Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47148 * 120.00516 * 3 2 1 6 6 H 1.48502 * 109.46999 * 240.00362 * 3 2 1 7 7 C 1.38809 * 119.99835 * 180.27701 * 2 1 3 8 8 H 1.08003 * 119.99622 * 151.11278 * 7 2 1 9 9 N 1.36932 * 120.00189 * 331.11853 * 7 2 1 10 10 C 1.47426 * 125.65017 * 342.72065 * 9 7 2 11 11 C 1.54907 * 104.83254 * 204.08980 * 10 9 7 12 12 C 1.55160 * 101.58398 * 322.99337 * 11 10 9 13 13 H 1.09006 * 110.71510 * 277.13580 * 12 11 10 14 14 O 1.42893 * 110.72109 * 154.04230 * 12 11 10 15 15 C 1.35983 * 117.00032 * 156.86787 * 14 12 11 16 16 C 1.38723 * 120.06511 * 2.41918 * 15 14 12 17 17 C 1.37950 * 119.89578 * 179.84848 * 16 15 14 18 18 C 1.39120 * 120.29223 * 0.50460 * 17 16 15 19 19 C 1.38349 * 119.79042 * 359.57433 * 18 17 16 20 20 C 1.38505 * 119.87577 * 0.26417 * 19 18 17 21 21 C 1.50779 * 121.41268 * 180.53650 * 19 18 17 22 22 C 1.53072 * 109.69449 * 342.10725 * 21 19 18 23 23 C 1.53409 * 108.30222 * 48.21409 * 22 21 19 24 24 O 1.35946 * 118.43376 * 179.48271 * 18 17 16 25 25 C 1.47025 * 125.64505 * 162.40951 * 9 7 2 26 26 H 0.97005 * 120.00322 * 175.27863 * 1 2 3 27 27 H 1.08993 * 110.36129 * 322.93509 * 10 9 7 28 28 H 1.09006 * 110.36155 * 85.14206 * 10 9 7 29 29 H 1.09001 * 111.00237 * 81.06348 * 11 10 9 30 30 H 1.08993 * 111.00450 * 204.91457 * 11 10 9 31 31 H 1.07999 * 120.05266 * 0.10061 * 16 15 14 32 32 H 1.08003 * 119.85048 * 180.23177 * 17 16 15 33 33 H 1.08003 * 119.86146 * 179.78870 * 20 19 18 34 34 H 1.08999 * 109.43139 * 102.17823 * 21 19 18 35 35 H 1.09002 * 109.43410 * 222.03651 * 21 19 18 36 36 H 1.08997 * 109.70349 * 288.50795 * 22 21 19 37 37 H 1.08999 * 109.72485 * 167.92650 * 22 21 19 38 38 H 1.08993 * 109.68539 * 175.56315 * 23 22 21 39 39 H 1.09000 * 109.71570 * 55.01825 * 23 22 21 40 40 H 1.08996 * 109.88594 * 298.39365 * 25 9 7 41 41 H 1.09004 * 109.88012 * 59.56397 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2021 -0.0058 8 1 2.9895 -1.2581 -0.4580 9 7 1.4533 -2.3170 0.5616 10 6 0.3237 -2.3260 1.5088 11 6 0.4785 -3.6499 2.2981 12 6 0.9872 -4.6135 1.1934 13 1 0.1540 -5.0046 0.6093 14 8 1.7470 -5.6806 1.7641 15 6 1.8450 -6.8260 1.0377 16 6 1.2649 -6.9031 -0.2201 17 6 1.3690 -8.0657 -0.9552 18 6 2.0446 -9.1658 -0.4366 19 6 2.6215 -9.0890 0.8185 20 6 2.5193 -7.9202 1.5545 21 6 3.3722 -10.2548 1.4109 22 6 3.0007 -11.5396 0.6664 23 6 3.1004 -11.2692 -0.8404 24 8 2.1151 -10.2958 -1.1891 25 6 1.8788 -3.7038 0.3220 26 1 -0.4851 -0.8372 -0.0691 27 1 0.3876 -1.4723 2.1834 28 1 -0.6236 -2.3124 0.9695 29 1 1.2148 -3.5458 3.0950 30 1 -0.4805 -3.9823 2.6953 31 1 0.7361 -6.0528 -0.6248 32 1 0.9204 -8.1236 -1.9359 33 1 2.9668 -7.8617 2.5357 34 1 4.4442 -10.0798 1.3198 35 1 3.1104 -10.3572 2.4641 36 1 1.9815 -11.8302 0.9209 37 1 3.6901 -12.3374 0.9428 38 1 2.9168 -12.1913 -1.3918 39 1 4.0933 -10.8891 -1.0808 40 1 1.7504 -3.9544 -0.7309 41 1 2.9231 -3.8261 0.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233588351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = -30.242836 kcal Electronic energy + Delta-G solvation = -22674.035406 eV Core-core repulsion = 19326.879497 eV Total energy + Delta-G solvation = -3347.155910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83733 -39.47118 -37.29144 -35.87540 -34.44018 -32.50612 -30.65659 -29.78692 -29.05144 -27.45831 -25.80668 -24.44542 -23.55681 -22.68023 -20.98619 -20.33214 -19.62752 -17.93323 -17.69232 -17.51191 -16.68632 -15.64583 -15.31861 -15.04953 -14.57719 -14.42932 -14.03773 -13.89424 -13.68114 -13.32123 -13.22570 -13.14764 -12.99258 -12.83119 -12.35819 -11.99630 -11.47876 -11.37475 -11.22669 -11.04851 -10.85501 -10.71681 -10.56554 -10.51364 -10.07978 -10.01912 -9.95517 -9.55059 -8.88560 -8.42757 -7.64929 -6.97759 -6.14878 -3.17678 1.21331 1.48205 3.17295 3.41097 3.49819 3.54543 3.69977 3.71958 4.40149 4.43251 4.54352 4.57623 4.73022 4.92653 4.94898 5.07092 5.12837 5.16159 5.25478 5.29266 5.33804 5.39639 5.43742 5.54741 5.57607 5.72676 5.72941 5.87245 5.95213 6.05039 6.12289 6.27348 6.32609 6.37198 6.50884 6.54789 6.66751 6.87731 6.95822 7.34179 7.68580 7.77319 8.45717 8.97826 9.78114 10.31796 11.19171 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.003088 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.963986 B = 9063.861926 C = 9246.094055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.339 4.339 8 H 0.065 0.935 9 N -0.599 5.599 10 C 0.144 3.856 11 C -0.127 4.127 12 C 0.070 3.930 13 H 0.078 0.922 14 O -0.304 6.304 15 C 0.114 3.886 16 C -0.174 4.174 17 C -0.104 4.104 18 C 0.084 3.916 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.077 4.077 22 C -0.159 4.159 23 C 0.061 3.939 24 O -0.318 6.318 25 C 0.118 3.882 26 H 0.268 0.732 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -22.527 2.336 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.165 4.165 12 C 0.014 3.986 13 H 0.096 0.904 14 O -0.217 6.217 15 C 0.068 3.932 16 C -0.193 4.193 17 C -0.123 4.123 18 C 0.040 3.960 19 C -0.123 4.123 20 C -0.145 4.145 21 C -0.114 4.114 22 C -0.197 4.197 23 C -0.014 4.014 24 O -0.233 6.233 25 C -0.008 4.008 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.064 -20.786 2.371 21.311 hybrid contribution 0.268 -1.699 -0.213 1.733 sum 4.332 -22.485 2.158 23.000 Atomic orbital electron populations 1.70810 1.06640 1.30112 1.47955 1.25803 0.96400 1.01130 0.99273 0.83501 0.74819 0.75835 0.76268 1.21024 1.22025 1.21938 1.19731 1.00267 0.87815 1.38883 0.91673 1.44444 1.38424 1.00281 1.49606 1.21564 0.91528 0.93856 0.91192 1.22947 1.00603 0.95548 0.97418 1.23589 0.93252 0.85371 0.96438 0.90379 1.86141 1.69684 1.20973 1.44895 1.18888 0.96385 0.87015 0.90907 1.21214 1.03989 0.99220 0.94856 1.20372 1.01212 0.90314 1.00412 1.18486 1.00394 0.86848 0.90260 1.19510 1.02833 0.96104 0.93892 1.20087 1.02699 0.90621 1.01051 1.20467 0.99652 0.91317 0.99982 1.22231 1.03423 0.98168 0.95844 1.22908 0.91528 0.91413 0.95568 1.85999 1.55318 1.27565 1.54446 1.21749 0.96874 0.86227 0.95927 0.92039 0.92359 0.95219 0.90364 0.91018 0.84389 0.85056 0.85116 0.90283 0.89876 0.90437 0.89852 0.87793 0.92003 0.95465 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.00 55.49 0.72 -26.94 16 2 C -0.02 -0.70 5.07 -17.43 -0.09 -0.79 16 3 Si 1.07 25.53 30.00 -169.99 -5.10 20.43 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.34 -9.78 10.01 -15.06 -0.15 -9.93 16 8 H 0.07 1.88 7.97 -52.48 -0.42 1.46 16 9 N -0.60 -15.58 3.28 -170.06 -0.56 -16.14 16 10 C 0.14 3.35 5.33 -2.53 -0.01 3.34 16 11 C -0.13 -2.35 6.81 -24.58 -0.17 -2.52 16 12 C 0.07 1.28 2.74 -24.89 -0.07 1.21 16 13 H 0.08 1.33 6.15 -51.93 -0.32 1.01 16 14 O -0.30 -5.32 9.88 -19.69 -0.19 -5.51 16 15 C 0.11 1.79 6.67 -39.30 -0.26 1.53 16 16 C -0.17 -2.60 8.94 -39.51 -0.35 -2.96 16 17 C -0.10 -1.44 9.93 -39.36 -0.39 -1.83 16 18 C 0.08 1.12 6.47 -39.21 -0.25 0.87 16 19 C -0.12 -1.51 5.75 -104.44 -0.60 -2.11 16 20 C -0.13 -1.72 9.60 -39.38 -0.38 -2.10 16 21 C -0.08 -0.67 5.86 -27.81 -0.16 -0.84 16 22 C -0.16 -1.14 6.19 -26.48 -0.16 -1.31 16 23 C 0.06 0.50 7.03 37.37 0.26 0.76 16 24 O -0.32 -3.85 10.27 -19.57 -0.20 -4.05 16 25 C 0.12 2.60 6.86 -3.06 -0.02 2.58 16 26 H 0.27 8.09 6.07 -40.82 -0.25 7.84 16 27 H 0.06 1.46 7.99 -51.93 -0.42 1.05 16 28 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.14 2.06 5.71 -52.49 -0.30 1.76 16 32 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.03 0.60 7.94 -51.93 -0.41 0.19 16 41 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -32.42 328.97 -9.10 -41.52 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.91 Total: -0.19 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.81 Total: -14.08 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.16 Total: -43.08 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.40 Total: -9.56 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.42 -9.10 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233588351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.276 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds