Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31647 * 118.77767 * 2 1 4 4 C 1.32821 * 120.59066 * 180.02562 * 3 2 1 5 5 N 1.37195 * 134.94377 * 180.02562 * 4 3 2 6 6 H 0.97006 * 126.27508 * 359.97438 * 5 4 3 7 7 C 1.36302 * 107.45470 * 179.97438 * 5 4 3 8 8 N 1.30141 * 110.00473 * 359.97438 * 7 5 4 9 9 C 1.35496 * 109.43872 * 0.02562 * 8 7 5 10 10 C 1.40291 * 134.70518 * 179.97438 * 9 8 7 11 11 O 1.35474 * 120.75187 * 0.02562 * 10 9 8 12 12 C 1.42901 * 116.99813 * 180.02562 * 11 10 9 13 13 H 1.08998 * 110.88521 * 32.41730 * 12 11 10 14 14 C 1.55150 * 111.03987 * 156.32806 * 12 11 10 15 15 C 1.54334 * 103.02037 * 153.39093 * 14 12 11 16 16 N 1.47016 * 107.26615 * 338.14075 * 15 14 12 17 17 C 1.36942 * 125.64835 * 178.84939 * 16 15 14 18 18 H 1.07994 * 120.00336 * 189.75698 * 17 16 15 19 19 C 1.38817 * 119.99692 * 9.74775 * 17 16 15 20 20 N 1.31616 * 119.99834 * 195.14705 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 15.14777 * 19 17 16 22 22 H 1.48505 * 109.46719 * 174.48369 * 21 19 17 23 23 H 1.48494 * 109.47103 * 294.48896 * 21 19 17 24 24 H 1.48501 * 109.46865 * 54.48899 * 21 19 17 25 25 C 1.47426 * 108.70406 * 358.58777 * 16 15 14 26 26 N 1.32066 * 118.77862 * 180.32343 * 2 1 3 27 27 H 1.09002 * 109.46525 * 90.00648 * 1 2 3 28 28 H 1.09000 * 109.47102 * 210.00375 * 1 2 3 29 29 H 1.08995 * 109.47504 * 330.00559 * 1 2 3 30 30 H 1.08001 * 125.00311 * 180.02562 * 7 5 4 31 31 H 1.09003 * 110.71772 * 271.95344 * 14 12 11 32 32 H 1.09005 * 110.71790 * 35.04545 * 14 12 11 33 33 H 1.08997 * 109.98840 * 218.66017 * 15 14 12 34 34 H 1.09006 * 109.77723 * 97.50195 * 15 14 12 35 35 H 0.96998 * 119.99858 * 2.97561 * 20 19 17 36 36 H 1.09001 * 110.36858 * 143.19669 * 25 16 15 37 37 H 1.09001 * 110.36213 * 265.40821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1408 1.1539 0.0000 4 6 3.4683 1.1959 -0.0005 5 7 4.4063 2.1971 -0.0002 6 1 4.2279 3.1507 0.0001 7 6 5.6347 1.6066 -0.0005 8 7 5.5061 0.3115 -0.0004 9 6 4.1901 -0.0109 -0.0006 10 6 3.4688 -1.2142 -0.0011 11 8 4.1113 -2.4069 -0.0009 12 6 3.2980 -3.5819 -0.0020 13 1 2.3704 -3.4119 -0.5487 14 6 4.0719 -4.7946 -0.5832 15 6 3.3894 -6.0006 0.0962 16 7 2.7377 -5.5029 1.3164 17 6 2.0033 -6.2562 2.1930 18 1 1.4340 -5.7741 2.9740 19 6 1.9903 -7.6395 2.0777 20 7 1.0737 -8.3437 2.7070 21 14 3.2739 -8.5013 1.0293 22 1 3.1271 -9.9717 1.1764 23 1 3.0841 -8.1248 -0.3946 24 1 4.6309 -8.0925 1.4727 25 6 3.0110 -4.0597 1.4433 26 7 2.1428 -1.1575 -0.0065 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 6.5764 2.1355 0.0000 31 1 3.9565 -4.8426 -1.6660 32 1 5.1263 -4.7455 -0.3109 33 1 4.1341 -6.7535 0.3543 34 1 2.6439 -6.4283 -0.5743 35 1 0.3814 -7.8940 3.2163 36 1 2.1408 -3.5429 1.8481 37 1 3.8803 -3.8929 2.0794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229438750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = 76.814925 kcal Electronic energy + Delta-G solvation = -22687.955248 eV Core-core repulsion = 19274.194119 eV Total energy + Delta-G solvation = -3413.761129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.70520 -41.24214 -40.00511 -38.43223 -34.92803 -34.40421 -33.29766 -32.69775 -31.46286 -29.99542 -28.73298 -26.32530 -25.09757 -23.86566 -22.83449 -22.75235 -22.15899 -20.51424 -19.76884 -19.42522 -18.41616 -17.62378 -17.22616 -16.77694 -16.42564 -15.93731 -15.73088 -15.48381 -15.29668 -15.04677 -14.63844 -14.32112 -14.17247 -13.91557 -13.26746 -13.24857 -13.11709 -12.98039 -12.76593 -12.51732 -12.29187 -11.82193 -11.59159 -11.54060 -11.41376 -11.07235 -10.74484 -10.71832 -10.42073 -9.46329 -9.18101 -8.69871 -5.52984 -0.46449 -0.00171 1.31346 1.41171 1.51496 1.59708 1.66196 1.75415 2.54243 2.55020 2.66304 3.02268 3.10838 3.14957 3.29501 3.48564 3.51934 3.67956 3.97930 4.02531 4.16612 4.28262 4.42417 4.58915 4.60764 4.67564 4.71738 4.72852 4.79631 4.87814 5.00281 5.07410 5.30492 5.45606 5.55813 5.92837 6.04288 6.22147 6.61586 6.76606 6.94240 7.34630 8.01003 8.83525 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.004138 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.903581 B = 6765.668051 C = 7458.254086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.365 3.635 3 N -0.542 5.542 4 C 0.292 3.708 5 N -0.561 5.561 6 H 0.452 0.548 7 C 0.294 3.706 8 N -0.504 5.504 9 C -0.098 4.098 10 C 0.414 3.586 11 O -0.280 6.280 12 C 0.087 3.913 13 H 0.103 0.897 14 C -0.110 4.110 15 C 0.102 3.898 16 N -0.627 5.627 17 C -0.318 4.318 18 H 0.044 0.956 19 C -0.075 4.075 20 N -0.959 5.959 21 Si 1.108 2.892 22 H -0.309 1.309 23 H -0.241 1.241 24 H -0.285 1.285 25 C 0.126 3.874 26 N -0.590 5.590 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.289 0.711 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.248 0.752 36 H 0.038 0.962 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 25.803 -10.947 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 N -0.268 5.268 4 C 0.047 3.953 5 N -0.179 5.179 6 H 0.297 0.703 7 C 0.006 3.994 8 N -0.224 5.224 9 C -0.221 4.221 10 C 0.221 3.779 11 O -0.181 6.181 12 C 0.029 3.971 13 H 0.121 0.879 14 C -0.148 4.148 15 C -0.022 4.022 16 N -0.356 5.356 17 C -0.446 4.446 18 H 0.062 0.938 19 C -0.268 4.268 20 N -0.603 5.603 21 Si 0.934 3.066 22 H -0.238 1.238 23 H -0.166 1.166 24 H -0.213 1.213 25 C 0.000 4.000 26 N -0.325 5.325 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.304 0.696 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.241 23.599 -11.388 27.468 hybrid contribution -0.874 2.138 1.399 2.700 sum 7.367 25.737 -9.989 28.574 Atomic orbital electron populations 1.20712 0.82317 1.05149 1.05454 1.23441 0.98850 0.80301 0.87781 1.67241 1.05606 1.30508 1.23473 1.19018 0.89198 0.88494 0.98543 1.42857 1.04257 1.09636 1.61157 0.70316 1.26813 0.90238 0.87701 0.94649 1.70359 1.15607 1.14830 1.21603 1.19376 0.93322 0.92555 1.16855 1.19627 0.87218 0.85003 0.86091 1.86316 1.35121 1.11858 1.84847 1.23549 0.94851 0.81693 0.96961 0.87900 1.22705 1.00336 0.89987 1.01737 1.22221 0.95367 0.96660 0.87965 1.44702 1.61311 1.04896 1.24716 1.20046 1.23053 0.90606 1.10920 0.93777 1.27216 1.03247 0.93545 1.02761 1.71013 1.15394 1.37660 1.36219 0.83445 0.73068 0.73174 0.76878 1.23769 1.16581 1.21268 1.21854 0.97866 0.85006 0.95280 1.68109 1.06840 1.32142 1.25456 0.87482 0.89491 0.87648 0.69591 0.86634 0.88937 0.94609 0.92937 0.94335 0.94343 0.95945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.30 71.24 0.73 -0.74 16 2 C 0.36 9.95 7.63 138.71 1.06 11.00 16 3 N -0.54 -13.95 10.35 -185.66 -1.92 -15.87 16 4 C 0.29 7.13 8.51 133.91 1.14 8.27 16 5 N -0.56 -7.19 6.20 -195.82 -1.21 -8.40 16 6 H 0.45 1.92 8.96 -92.70 -0.83 1.09 16 7 C 0.29 3.57 12.98 179.96 2.34 5.90 16 8 N -0.50 -12.79 11.28 -191.49 -2.16 -14.95 16 9 C -0.10 -2.96 7.25 39.66 0.29 -2.67 16 10 C 0.41 14.21 7.57 85.06 0.64 14.85 16 11 O -0.28 -10.14 9.95 -87.73 -0.87 -11.01 16 12 C 0.09 3.19 3.25 31.98 0.10 3.29 16 13 H 0.10 3.78 7.21 -2.39 -0.02 3.76 16 14 C -0.11 -3.68 6.68 31.78 0.21 -3.47 16 15 C 0.10 4.36 4.61 86.73 0.40 4.76 16 16 N -0.63 -32.33 3.33 -691.97 -2.30 -34.64 16 17 C -0.32 -19.36 10.56 84.03 0.89 -18.47 16 18 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 19 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.96 -63.10 13.71 21.65 0.30 -62.80 16 21 Si 1.11 54.26 24.52 68.60 1.68 55.94 16 22 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 23 H -0.24 -10.13 5.41 99.48 0.54 -9.59 16 24 H -0.28 -13.30 6.82 99.48 0.68 -12.62 16 25 C 0.13 5.67 6.97 86.85 0.61 6.28 16 26 N -0.59 -19.28 8.78 -300.03 -2.63 -21.92 16 27 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.29 -0.46 8.06 -2.91 -0.02 -0.49 16 31 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.04 1.58 3.89 -2.39 -0.01 1.57 16 34 H 0.05 2.25 6.70 -2.38 -0.02 2.24 16 35 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -85.32 307.87 -0.19 -85.51 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 0.06 Total: 3.27 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 8.87 Total: 24.88 kcal Atomic # 7 Polarization: -148.65 SS G_CDS: -9.94 Total: -158.58 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.87 Total: -11.01 kcal Atomic # 14 Polarization: 54.26 SS G_CDS: 1.68 Total: 55.94 kcal Total: -85.32 -0.19 -85.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229438750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.325 kcal (2) G-P(sol) polarization free energy of solvation -85.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds