Wall clock time and date at job start Tue Mar 31 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47049 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46745 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99786 * 269.99849 * 5 4 3 7 7 H 1.08001 * 120.00485 * 320.88109 * 6 5 4 8 8 C 1.38812 * 119.99765 * 140.88246 * 6 5 4 9 9 N 1.31619 * 120.00156 * 336.85678 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 156.86021 * 8 6 5 11 11 H 1.48502 * 109.47267 * 89.99639 * 10 8 6 12 12 H 1.48495 * 109.47381 * 210.00100 * 10 8 6 13 13 H 1.48506 * 109.46828 * 329.99903 * 10 8 6 14 14 C 1.46495 * 120.00213 * 90.00633 * 5 4 3 15 15 C 1.50695 * 109.47522 * 84.13644 * 14 5 4 16 16 C 1.38848 * 119.91123 * 85.16448 * 15 14 5 17 17 C 1.36089 * 120.59869 * 180.02562 * 16 15 14 18 18 C 1.41176 * 120.45312 * 0.02562 * 17 16 15 19 19 C 1.45386 * 129.34353 * 180.02562 * 18 17 16 20 20 C 1.31823 * 114.89783 * 179.97438 * 19 18 17 21 21 S 1.75301 * 111.40115 * 359.97438 * 20 19 18 22 22 C 1.39749 * 118.82834 * 359.97438 * 18 17 16 23 23 C 1.37467 * 119.90632 * 264.95883 * 15 14 5 24 24 H 1.09007 * 109.46602 * 59.99858 * 1 2 3 25 25 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47288 * 300.00477 * 1 2 3 27 27 H 1.08997 * 109.47363 * 240.00306 * 2 1 3 28 28 H 1.08995 * 109.46899 * 119.99767 * 2 1 3 29 29 H 1.09001 * 109.47193 * 60.00005 * 3 2 1 30 30 H 1.08999 * 109.47509 * 300.00261 * 3 2 1 31 31 H 1.08997 * 109.47117 * 60.00525 * 4 3 2 32 32 H 1.08995 * 109.47256 * 299.99918 * 4 3 2 33 33 H 0.96999 * 120.00452 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47021 * 324.13222 * 14 5 4 35 35 H 1.09007 * 109.47148 * 204.13764 * 14 5 4 36 36 H 1.08003 * 119.69927 * 0.02562 * 16 15 14 37 37 H 1.07996 * 119.77340 * 180.02562 * 17 16 15 38 38 H 1.08004 * 122.55581 * 359.97438 * 19 18 17 39 39 H 1.08003 * 124.30299 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.91138 * 359.92091 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.7243 2.9353 -2.0149 8 6 3.9568 4.8112 -1.3189 9 7 3.0450 5.3463 -0.5349 10 14 4.8065 5.8571 -2.6126 11 1 4.0374 5.7966 -3.8814 12 1 4.8774 7.2641 -2.1432 13 1 6.1804 5.3418 -2.8415 14 6 4.3020 3.5140 1.2702 15 6 5.6762 3.1611 1.7782 16 6 6.7824 3.8733 1.3344 17 6 8.0298 3.5662 1.7836 18 6 8.2189 2.5167 2.7087 19 6 9.4493 2.0290 3.3104 20 6 9.2965 1.0226 4.1480 21 16 7.6118 0.5602 4.2918 22 6 7.1038 1.8016 3.1537 23 6 5.8306 2.1377 2.6830 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.8145 6.2838 -0.6286 34 1 3.5543 3.2057 2.0009 35 1 4.2371 4.5912 1.1163 36 1 6.6517 4.6783 0.6264 37 1 8.8808 4.1292 1.4298 38 1 10.4151 2.4584 3.0880 39 1 10.1063 0.5444 4.6790 40 1 4.9665 1.5896 3.0288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232616782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:05 Heat of formation + Delta-G solvation = 44.126514 kcal Electronic energy + Delta-G solvation = -20402.966649 eV Core-core repulsion = 17501.788507 eV Total energy + Delta-G solvation = -2901.178142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.17443 -36.51949 -34.91565 -33.74391 -31.42228 -30.50985 -29.71848 -27.69605 -25.53718 -23.87413 -23.01330 -21.83669 -20.91511 -20.19903 -19.76584 -17.42691 -16.69615 -15.45174 -15.06646 -14.81766 -14.73615 -14.15538 -13.91122 -13.70640 -13.35264 -13.31336 -13.16282 -13.07188 -12.23397 -12.05555 -11.85184 -11.52483 -11.33281 -11.10825 -10.84256 -10.76849 -10.65234 -10.53489 -10.46162 -10.33095 -10.22696 -9.98875 -9.89408 -9.63221 -9.28594 -8.53562 -7.93732 -7.39311 -6.64501 -5.90365 -3.41911 1.10605 1.77050 1.80783 2.24402 2.62066 3.30249 3.39233 3.42619 4.20558 4.44309 4.86308 5.15938 5.22836 5.35667 5.46593 5.48373 5.63616 5.68545 5.74088 5.76861 5.85157 6.06365 6.08154 6.16161 6.23161 6.23747 6.39363 6.42811 6.46447 6.50672 6.63382 6.66250 6.74475 6.76205 6.93683 7.09993 7.24568 7.32945 7.41170 7.51997 7.77284 8.45616 9.09799 9.71772 10.33082 11.11804 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.005707 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.070626 B = 4905.170139 C = 6843.581996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.573 5.573 6 C -0.260 4.260 7 H 0.059 0.941 8 C 0.018 3.982 9 N -0.879 5.879 10 Si 0.888 3.112 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.183 3.817 15 C -0.049 4.049 16 C -0.091 4.091 17 C -0.087 4.087 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.208 4.208 21 S 0.047 5.953 22 C -0.125 4.125 23 C -0.097 4.097 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.256 0.744 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.274 -6.957 7.389 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.291 5.291 6 C -0.390 4.390 7 H 0.077 0.923 8 C -0.183 4.183 9 N -0.519 5.519 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.056 3.944 15 C -0.055 4.055 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.138 4.138 20 C -0.341 4.341 21 S 0.309 5.691 22 C -0.240 4.240 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.494 -7.913 8.235 12.674 hybrid contribution 1.217 1.618 -1.467 2.501 sum 6.711 -6.295 6.768 11.422 Atomic orbital electron populations 1.21755 0.96797 1.00360 1.01674 1.21532 0.95095 0.98672 1.00846 1.22126 0.98934 0.93873 1.02220 1.20929 0.91469 0.87095 0.98227 1.43699 1.73554 1.10352 1.01526 1.18980 1.35150 0.93408 0.91442 0.92340 1.25179 0.96092 0.99295 0.97747 1.70075 1.28153 1.12992 1.40711 0.86549 0.80236 0.79851 0.81720 1.21113 1.21349 1.20125 1.19916 0.86856 1.00783 0.86833 1.21311 0.99776 0.92780 0.91649 1.20734 0.91577 1.00061 0.98725 1.20648 0.97606 0.96036 0.96470 1.19181 0.91361 0.99231 1.01275 1.20931 0.97889 0.97293 0.97695 1.24831 0.99658 1.03518 1.06138 1.83915 1.00410 1.37422 1.47367 1.22584 0.97746 1.00768 1.02912 1.20360 0.93601 0.98863 0.99261 0.92943 0.93753 0.93111 0.92746 0.93012 0.93041 0.91743 0.94037 0.94963 0.93408 0.94590 0.88451 0.85422 0.86435 0.84421 0.82268 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.54 5.54 -26.73 -0.15 -2.69 16 4 C 0.15 3.08 5.69 -4.04 -0.02 3.05 16 5 N -0.57 -13.49 2.40 -174.61 -0.42 -13.91 16 6 C -0.26 -6.74 9.42 -15.06 -0.14 -6.88 16 7 H 0.06 1.55 7.93 -52.49 -0.42 1.13 16 8 C 0.02 0.48 4.82 -17.43 -0.08 0.39 16 9 N -0.88 -23.89 11.80 55.49 0.65 -23.23 16 10 Si 0.89 20.51 29.61 -169.99 -5.03 15.48 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.18 4.06 5.36 -5.20 -0.03 4.03 16 15 C -0.05 -0.97 5.45 -104.68 -0.57 -1.54 16 16 C -0.09 -1.74 9.62 -40.13 -0.39 -2.13 16 17 C -0.09 -1.48 10.05 -39.24 -0.39 -1.87 16 18 C -0.10 -1.72 6.04 -105.38 -0.64 -2.35 16 19 C -0.11 -1.46 10.39 -38.64 -0.40 -1.87 16 20 C -0.21 -2.61 11.02 28.84 0.32 -2.30 16 21 S 0.05 0.67 23.23 -107.50 -2.50 -1.83 16 22 C -0.13 -2.15 6.48 -38.42 -0.25 -2.40 16 23 C -0.10 -1.77 9.59 -39.26 -0.38 -2.15 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.86 8.04 -51.93 -0.42 0.45 16 32 H 0.03 0.62 7.97 -51.93 -0.41 0.21 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.04 0.77 8.02 -51.93 -0.42 0.36 16 35 H 0.10 2.42 5.78 -51.93 -0.30 2.12 16 36 H 0.13 2.53 8.06 -52.48 -0.42 2.11 16 37 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 40 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -27.21 347.00 -11.15 -38.36 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.17 Total: 2.38 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.91 Total: -22.47 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.24 Total: -37.14 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.21 -11.15 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232616782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.482 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds