Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31647 * 118.77767 * 2 1 4 4 C 1.32821 * 120.59066 * 180.02562 * 3 2 1 5 5 N 1.37195 * 134.94377 * 180.02562 * 4 3 2 6 6 H 0.97006 * 126.27508 * 359.97438 * 5 4 3 7 7 C 1.36302 * 107.45470 * 179.97438 * 5 4 3 8 8 N 1.30141 * 110.00473 * 359.97438 * 7 5 4 9 9 C 1.35496 * 109.43872 * 0.02562 * 8 7 5 10 10 C 1.40291 * 134.70518 * 179.97438 * 9 8 7 11 11 O 1.35474 * 120.75187 * 0.02562 * 10 9 8 12 12 C 1.42901 * 116.99813 * 180.02562 * 11 10 9 13 13 H 1.08998 * 110.88521 * 32.41730 * 12 11 10 14 14 C 1.55150 * 111.03987 * 156.32806 * 12 11 10 15 15 C 1.54334 * 103.02037 * 153.39093 * 14 12 11 16 16 N 1.47016 * 107.26615 * 338.14075 * 15 14 12 17 17 C 1.36942 * 125.64835 * 178.84939 * 16 15 14 18 18 H 1.07994 * 120.00336 * 189.75698 * 17 16 15 19 19 C 1.38817 * 119.99692 * 9.74775 * 17 16 15 20 20 N 1.31616 * 119.99834 * 195.14705 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 15.14777 * 19 17 16 22 22 H 1.48505 * 109.46719 * 174.48369 * 21 19 17 23 23 H 1.48494 * 109.47103 * 294.48896 * 21 19 17 24 24 H 1.48501 * 109.46865 * 54.48899 * 21 19 17 25 25 C 1.47426 * 108.70406 * 358.58777 * 16 15 14 26 26 N 1.32066 * 118.77862 * 180.32343 * 2 1 3 27 27 H 1.09002 * 109.46525 * 90.00648 * 1 2 3 28 28 H 1.09000 * 109.47102 * 210.00375 * 1 2 3 29 29 H 1.08995 * 109.47504 * 330.00559 * 1 2 3 30 30 H 1.08001 * 125.00311 * 180.02562 * 7 5 4 31 31 H 1.09003 * 110.71772 * 271.95344 * 14 12 11 32 32 H 1.09005 * 110.71790 * 35.04545 * 14 12 11 33 33 H 1.08997 * 109.98840 * 218.66017 * 15 14 12 34 34 H 1.09006 * 109.77723 * 97.50195 * 15 14 12 35 35 H 0.96998 * 119.99858 * 2.97561 * 20 19 17 36 36 H 1.09001 * 110.36858 * 143.19669 * 25 16 15 37 37 H 1.09001 * 110.36213 * 265.40821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1408 1.1539 0.0000 4 6 3.4683 1.1959 -0.0005 5 7 4.4063 2.1971 -0.0002 6 1 4.2279 3.1507 0.0001 7 6 5.6347 1.6066 -0.0005 8 7 5.5061 0.3115 -0.0004 9 6 4.1901 -0.0109 -0.0006 10 6 3.4688 -1.2142 -0.0011 11 8 4.1113 -2.4069 -0.0009 12 6 3.2980 -3.5819 -0.0020 13 1 2.3704 -3.4119 -0.5487 14 6 4.0719 -4.7946 -0.5832 15 6 3.3894 -6.0006 0.0962 16 7 2.7377 -5.5029 1.3164 17 6 2.0033 -6.2562 2.1930 18 1 1.4340 -5.7741 2.9740 19 6 1.9903 -7.6395 2.0777 20 7 1.0737 -8.3437 2.7070 21 14 3.2739 -8.5013 1.0293 22 1 3.1271 -9.9717 1.1764 23 1 3.0841 -8.1248 -0.3946 24 1 4.6309 -8.0925 1.4727 25 6 3.0110 -4.0597 1.4433 26 7 2.1428 -1.1575 -0.0065 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 6.5764 2.1355 0.0000 31 1 3.9565 -4.8426 -1.6660 32 1 5.1263 -4.7455 -0.3109 33 1 4.1341 -6.7535 0.3543 34 1 2.6439 -6.4283 -0.5743 35 1 0.3814 -7.8940 3.2163 36 1 2.1408 -3.5429 1.8481 37 1 3.8803 -3.8929 2.0794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229438750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = 105.157619 kcal Electronic energy + Delta-G solvation = -22686.726217 eV Core-core repulsion = 19274.194119 eV Total energy + Delta-G solvation = -3412.532098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.78050 -40.07079 -38.75051 -36.81715 -33.72646 -32.48134 -32.34685 -31.67018 -29.62973 -28.40612 -27.71708 -24.78506 -23.55631 -22.88649 -21.92700 -21.10513 -20.43277 -19.57510 -18.28695 -17.54012 -17.41600 -16.48922 -15.75668 -15.34075 -15.16416 -14.78721 -14.56080 -14.08138 -13.88219 -13.57918 -13.43791 -12.68163 -12.47869 -12.40009 -12.27243 -12.05695 -11.74101 -11.50936 -11.28860 -11.06629 -10.76747 -10.43707 -10.23108 -9.98392 -9.72639 -9.35998 -9.33425 -8.97822 -8.69971 -8.42785 -7.04827 -6.30360 -3.21153 0.54077 1.07026 2.14217 2.46004 2.79758 3.42949 3.52287 3.61476 3.65307 3.73651 3.99261 4.06954 4.40578 4.63636 4.73035 4.97928 5.03966 5.18401 5.28393 5.39605 5.43388 5.43982 5.49105 5.56211 5.80155 5.81275 5.95442 6.14148 6.16402 6.34803 6.44802 6.53778 6.57419 6.72720 6.94968 7.16946 7.46652 7.65609 7.99530 8.34232 9.05249 9.55501 10.21837 11.21082 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.004138 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.903581 B = 6765.668051 C = 7458.254086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.384 3.616 3 N -0.548 5.548 4 C 0.304 3.696 5 N -0.581 5.581 6 H 0.431 0.569 7 C 0.251 3.749 8 N -0.448 5.448 9 C -0.080 4.080 10 C 0.448 3.552 11 O -0.271 6.271 12 C 0.068 3.932 13 H 0.103 0.897 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.608 5.608 17 C -0.322 4.322 18 H 0.079 0.921 19 C -0.021 4.021 20 N -0.927 5.927 21 Si 1.070 2.930 22 H -0.301 1.301 23 H -0.285 1.285 24 H -0.297 1.297 25 C 0.126 3.874 26 N -0.573 5.573 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 23.167 -8.710 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.115 3.885 3 N -0.275 5.275 4 C 0.061 3.939 5 N -0.197 5.197 6 H 0.271 0.729 7 C -0.037 4.037 8 N -0.166 5.166 9 C -0.203 4.203 10 C 0.253 3.747 11 O -0.171 6.171 12 C 0.011 3.989 13 H 0.121 0.879 14 C -0.161 4.161 15 C -0.012 4.012 16 N -0.337 5.337 17 C -0.449 4.449 18 H 0.097 0.903 19 C -0.221 4.221 20 N -0.569 5.569 21 Si 0.904 3.096 22 H -0.229 1.229 23 H -0.212 1.212 24 H -0.226 1.226 25 C -0.001 4.001 26 N -0.309 5.309 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.245 0.755 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.145 20.857 -9.131 23.583 hybrid contribution -0.250 2.663 0.608 2.743 sum 5.895 23.520 -8.523 25.702 Atomic orbital electron populations 1.20606 0.84663 1.04652 1.04186 1.22765 0.97453 0.80687 0.87582 1.67149 1.05317 1.30883 1.24109 1.18705 0.89037 0.87685 0.98482 1.42781 1.05294 1.09182 1.62481 0.72866 1.25560 0.88845 0.88987 1.00273 1.70356 1.16419 1.11918 1.17951 1.19179 0.91963 0.92503 1.16705 1.19344 0.86450 0.84963 0.83900 1.86347 1.35225 1.11697 1.83850 1.23946 0.94296 0.80662 0.99955 0.87862 1.22726 1.00449 0.92846 1.00056 1.22029 0.95422 0.94562 0.89222 1.44673 1.61288 1.03645 1.24086 1.20172 1.23592 0.90001 1.11126 0.90273 1.25843 1.02136 0.92474 1.01609 1.70905 1.14298 1.37316 1.34350 0.83847 0.75170 0.74811 0.75750 1.22876 1.21198 1.22577 1.21835 0.98935 0.86720 0.92560 1.68139 1.06779 1.30766 1.25203 0.89252 0.88799 0.89436 0.75520 0.90354 0.90144 0.94700 0.92945 0.92841 0.92827 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.30 36.01 0.37 -0.44 16 2 C 0.38 5.31 7.63 -157.09 -1.20 4.11 16 3 N -0.55 -7.40 10.35 -10.04 -0.10 -7.50 16 4 C 0.30 3.98 8.51 -155.83 -1.33 2.65 16 5 N -0.58 -4.78 6.20 -13.25 -0.08 -4.86 16 6 H 0.43 1.84 8.96 -40.82 -0.37 1.47 16 7 C 0.25 2.05 12.98 -89.51 -1.16 0.89 16 8 N -0.45 -6.16 11.28 -11.88 -0.13 -6.29 16 9 C -0.08 -1.24 7.25 -84.58 -0.61 -1.85 16 10 C 0.45 7.66 7.57 -16.39 -0.12 7.53 16 11 O -0.27 -4.94 9.95 -18.11 -0.18 -5.12 16 12 C 0.07 1.27 3.25 -24.59 -0.08 1.19 16 13 H 0.10 1.91 7.21 -51.93 -0.37 1.53 16 14 C -0.12 -2.21 6.68 -24.89 -0.17 -2.38 16 15 C 0.11 2.51 4.61 -3.06 -0.01 2.50 16 16 N -0.61 -15.51 3.33 -170.07 -0.57 -16.08 16 17 C -0.32 -9.46 10.56 -15.05 -0.16 -9.62 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 19 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 20 N -0.93 -29.51 13.71 55.49 0.76 -28.74 16 21 Si 1.07 27.15 24.52 -169.99 -4.17 22.98 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.28 -6.52 5.41 56.52 0.31 -6.22 16 24 H -0.30 -7.31 6.82 56.52 0.39 -6.93 16 25 C 0.13 2.77 6.97 -2.53 -0.02 2.75 16 26 N -0.57 -9.26 8.78 -10.55 -0.09 -9.36 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.23 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.82 3.89 -51.93 -0.20 0.62 16 34 H 0.05 1.19 6.70 -51.93 -0.35 0.84 16 35 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -37.01 307.87 -8.87 -45.88 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.36 Total: -2.15 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -4.59 Total: 6.60 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -0.22 Total: -72.84 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.18 Total: -5.12 kcal Atomic # 14 Polarization: 27.15 SS G_CDS: -4.17 Total: 22.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.01 -8.87 -45.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229438750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.040 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds