Wall clock time and date at job start Tue Mar 31 2020 06:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47258 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47103 * 120.00225 * 3 2 1 6 6 H 1.48505 * 109.46975 * 239.99952 * 3 2 1 7 7 C 1.38815 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64732 * 359.69488 * 9 7 2 11 11 C 1.55135 * 104.71901 * 155.81884 * 10 9 7 12 12 C 1.55158 * 101.48719 * 37.29177 * 11 10 9 13 13 H 1.09004 * 110.86940 * 82.77148 * 12 11 10 14 14 O 1.42903 * 110.71385 * 205.96883 * 12 11 10 15 15 C 1.35983 * 116.99353 * 198.49891 * 14 12 11 16 16 C 1.38723 * 120.07102 * 354.66174 * 15 14 12 17 17 C 1.37950 * 119.89983 * 180.08251 * 16 15 14 18 18 C 1.39127 * 120.29171 * 0.02562 * 17 16 15 19 19 C 1.38352 * 119.78490 * 359.82555 * 18 17 16 20 20 C 1.38497 * 119.88162 * 359.96229 * 19 18 17 21 21 C 1.50779 * 121.40731 * 180.30265 * 19 18 17 22 22 C 1.53060 * 109.68277 * 342.02065 * 21 19 18 23 23 C 1.53411 * 108.29355 * 48.28731 * 22 21 19 24 24 O 1.35947 * 118.43497 * 179.50389 * 18 17 16 25 25 C 1.47027 * 125.64735 * 180.02562 * 9 7 2 26 26 H 0.97000 * 119.99836 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36387 * 274.73932 * 10 9 7 28 28 H 1.08987 * 110.36794 * 37.06669 * 10 9 7 29 29 H 1.08997 * 111.18784 * 279.18331 * 11 10 9 30 30 H 1.09003 * 110.93760 * 155.28745 * 11 10 9 31 31 H 1.07990 * 120.05036 * 0.06404 * 16 15 14 32 32 H 1.07996 * 119.85165 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.85984 * 180.13240 * 20 19 18 34 34 H 1.09003 * 109.43204 * 102.08122 * 21 19 18 35 35 H 1.08997 * 109.43716 * 221.95016 * 21 19 18 36 36 H 1.09006 * 109.70213 * 167.98549 * 22 21 19 37 37 H 1.09002 * 109.70333 * 288.58412 * 22 21 19 38 38 H 1.08993 * 109.68416 * 55.02260 * 23 22 21 39 39 H 1.08999 * 109.68155 * 175.53566 * 23 22 21 40 40 H 1.08996 * 109.88005 * 300.43805 * 25 9 7 41 41 H 1.09001 * 109.88399 * 61.60403 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5331 0.0086 11 6 -0.4023 -3.9328 -0.6075 12 6 0.7783 -4.7524 -0.0229 13 1 0.5488 -5.0996 0.9845 14 8 1.0994 -5.8541 -0.8745 15 6 1.8264 -6.8652 -0.3282 16 6 2.3166 -6.7492 0.9643 17 6 3.0551 -7.7763 1.5144 18 6 3.3115 -8.9287 0.7783 19 6 2.8198 -9.0451 -0.5096 20 6 2.0747 -8.0153 -1.0595 21 6 3.0699 -10.2803 -1.3375 22 6 4.2384 -11.0709 -0.7439 23 6 4.0056 -11.2138 0.7657 24 8 4.0520 -9.9129 1.3537 25 6 1.9317 -3.7275 0.0028 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5223 -2.4884 1.0291 28 1 -0.6024 -1.7579 -0.6034 29 1 -0.3538 -3.8994 -1.6958 30 1 -1.3594 -4.3334 -0.2733 31 1 2.1205 -5.8561 1.5389 32 1 3.4360 -7.6853 2.5209 33 1 1.6892 -8.1074 -2.0642 34 1 2.1750 -10.9026 -1.3398 35 1 3.3111 -9.9890 -2.3598 36 1 4.2852 -12.0582 -1.2035 37 1 5.1718 -10.5371 -0.9229 38 1 3.0293 -11.6634 0.9457 39 1 4.7842 -11.8412 1.1994 40 1 2.5576 -3.8519 -0.8808 41 1 2.5287 -3.8635 0.9046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233588355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:20 Heat of formation + Delta-G solvation = -43.304922 kcal Electronic energy + Delta-G solvation = -22668.558734 eV Core-core repulsion = 19320.836410 eV Total energy + Delta-G solvation = -3347.722324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78853 -40.62025 -38.56940 -37.07359 -35.18078 -34.29661 -31.55515 -31.38812 -30.38267 -29.00267 -26.59509 -26.50656 -24.49546 -23.67838 -22.25774 -22.04669 -20.65164 -19.11320 -18.88938 -18.55286 -17.56893 -17.00973 -16.69000 -16.16461 -16.08423 -15.56837 -15.30119 -15.22518 -14.88834 -14.44342 -14.37151 -14.03951 -13.99386 -13.80981 -13.65446 -13.34671 -12.98317 -12.78706 -12.66505 -12.41019 -12.14619 -12.07647 -11.91847 -11.80322 -11.76555 -11.50284 -11.33281 -11.10773 -10.78437 -9.85114 -8.97142 -8.69196 -7.81596 -5.27595 0.22175 0.44439 1.46185 1.49629 1.56124 2.14671 2.42637 2.49236 2.69266 3.28896 3.59241 3.63774 3.69565 3.79362 3.84051 3.92784 3.95236 4.01560 4.11303 4.19555 4.40963 4.51768 4.55435 4.61884 4.66978 4.72279 4.77957 4.84831 4.93038 4.95499 4.97948 5.06179 5.09788 5.20249 5.37458 5.39809 5.41477 5.54524 5.62018 5.73160 6.24895 6.38822 6.58602 7.05564 7.70452 8.33559 9.20291 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.003136 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.172234 B = 8925.562567 C = 9260.536487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.984 3.016 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.623 5.623 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.088 3.912 13 H 0.092 0.908 14 O -0.313 6.313 15 C 0.085 3.915 16 C -0.182 4.182 17 C -0.117 4.117 18 C 0.082 3.918 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.079 4.079 22 C -0.155 4.155 23 C 0.050 3.950 24 O -0.333 6.333 25 C 0.117 3.883 26 H 0.251 0.749 27 H 0.001 0.999 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.023 0.977 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 -24.549 -0.619 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.811 3.189 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.351 5.351 10 C 0.029 3.971 11 C -0.159 4.159 12 C 0.031 3.969 13 H 0.109 0.891 14 O -0.227 6.227 15 C 0.040 3.960 16 C -0.200 4.200 17 C -0.135 4.135 18 C 0.037 3.963 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.192 4.192 23 C -0.024 4.024 24 O -0.249 6.249 25 C -0.009 4.009 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.041 0.959 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.952 -24.320 -0.654 24.827 hybrid contribution 0.302 1.352 0.224 1.403 sum 5.254 -22.967 -0.430 23.565 Atomic orbital electron populations 1.69982 1.06154 1.25454 1.58030 1.25655 0.96731 1.00976 1.02134 0.85078 0.77157 0.78429 0.78195 1.21514 1.20353 1.20346 1.19402 0.91010 0.83617 1.43550 0.90370 1.44669 1.02865 1.00432 1.87105 1.21849 0.83985 0.93950 0.97275 1.23030 0.96774 0.95036 1.01060 1.23332 0.95341 0.84055 0.94173 0.89056 1.86119 1.68246 1.28306 1.40067 1.19172 0.94678 0.89179 0.92974 1.21222 1.02512 1.00814 0.95491 1.20542 1.00016 0.92214 1.00743 1.18649 0.95778 0.90121 0.91737 1.19912 1.00345 0.98294 0.93766 1.20349 1.02145 0.90979 1.01189 1.20611 0.99978 0.92297 0.98731 1.22242 0.98383 1.02871 0.95707 1.23281 1.04007 0.81187 0.93929 1.85983 1.64267 1.19418 1.55186 1.21838 0.95042 0.85771 0.98234 0.93966 0.98084 0.89846 0.91140 0.88359 0.84968 0.84068 0.83862 0.88635 0.88837 0.86727 0.91315 0.91108 0.85382 0.95884 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.37 10.08 21.65 0.22 -56.16 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.25 -14.26 10.27 84.03 0.86 -13.40 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -33.37 3.39 -691.54 -2.35 -35.71 16 10 C 0.15 7.69 5.91 86.93 0.51 8.20 16 11 C -0.12 -4.69 6.82 32.07 0.22 -4.47 16 12 C 0.09 3.27 2.77 31.78 0.09 3.36 16 13 H 0.09 3.11 6.59 -2.38 -0.02 3.10 16 14 O -0.31 -11.11 9.88 -93.36 -0.92 -12.04 16 15 C 0.08 2.67 6.62 22.46 0.15 2.82 16 16 C -0.18 -5.47 8.77 22.32 0.20 -5.27 16 17 C -0.12 -3.17 9.93 22.42 0.22 -2.95 16 18 C 0.08 2.08 6.47 22.51 0.15 2.22 16 19 C -0.12 -2.82 5.75 -19.75 -0.11 -2.93 16 20 C -0.13 -3.39 9.60 22.40 0.22 -3.17 16 21 C -0.08 -1.16 5.86 29.89 0.18 -0.98 16 22 C -0.15 -1.75 6.19 30.75 0.19 -1.56 16 23 C 0.05 0.66 7.03 72.12 0.51 1.17 16 24 O -0.33 -7.46 10.27 -92.96 -0.95 -8.42 16 25 C 0.12 5.21 6.51 86.73 0.56 5.77 16 26 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.08 4.69 5.85 -2.39 -0.01 4.68 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 30 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.13 4.04 5.32 -2.92 -0.02 4.02 16 32 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 41 H 0.03 1.31 7.43 -2.39 -0.02 1.29 16 Total: -1.00 -68.11 327.27 3.45 -64.66 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.02 Total: 13.95 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.40 Total: -14.29 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -2.13 Total: -91.87 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.88 Total: -20.45 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -68.11 3.45 -64.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233588355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.358 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds