Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47148 * 120.00516 * 3 2 1 6 6 H 1.48502 * 109.46999 * 240.00362 * 3 2 1 7 7 C 1.38809 * 119.99835 * 180.27701 * 2 1 3 8 8 H 1.08003 * 119.99622 * 151.11278 * 7 2 1 9 9 N 1.36932 * 120.00189 * 331.11853 * 7 2 1 10 10 C 1.47426 * 125.65017 * 342.72065 * 9 7 2 11 11 C 1.54907 * 104.83254 * 204.08980 * 10 9 7 12 12 C 1.55160 * 101.58398 * 322.99337 * 11 10 9 13 13 H 1.09006 * 110.71510 * 277.13580 * 12 11 10 14 14 O 1.42893 * 110.72109 * 154.04230 * 12 11 10 15 15 C 1.35983 * 117.00032 * 156.86787 * 14 12 11 16 16 C 1.38723 * 120.06511 * 2.41918 * 15 14 12 17 17 C 1.37950 * 119.89578 * 179.84848 * 16 15 14 18 18 C 1.39120 * 120.29223 * 0.50460 * 17 16 15 19 19 C 1.38349 * 119.79042 * 359.57433 * 18 17 16 20 20 C 1.38505 * 119.87577 * 0.26417 * 19 18 17 21 21 C 1.50779 * 121.41268 * 180.53650 * 19 18 17 22 22 C 1.53072 * 109.69449 * 342.10725 * 21 19 18 23 23 C 1.53409 * 108.30222 * 48.21409 * 22 21 19 24 24 O 1.35946 * 118.43376 * 179.48271 * 18 17 16 25 25 C 1.47025 * 125.64505 * 162.40951 * 9 7 2 26 26 H 0.97005 * 120.00322 * 175.27863 * 1 2 3 27 27 H 1.08993 * 110.36129 * 322.93509 * 10 9 7 28 28 H 1.09006 * 110.36155 * 85.14206 * 10 9 7 29 29 H 1.09001 * 111.00237 * 81.06348 * 11 10 9 30 30 H 1.08993 * 111.00450 * 204.91457 * 11 10 9 31 31 H 1.07999 * 120.05266 * 0.10061 * 16 15 14 32 32 H 1.08003 * 119.85048 * 180.23177 * 17 16 15 33 33 H 1.08003 * 119.86146 * 179.78870 * 20 19 18 34 34 H 1.08999 * 109.43139 * 102.17823 * 21 19 18 35 35 H 1.09002 * 109.43410 * 222.03651 * 21 19 18 36 36 H 1.08997 * 109.70349 * 288.50795 * 22 21 19 37 37 H 1.08999 * 109.72485 * 167.92650 * 22 21 19 38 38 H 1.08993 * 109.68539 * 175.56315 * 23 22 21 39 39 H 1.09000 * 109.71570 * 55.01825 * 23 22 21 40 40 H 1.08996 * 109.88594 * 298.39365 * 25 9 7 41 41 H 1.09004 * 109.88012 * 59.56397 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2021 -0.0058 8 1 2.9895 -1.2581 -0.4580 9 7 1.4533 -2.3170 0.5616 10 6 0.3237 -2.3260 1.5088 11 6 0.4785 -3.6499 2.2981 12 6 0.9872 -4.6135 1.1934 13 1 0.1540 -5.0046 0.6093 14 8 1.7470 -5.6806 1.7641 15 6 1.8450 -6.8260 1.0377 16 6 1.2649 -6.9031 -0.2201 17 6 1.3690 -8.0657 -0.9552 18 6 2.0446 -9.1658 -0.4366 19 6 2.6215 -9.0890 0.8185 20 6 2.5193 -7.9202 1.5545 21 6 3.3722 -10.2548 1.4109 22 6 3.0007 -11.5396 0.6664 23 6 3.1004 -11.2692 -0.8404 24 8 2.1151 -10.2958 -1.1891 25 6 1.8788 -3.7038 0.3220 26 1 -0.4851 -0.8372 -0.0691 27 1 0.3876 -1.4723 2.1834 28 1 -0.6236 -2.3124 0.9695 29 1 1.2148 -3.5458 3.0950 30 1 -0.4805 -3.9823 2.6953 31 1 0.7361 -6.0528 -0.6248 32 1 0.9204 -8.1236 -1.9359 33 1 2.9668 -7.8617 2.5357 34 1 4.4442 -10.0798 1.3198 35 1 3.1104 -10.3572 2.4641 36 1 1.9815 -11.8302 0.9209 37 1 3.6901 -12.3374 0.9428 38 1 2.9168 -12.1913 -1.3918 39 1 4.0933 -10.8891 -1.0808 40 1 1.7504 -3.9544 -0.7309 41 1 2.9231 -3.8261 0.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233588351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -49.185920 kcal Electronic energy + Delta-G solvation = -22674.856840 eV Core-core repulsion = 19326.879497 eV Total energy + Delta-G solvation = -3347.977344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83958 -40.70954 -38.78497 -37.18993 -35.21047 -34.50203 -31.59127 -31.33364 -30.49320 -29.12952 -26.60717 -26.39616 -24.57827 -23.73638 -22.38185 -22.13951 -20.69960 -19.68065 -19.04452 -18.64529 -17.69907 -16.83401 -16.59963 -16.40208 -15.86351 -15.48912 -15.43043 -15.29210 -15.14963 -14.93523 -14.40110 -14.14813 -14.07372 -13.99565 -13.84771 -13.42842 -12.73589 -12.70369 -12.61486 -12.49030 -12.42579 -11.95587 -11.91217 -11.87123 -11.67303 -11.64922 -11.39873 -11.15636 -10.56965 -9.89611 -9.10720 -8.74545 -8.41330 -5.41656 0.17499 0.39638 1.56292 1.64322 1.84017 2.05003 2.37742 2.60596 2.66501 3.11789 3.41971 3.51766 3.64034 3.73541 3.75599 3.81710 3.84080 3.93945 4.05944 4.15049 4.30593 4.37588 4.42965 4.50181 4.62632 4.67801 4.69547 4.72230 4.81655 4.89150 4.94593 4.95455 5.00226 5.03583 5.17558 5.18386 5.32699 5.36158 5.55752 5.60575 6.24993 6.31554 6.53556 6.81364 7.61989 8.18542 8.92097 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.003088 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.963986 B = 9063.861926 C = 9246.094055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.072 4.072 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.357 4.357 8 H 0.056 0.944 9 N -0.622 5.622 10 C 0.146 3.854 11 C -0.111 4.111 12 C 0.087 3.913 13 H 0.093 0.907 14 O -0.310 6.310 15 C 0.084 3.916 16 C -0.184 4.184 17 C -0.117 4.117 18 C 0.083 3.917 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.080 4.080 22 C -0.153 4.153 23 C 0.049 3.951 24 O -0.333 6.333 25 C 0.117 3.883 26 H 0.257 0.743 27 H 0.032 0.968 28 H 0.018 0.982 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -24.811 3.041 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.269 4.269 3 Si 0.942 3.058 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.485 4.485 8 H 0.074 0.926 9 N -0.351 5.351 10 C 0.021 3.979 11 C -0.149 4.149 12 C 0.031 3.969 13 H 0.111 0.889 14 O -0.224 6.224 15 C 0.040 3.960 16 C -0.203 4.203 17 C -0.135 4.135 18 C 0.038 3.962 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.117 4.117 22 C -0.191 4.191 23 C -0.025 4.025 24 O -0.248 6.248 25 C -0.008 4.008 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.154 -23.125 3.077 23.891 hybrid contribution -0.003 -1.185 -0.500 1.286 sum 5.150 -24.310 2.577 24.983 Atomic orbital electron populations 1.70919 1.07491 1.29497 1.50105 1.27243 0.96518 1.04444 0.98655 0.82823 0.73900 0.71724 0.77385 1.21270 1.20622 1.20008 1.19976 1.00127 0.89374 1.38991 0.92569 1.44703 1.38948 1.01237 1.50174 1.21503 0.90180 0.95595 0.90636 1.22826 1.02582 0.92777 0.96739 1.23270 0.92739 0.85281 0.95656 0.88947 1.86102 1.69946 1.21277 1.45033 1.19157 0.98310 0.87050 0.91527 1.21183 1.04494 0.99567 0.95008 1.20540 1.01681 0.90428 1.00878 1.18650 0.99722 0.87122 0.90718 1.19927 1.02102 0.96825 0.93350 1.20351 1.02023 0.90343 1.01766 1.20622 0.99840 0.90474 1.00727 1.22235 1.03974 0.98187 0.94665 1.23295 0.90968 0.91353 0.96912 1.85987 1.56588 1.27609 1.54628 1.21804 0.97081 0.85380 0.96552 0.93269 0.94936 0.96414 0.90132 0.87500 0.85129 0.84136 0.83676 0.88945 0.88466 0.90961 0.86741 0.85276 0.91422 0.96013 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.00 21.65 0.28 -57.81 16 2 C -0.07 -4.22 5.07 84.86 0.43 -3.79 16 3 Si 1.12 51.92 30.00 68.60 2.06 53.97 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.36 -21.07 10.01 84.03 0.84 -20.23 16 8 H 0.06 3.33 7.97 -2.91 -0.02 3.31 16 9 N -0.62 -33.26 3.28 -691.96 -2.27 -35.53 16 10 C 0.15 6.96 5.33 86.85 0.46 7.42 16 11 C -0.11 -4.04 6.81 31.99 0.22 -3.83 16 12 C 0.09 3.18 2.74 31.79 0.09 3.27 16 13 H 0.09 3.11 6.15 -2.38 -0.01 3.10 16 14 O -0.31 -10.67 9.88 -93.36 -0.92 -11.59 16 15 C 0.08 2.61 6.67 22.45 0.15 2.76 16 16 C -0.18 -5.51 8.94 22.32 0.20 -5.31 16 17 C -0.12 -3.17 9.93 22.41 0.22 -2.95 16 18 C 0.08 2.08 6.47 22.51 0.15 2.23 16 19 C -0.12 -2.74 5.75 -19.75 -0.11 -2.86 16 20 C -0.13 -3.27 9.60 22.40 0.22 -3.05 16 21 C -0.08 -1.13 5.86 29.90 0.18 -0.96 16 22 C -0.15 -1.65 6.19 30.76 0.19 -1.46 16 23 C 0.05 0.65 7.03 72.12 0.51 1.16 16 24 O -0.33 -7.42 10.27 -92.94 -0.95 -8.38 16 25 C 0.12 5.29 6.86 86.73 0.60 5.88 16 26 H 0.26 16.04 6.07 -92.70 -0.56 15.48 16 27 H 0.03 1.68 7.99 -2.39 -0.02 1.66 16 28 H 0.02 0.90 6.80 -2.38 -0.02 0.88 16 29 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.13 3.99 5.71 -2.91 -0.02 3.97 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 41 H 0.03 1.22 8.06 -2.38 -0.02 1.20 16 Total: -1.00 -71.51 328.97 3.74 -67.77 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.23 Total: 13.28 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.33 Total: -21.71 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.99 Total: -93.34 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.88 Total: -19.97 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.06 Total: 53.97 kcal Total: -71.51 3.74 -67.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233588351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.584 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds