Wall clock time and date at job start Tue Mar 31 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47258 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47103 * 120.00225 * 3 2 1 6 6 H 1.48505 * 109.46975 * 239.99952 * 3 2 1 7 7 C 1.38815 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64732 * 359.69488 * 9 7 2 11 11 C 1.55135 * 104.71901 * 155.81884 * 10 9 7 12 12 C 1.55158 * 101.48719 * 37.29177 * 11 10 9 13 13 H 1.09004 * 110.86940 * 82.77148 * 12 11 10 14 14 O 1.42903 * 110.71385 * 205.96883 * 12 11 10 15 15 C 1.35983 * 116.99353 * 198.49891 * 14 12 11 16 16 C 1.38723 * 120.07102 * 354.66174 * 15 14 12 17 17 C 1.37950 * 119.89983 * 180.08251 * 16 15 14 18 18 C 1.39127 * 120.29171 * 0.02562 * 17 16 15 19 19 C 1.38352 * 119.78490 * 359.82555 * 18 17 16 20 20 C 1.38497 * 119.88162 * 359.96229 * 19 18 17 21 21 C 1.50779 * 121.40731 * 180.30265 * 19 18 17 22 22 C 1.53060 * 109.68277 * 342.02065 * 21 19 18 23 23 C 1.53411 * 108.29355 * 48.28731 * 22 21 19 24 24 O 1.35947 * 118.43497 * 179.50389 * 18 17 16 25 25 C 1.47027 * 125.64735 * 180.02562 * 9 7 2 26 26 H 0.97000 * 119.99836 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36387 * 274.73932 * 10 9 7 28 28 H 1.08987 * 110.36794 * 37.06669 * 10 9 7 29 29 H 1.08997 * 111.18784 * 279.18331 * 11 10 9 30 30 H 1.09003 * 110.93760 * 155.28745 * 11 10 9 31 31 H 1.07990 * 120.05036 * 0.06404 * 16 15 14 32 32 H 1.07996 * 119.85165 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.85984 * 180.13240 * 20 19 18 34 34 H 1.09003 * 109.43204 * 102.08122 * 21 19 18 35 35 H 1.08997 * 109.43716 * 221.95016 * 21 19 18 36 36 H 1.09006 * 109.70213 * 167.98549 * 22 21 19 37 37 H 1.09002 * 109.70333 * 288.58412 * 22 21 19 38 38 H 1.08993 * 109.68416 * 55.02260 * 23 22 21 39 39 H 1.08999 * 109.68155 * 175.53566 * 23 22 21 40 40 H 1.08996 * 109.88005 * 300.43805 * 25 9 7 41 41 H 1.09001 * 109.88399 * 61.60403 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5331 0.0086 11 6 -0.4023 -3.9328 -0.6075 12 6 0.7783 -4.7524 -0.0229 13 1 0.5488 -5.0996 0.9845 14 8 1.0994 -5.8541 -0.8745 15 6 1.8264 -6.8652 -0.3282 16 6 2.3166 -6.7492 0.9643 17 6 3.0551 -7.7763 1.5144 18 6 3.3115 -8.9287 0.7783 19 6 2.8198 -9.0451 -0.5096 20 6 2.0747 -8.0153 -1.0595 21 6 3.0699 -10.2803 -1.3375 22 6 4.2384 -11.0709 -0.7439 23 6 4.0056 -11.2138 0.7657 24 8 4.0520 -9.9129 1.3537 25 6 1.9317 -3.7275 0.0028 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5223 -2.4884 1.0291 28 1 -0.6024 -1.7579 -0.6034 29 1 -0.3538 -3.8994 -1.6958 30 1 -1.3594 -4.3334 -0.2733 31 1 2.1205 -5.8561 1.5389 32 1 3.4360 -7.6853 2.5209 33 1 1.6892 -8.1074 -2.0642 34 1 2.1750 -10.9026 -1.3398 35 1 3.3111 -9.9890 -2.3598 36 1 4.2852 -12.0582 -1.2035 37 1 5.1718 -10.5371 -0.9229 38 1 3.0293 -11.6634 0.9457 39 1 4.7842 -11.8412 1.1994 40 1 2.5576 -3.8519 -0.8808 41 1 2.5287 -3.8635 0.9046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233588355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:21 Heat of formation + Delta-G solvation = -25.646519 kcal Electronic energy + Delta-G solvation = -22667.793008 eV Core-core repulsion = 19320.836410 eV Total energy + Delta-G solvation = -3346.956599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78196 -39.37471 -37.10498 -35.70924 -34.39770 -32.31805 -30.60322 -29.79558 -28.98785 -27.30185 -25.74712 -24.63117 -23.48410 -22.60733 -20.83289 -20.25429 -19.55405 -17.83913 -17.54749 -17.04228 -16.51352 -15.72230 -15.12645 -14.79241 -14.70319 -14.55787 -14.15414 -13.85827 -13.70836 -13.26757 -13.13722 -12.91802 -12.82420 -12.40236 -12.02496 -11.75144 -11.59140 -11.30488 -11.16880 -11.01057 -10.87349 -10.77016 -10.53524 -10.38248 -10.17561 -9.87067 -9.80975 -9.60621 -8.82839 -8.68790 -7.58789 -6.89076 -5.68718 -3.11177 1.27059 1.54142 3.21881 3.40199 3.43891 3.45216 3.54218 3.74992 4.43897 4.46628 4.47743 4.59230 4.78322 4.97322 5.02737 5.16463 5.25380 5.28799 5.33573 5.34674 5.43488 5.48077 5.58883 5.61759 5.68379 5.76749 5.82274 5.95837 6.02982 6.27242 6.37093 6.39375 6.43621 6.48946 6.61041 6.62416 6.76164 7.39049 7.42522 7.58423 7.74772 7.83083 8.31069 9.17816 9.78099 10.41449 11.35437 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.003136 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.172234 B = 8925.562567 C = 9260.536487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.134 4.134 12 C 0.070 3.930 13 H 0.075 0.925 14 O -0.305 6.305 15 C 0.115 3.885 16 C -0.173 4.173 17 C -0.105 4.105 18 C 0.083 3.917 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.077 4.077 22 C -0.160 4.160 23 C 0.062 3.938 24 O -0.319 6.319 25 C 0.117 3.883 26 H 0.254 0.746 27 H 0.016 0.984 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -22.144 -0.315 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.093 0.907 14 O -0.218 6.218 15 C 0.069 3.931 16 C -0.192 4.192 17 C -0.124 4.124 18 C 0.039 3.961 19 C -0.124 4.124 20 C -0.146 4.146 21 C -0.114 4.114 22 C -0.197 4.197 23 C -0.014 4.014 24 O -0.234 6.234 25 C -0.009 4.009 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.102 -21.869 -0.349 22.254 hybrid contribution 0.477 0.773 0.114 0.916 sum 4.579 -21.096 -0.235 21.589 Atomic orbital electron populations 1.69739 1.04925 1.25054 1.57505 1.24797 0.95762 0.97772 1.02231 0.86109 0.78392 0.82791 0.77956 1.21499 1.21148 1.21080 1.19047 0.90564 0.82258 1.43353 0.90413 1.44379 1.01907 0.99466 1.87084 1.22061 0.84847 0.91904 0.98456 1.23220 0.94820 0.97668 1.01585 1.23651 0.97412 0.84306 0.93247 0.90673 1.86166 1.67372 1.28191 1.40087 1.18907 0.93317 0.88811 0.92087 1.21256 1.01781 1.00535 0.95597 1.20367 0.99985 0.92035 1.00018 1.18485 0.96275 0.89928 0.91418 1.19499 1.01777 0.97386 0.93759 1.20095 1.02293 0.91429 1.00733 1.20459 0.98506 0.93557 0.98862 1.22233 0.99634 1.01572 0.96272 1.22893 1.02404 0.82854 0.93212 1.85996 1.64732 1.18134 1.54488 1.21753 0.93917 0.86486 0.98763 0.93542 0.96553 0.86788 0.90782 0.91532 0.84318 0.85119 0.85159 0.90388 0.89867 0.89898 0.90389 0.92097 0.87844 0.94676 0.95647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.08 55.49 0.56 -26.25 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.69 3.39 -169.93 -0.58 -16.27 16 10 C 0.15 3.69 5.91 -2.40 -0.01 3.68 16 11 C -0.13 -2.63 6.82 -24.46 -0.17 -2.80 16 12 C 0.07 1.31 2.77 -24.90 -0.07 1.25 16 13 H 0.08 1.30 6.59 -51.93 -0.34 0.96 16 14 O -0.30 -5.47 9.88 -19.69 -0.19 -5.67 16 15 C 0.11 1.83 6.62 -39.29 -0.26 1.57 16 16 C -0.17 -2.62 8.77 -39.51 -0.35 -2.96 16 17 C -0.11 -1.46 9.93 -39.36 -0.39 -1.85 16 18 C 0.08 1.12 6.47 -39.21 -0.25 0.86 16 19 C -0.12 -1.54 5.75 -104.45 -0.60 -2.14 16 20 C -0.13 -1.76 9.60 -39.38 -0.38 -2.14 16 21 C -0.08 -0.69 5.86 -27.81 -0.16 -0.85 16 22 C -0.16 -1.19 6.19 -26.49 -0.16 -1.35 16 23 C 0.06 0.50 7.03 37.37 0.26 0.77 16 24 O -0.32 -3.89 10.27 -19.57 -0.20 -4.09 16 25 C 0.12 2.56 6.51 -3.06 -0.02 2.54 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.11 3.09 5.85 -51.94 -0.30 2.79 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.14 2.10 5.32 -52.49 -0.28 1.82 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 41 H 0.03 0.54 7.43 -51.93 -0.39 0.16 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -31.04 327.27 -9.24 -40.28 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.93 Total: 0.25 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.81 Total: -10.29 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.02 Total: -42.52 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.40 Total: -9.76 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.04 -9.24 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233588355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.638 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds