 60.00298 * 1 2 3 26 26 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47227 * 299.99920 * 1 2 3 28 28 H 1.09006 * 109.47078 * 240.00060 * 2 1 3 29 29 H 1.08994 * 109.47335 * 120.00388 * 2 1 3 30 30 H 1.08992 * 109.47021 * 59.99954 * 3 2 1 31 31 H 1.09003 * 109.47364 * 300.00053 * 3 2 1 32 32 H 1.08000 * 125.77443 * 179.75033 * 6 5 4 33 33 H 1.08006 * 126.07421 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00169 * 5.92547 * 9 8 4 35 35 H 1.08002 * 119.76718 * 0.04704 * 11 10 9 36 36 H 1.08006 * 119.85258 * 179.76390 * 12 11 10 37 37 H 0.97004 * 119.99731 * 179.97438 * 19 18 16 38 38 H 1.08007 * 120.14690 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3307 1.4397 1.1309 6 6 5.5770 1.4474 0.7333 7 6 5.5954 1.4494 -0.6639 8 6 4.3047 1.4426 -1.0985 9 7 3.8822 1.4422 -2.4252 10 6 4.8177 1.3173 -3.4565 11 6 5.9445 0.5150 -3.2802 12 6 6.8802 0.3880 -4.2912 13 6 6.7028 1.0468 -5.4909 14 9 7.6169 0.9161 -6.4771 15 6 5.5650 1.8572 -5.6844 16 6 5.3746 2.5351 -6.9094 17 1 6.2251 2.7845 -7.5264 18 6 4.0841 2.8831 -7.3230 19 7 3.0438 2.3147 -6.7688 20 14 3.8462 4.1591 -8.6663 21 1 3.7002 3.4766 -9.9771 22 1 2.6242 4.9540 -8.3832 23 1 5.0251 5.0612 -8.7066 24 6 4.6210 1.9855 -4.6500 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 6.4448 1.4514 1.3761 33 1 6.4767 1.4557 -1.2883 34 1 2.9389 1.5284 -2.6339 35 1 6.0895 -0.0080 -2.3464 36 1 7.7513 -0.2331 -4.1426 37 1 2.1491 2.5563 -7.0554 38 1 3.7465 2.6042 -4.7875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210923285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = 33.446653 kcal Electronic energy + Delta-G solvation = -22315.791879 eV Core-core repulsion = 18880.230199 eV Total energy + Delta-G solvation = -3435.561680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.13270 -42.17370 -39.62441 -36.63944 -36.31129 -35.19718 -32.32297 -31.70380 -30.55825 -28.62421 -27.33757 -27.01328 -23.56566 -23.03542 -22.81516 -21.60312 -21.06494 -19.29176 -18.78574 -17.95677 -17.52386 -16.75879 -16.40130 -16.33461 -16.01929 -15.89769 -15.56944 -14.87390 -14.72662 -14.45003 -14.22022 -14.00491 -13.81862 -13.46199 -13.34228 -13.12784 -13.05391 -12.81446 -12.77296 -12.42980 -12.32013 -12.07805 -11.84318 -11.68019 -11.47864 -11.37811 -11.08850 -9.92634 -9.51717 -9.36825 -8.77369 -8.14413 -6.44775 0.62054 0.87978 1.23050 1.36214 1.38207 1.47413 1.53441 2.06620 2.18733 2.45997 2.63968 3.49150 3.58811 3.86911 4.08114 4.08639 4.19400 4.29969 4.34353 4.47580 4.60310 4.67209 4.76477 4.81521 4.96721 5.00036 5.06144 5.08863 5.13404 5.19864 5.30959 5.35046 5.55753 5.69579 5.84433 5.90294 5.98723 6.05417 6.28069 6.57904 6.72595 6.76609 6.84014 7.00586 8.23383 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.004731 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.081793 B = 5916.372343 C = 7107.666653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.128 3.872 4 N -0.401 5.401 5 N -0.332 5.332 6 C 0.074 3.926 7 C -0.352 4.352 8 C 0.348 3.652 9 N -0.656 5.656 10 C 0.186 3.814 11 C -0.234 4.234 12 C -0.095 4.095 13 C -0.075 4.075 14 F -0.171 7.171 15 C 0.079 3.921 16 C -0.490 4.490 17 H 0.072 0.928 18 C 0.043 3.957 19 N -0.811 5.811 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.262 1.262 24 C -0.190 4.190 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.212 0.788 33 H 0.149 0.851 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.293 0.707 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -0.908 10.440 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.007 3.993 4 N -0.190 5.190 5 N -0.154 5.154 6 C -0.112 4.112 7 C -0.385 4.385 8 C 0.124 3.876 9 N -0.284 5.284 10 C 0.091 3.909 11 C -0.256 4.256 12 C -0.114 4.114 13 C -0.095 4.095 14 F -0.150 7.150 15 C 0.075 3.925 16 C -0.519 4.519 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.436 5.436 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.186 1.186 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.228 0.772 33 H 0.166 0.834 34 H 0.245 0.755 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.483 -0.946 11.419 13.165 hybrid contribution 0.291 0.371 -1.855 1.914 sum -6.193 -0.576 9.563 11.408 Atomic orbital electron populations 1.21673 0.92470 1.03020 1.02991 1.21858 0.98080 0.95163 1.02088 1.21919 0.73349 0.98976 1.05014 1.48854 1.06521 1.62009 1.01602 1.77266 1.02139 1.29426 1.06520 1.24001 0.95725 0.97049 0.94382 1.21161 0.95224 1.26267 0.95836 1.18261 0.91227 0.97155 0.80927 1.41130 1.08806 1.78897 0.99608 1.17383 0.90655 0.95844 0.87040 1.20438 0.97416 1.06961 1.00755 1.20626 0.99937 0.99407 0.91421 1.18175 0.93912 1.09175 0.88262 1.91234 1.65981 1.95550 1.62283 1.17674 0.90412 0.90387 0.93980 1.19674 0.94240 1.33743 1.04248 0.91030 1.26645 0.94499 0.96632 0.99589 1.69822 1.00394 1.34689 1.38729 0.85205 0.79093 0.77997 0.77596 1.18772 1.18341 1.18640 1.20744 1.03313 1.04994 0.92239 0.91817 0.91566 0.91098 0.93078 0.91887 0.87483 0.88852 0.77169 0.83369 0.75453 0.84938 0.84941 0.89642 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.13 -2.70 6.26 30.59 0.19 -2.51 16 3 C 0.13 2.83 6.29 86.38 0.54 3.38 16 4 N -0.40 -11.93 3.64 -344.67 -1.25 -13.19 16 5 N -0.33 -10.22 12.56 -57.12 -0.72 -10.94 16 6 C 0.07 2.11 12.00 85.20 1.02 3.13 16 7 C -0.35 -11.63 8.72 22.16 0.19 -11.44 16 8 C 0.35 11.73 7.48 131.24 0.98 12.72 16 9 N -0.66 -23.31 5.49 -185.29 -1.02 -24.33 16 10 C 0.19 7.92 6.24 38.15 0.24 8.15 16 11 C -0.23 -9.57 7.82 22.59 0.18 -9.39 16 12 C -0.09 -4.07 10.00 22.24 0.22 -3.85 16 13 C -0.07 -3.75 7.31 22.90 0.17 -3.59 16 14 F -0.17 -8.70 16.72 44.97 0.75 -7.94 16 15 C 0.08 4.20 5.57 -21.26 -0.12 4.08 16 16 C -0.49 -26.24 8.77 23.43 0.21 -26.04 16 17 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 18 C 0.04 2.08 5.16 85.24 0.44 2.52 16 19 N -0.81 -39.34 10.95 21.82 0.24 -39.10 16 20 Si 0.98 36.88 29.59 68.60 2.03 38.91 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 C -0.19 -9.26 8.59 22.84 0.20 -9.06 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 1.86 7.46 -2.39 -0.02 1.84 16 32 H 0.21 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.15 5.07 5.98 -2.91 -0.02 5.05 16 34 H 0.41 13.11 8.08 -92.71 -0.75 12.36 16 35 H 0.13 4.91 5.99 -2.91 -0.02 4.89 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.29 12.63 8.30 -92.70 -0.77 11.86 16 38 H 0.12 5.91 6.18 -2.91 -0.02 5.90 16 Total: -1.00 -59.89 325.08 5.55 -54.34 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.35 Total: 35.55 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 5.17 Total: -33.30 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.75 Total: -87.55 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.75 Total: -7.94 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -59.89 5.55 -54.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210923285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.783 kcal (2) G-P(sol) polarization free energy of solvation -59.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds