Wall clock time and date at job start Tue Mar 31 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47049 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46745 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99786 * 269.99849 * 5 4 3 7 7 H 1.08001 * 120.00485 * 320.88109 * 6 5 4 8 8 C 1.38812 * 119.99765 * 140.88246 * 6 5 4 9 9 N 1.31619 * 120.00156 * 336.85678 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 156.86021 * 8 6 5 11 11 H 1.48502 * 109.47267 * 89.99639 * 10 8 6 12 12 H 1.48495 * 109.47381 * 210.00100 * 10 8 6 13 13 H 1.48506 * 109.46828 * 329.99903 * 10 8 6 14 14 C 1.46495 * 120.00213 * 90.00633 * 5 4 3 15 15 C 1.50695 * 109.47522 * 84.13644 * 14 5 4 16 16 C 1.38848 * 119.91123 * 85.16448 * 15 14 5 17 17 C 1.36089 * 120.59869 * 180.02562 * 16 15 14 18 18 C 1.41176 * 120.45312 * 0.02562 * 17 16 15 19 19 C 1.45386 * 129.34353 * 180.02562 * 18 17 16 20 20 C 1.31823 * 114.89783 * 179.97438 * 19 18 17 21 21 S 1.75301 * 111.40115 * 359.97438 * 20 19 18 22 22 C 1.39749 * 118.82834 * 359.97438 * 18 17 16 23 23 C 1.37467 * 119.90632 * 264.95883 * 15 14 5 24 24 H 1.09007 * 109.46602 * 59.99858 * 1 2 3 25 25 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47288 * 300.00477 * 1 2 3 27 27 H 1.08997 * 109.47363 * 240.00306 * 2 1 3 28 28 H 1.08995 * 109.46899 * 119.99767 * 2 1 3 29 29 H 1.09001 * 109.47193 * 60.00005 * 3 2 1 30 30 H 1.08999 * 109.47509 * 300.00261 * 3 2 1 31 31 H 1.08997 * 109.47117 * 60.00525 * 4 3 2 32 32 H 1.08995 * 109.47256 * 299.99918 * 4 3 2 33 33 H 0.96999 * 120.00452 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47021 * 324.13222 * 14 5 4 35 35 H 1.09007 * 109.47148 * 204.13764 * 14 5 4 36 36 H 1.08003 * 119.69927 * 0.02562 * 16 15 14 37 37 H 1.07996 * 119.77340 * 180.02562 * 17 16 15 38 38 H 1.08004 * 122.55581 * 359.97438 * 19 18 17 39 39 H 1.08003 * 124.30299 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.91138 * 359.92091 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.7243 2.9353 -2.0149 8 6 3.9568 4.8112 -1.3189 9 7 3.0450 5.3463 -0.5349 10 14 4.8065 5.8571 -2.6126 11 1 4.0374 5.7966 -3.8814 12 1 4.8774 7.2641 -2.1432 13 1 6.1804 5.3418 -2.8415 14 6 4.3020 3.5140 1.2702 15 6 5.6762 3.1611 1.7782 16 6 6.7824 3.8733 1.3344 17 6 8.0298 3.5662 1.7836 18 6 8.2189 2.5167 2.7087 19 6 9.4493 2.0290 3.3104 20 6 9.2965 1.0226 4.1480 21 16 7.6118 0.5602 4.2918 22 6 7.1038 1.8016 3.1537 23 6 5.8306 2.1377 2.6830 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.8145 6.2838 -0.6286 34 1 3.5543 3.2057 2.0009 35 1 4.2371 4.5912 1.1163 36 1 6.6517 4.6783 0.6264 37 1 8.8808 4.1292 1.4298 38 1 10.4151 2.4584 3.0880 39 1 10.1063 0.5444 4.6790 40 1 4.9665 1.5896 3.0288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232616782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:04 Heat of formation + Delta-G solvation = 33.507363 kcal Electronic energy + Delta-G solvation = -20403.427130 eV Core-core repulsion = 17501.788507 eV Total energy + Delta-G solvation = -2901.638623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53116 -38.14996 -36.21902 -35.28106 -33.23907 -31.92175 -31.09418 -29.25381 -27.21633 -25.50173 -24.33437 -23.20810 -22.39468 -21.64635 -21.18697 -18.91820 -18.33147 -16.79939 -16.71252 -16.32755 -16.26398 -15.61960 -15.49644 -15.33496 -14.69138 -14.58176 -14.48815 -14.37533 -13.76670 -13.43799 -13.24184 -13.16411 -13.01180 -12.65079 -12.50510 -12.23934 -12.07259 -12.02072 -11.94006 -11.86831 -11.74832 -11.55230 -11.45902 -11.26277 -10.56827 -10.51639 -9.28374 -8.59206 -8.56328 -7.87516 -5.43799 -0.12742 0.37851 0.63897 1.12271 1.40893 1.45647 1.47609 1.56315 2.49814 2.81896 3.23688 3.74941 3.78751 3.90490 4.14514 4.17250 4.30591 4.34667 4.43790 4.47442 4.55921 4.57715 4.68728 4.86244 4.92935 4.99394 5.00599 5.05724 5.07258 5.09263 5.17386 5.18965 5.37505 5.41319 5.52678 5.55141 5.58398 5.64155 5.74821 5.88319 6.02046 6.47503 7.15136 7.82127 8.39210 9.11688 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.005707 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.070626 B = 4905.170139 C = 6843.581996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.148 3.852 5 N -0.587 5.587 6 C -0.266 4.266 7 H 0.048 0.952 8 C -0.022 4.022 9 N -0.909 5.909 10 Si 0.944 3.056 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.194 3.806 15 C -0.070 4.070 16 C -0.111 4.111 17 C -0.084 4.084 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.188 4.188 21 S 0.068 5.932 22 C -0.152 4.152 23 C -0.097 4.097 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.253 0.747 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.200 0.800 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -8.862 8.662 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.159 4.159 4 C 0.023 3.977 5 N -0.307 5.307 6 C -0.397 4.397 7 H 0.066 0.934 8 C -0.220 4.220 9 N -0.551 5.551 10 Si 0.772 3.228 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.196 1.196 14 C 0.068 3.932 15 C -0.076 4.076 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.151 4.151 20 C -0.322 4.322 21 S 0.330 5.670 22 C -0.266 4.266 23 C -0.121 4.121 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.217 0.783 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.847 -9.840 9.521 15.782 hybrid contribution 0.600 2.084 -1.713 2.764 sum 8.447 -7.756 7.808 13.874 Atomic orbital electron populations 1.21732 0.95395 1.01950 1.01275 1.21466 0.96310 0.95675 1.01933 1.21943 0.97956 0.96262 0.99730 1.21001 0.92244 0.85901 0.98601 1.43865 1.74430 1.11096 1.01298 1.19067 1.34627 0.93850 0.92134 0.93434 1.25737 0.96585 1.00106 0.99600 1.70178 1.29613 1.12853 1.42499 0.85664 0.79360 0.78284 0.79493 1.21160 1.21395 1.19629 1.19627 0.88533 0.98766 0.86314 1.20954 0.98425 0.94530 0.93672 1.20654 0.92705 1.00269 0.99481 1.20871 0.97327 0.96207 0.95996 1.19641 0.92767 0.98444 1.00477 1.21154 0.97885 0.97988 0.98067 1.25359 0.99509 1.02391 1.04899 1.83902 1.01743 1.35723 1.45652 1.22868 0.97469 1.02268 1.04020 1.20343 0.94716 0.98237 0.98783 0.93729 0.91109 0.93224 0.92046 0.91436 0.94570 0.95083 0.94437 0.93540 0.93803 0.94994 0.91552 0.87234 0.83718 0.81283 0.78289 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.12 -3.49 5.93 30.59 0.18 -3.31 16 3 C -0.12 -4.74 5.54 30.60 0.17 -4.57 16 4 C 0.15 6.28 5.69 86.38 0.49 6.78 16 5 N -0.59 -28.94 2.40 -706.35 -1.69 -30.63 16 6 C -0.27 -14.40 9.42 84.03 0.79 -13.61 16 7 H 0.05 2.63 7.93 -2.91 -0.02 2.60 16 8 C -0.02 -1.17 4.82 84.86 0.41 -0.76 16 9 N -0.91 -51.82 11.80 21.65 0.26 -51.57 16 10 Si 0.94 43.58 29.61 68.60 2.03 45.61 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.19 9.10 5.36 85.63 0.46 9.56 16 15 C -0.07 -2.89 5.45 -19.90 -0.11 -3.00 16 16 C -0.11 -4.36 9.62 21.92 0.21 -4.15 16 17 C -0.08 -2.76 10.05 22.49 0.23 -2.53 16 18 C -0.11 -3.26 6.04 -20.35 -0.12 -3.38 16 19 C -0.12 -2.79 10.39 23.33 0.24 -2.55 16 20 C -0.19 -3.82 11.02 67.04 0.74 -3.08 16 21 S 0.07 1.71 23.23 -56.49 -1.31 0.40 16 22 C -0.15 -4.97 6.48 23.03 0.15 -4.82 16 23 C -0.10 -3.56 9.59 22.48 0.22 -3.35 16 24 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 32 H 0.05 1.82 7.97 -2.39 -0.02 1.80 16 33 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.03 1.46 8.02 -2.39 -0.02 1.44 16 35 H 0.07 3.53 5.78 -2.38 -0.01 3.51 16 36 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -61.14 347.00 5.05 -56.09 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.00 Total: 16.06 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 4.77 Total: -35.95 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.44 Total: -82.20 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -61.14 5.05 -56.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232616782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.594 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds