Wall clock time and date at job start Tue Mar 31 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48503 * 109.47329 * 89.99453 * 3 2 1 5 5 H 1.48497 * 109.47273 * 209.99549 * 3 2 1 6 6 H 1.48497 * 109.46638 * 329.99829 * 3 2 1 7 7 C 1.37884 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99707 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99825 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.47478 * 110.99881 * 265.96709 * 10 9 7 12 12 C 1.53509 * 87.93280 * 221.29860 * 11 10 9 13 13 O 1.42898 * 114.17162 * 272.37601 * 12 11 10 14 14 C 1.35983 * 117.00403 * 250.60215 * 13 12 11 15 15 C 1.38715 * 120.07293 * 185.45558 * 14 13 12 16 16 C 1.37942 * 119.90236 * 179.84634 * 15 14 13 17 17 C 1.39130 * 120.29104 * 0.51818 * 16 15 14 18 18 C 1.38350 * 119.78405 * 359.61486 * 17 16 15 19 19 C 1.38500 * 119.88056 * 0.16338 * 18 17 16 20 20 C 1.50782 * 121.40937 * 180.32389 * 18 17 16 21 21 C 1.53068 * 109.68949 * 342.17822 * 20 18 17 22 22 C 1.53402 * 108.30063 * 48.22150 * 21 20 18 23 23 O 1.35957 * 118.43308 * 179.46410 * 17 16 15 24 24 C 1.47483 * 110.99707 * 169.99971 * 10 9 7 25 25 H 0.96997 * 120.00356 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46869 * 300.00019 * 9 7 2 27 27 H 1.08994 * 109.47260 * 59.99592 * 9 7 2 28 28 H 1.09008 * 113.47622 * 336.06670 * 11 10 9 29 29 H 1.08997 * 113.47542 * 106.53253 * 11 10 9 30 30 H 1.09003 * 114.34688 * 139.68308 * 12 11 10 31 31 H 1.08003 * 120.04771 * 0.07883 * 15 14 13 32 32 H 1.07998 * 119.85812 * 180.26911 * 16 15 14 33 33 H 1.07997 * 119.85724 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.43053 * 102.24056 * 20 18 17 35 35 H 1.08996 * 109.43450 * 222.15492 * 20 18 17 36 36 H 1.09005 * 109.69671 * 167.92464 * 21 20 18 37 37 H 1.09001 * 109.69549 * 288.51812 * 21 20 18 38 38 H 1.08998 * 109.68733 * 54.98379 * 22 21 20 39 39 H 1.08999 * 109.68485 * 175.50844 * 22 21 20 40 40 H 1.09004 * 113.47267 * 253.46404 * 24 10 9 41 41 H 1.09000 * 113.47818 * 23.93332 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6525 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 4.2680 -3.0454 1.3744 12 6 5.5417 -3.7153 0.8400 13 8 5.3425 -5.0419 0.3476 14 6 5.8641 -6.0588 1.0846 15 6 5.8077 -7.3611 0.6102 16 6 6.3407 -8.3895 1.3592 17 6 6.9256 -8.1282 2.5942 18 6 6.9791 -6.8295 3.0682 19 6 6.4478 -5.7970 2.3133 20 6 7.6108 -6.5038 4.3980 21 6 7.7259 -7.7770 5.2399 22 6 8.3398 -8.8783 4.3662 23 8 7.4292 -9.1715 3.3057 24 6 5.4558 -2.6254 -0.2376 25 1 -0.4850 0.8400 -0.0004 26 1 3.8751 -0.6804 -0.8889 27 1 3.8745 -0.6800 0.8910 28 1 4.4653 -2.2358 2.0772 29 1 3.5270 -3.7541 1.7440 30 1 6.4064 -3.6256 1.4976 31 1 5.3504 -7.5690 -0.3460 32 1 6.3002 -9.4026 0.9871 33 1 6.4894 -4.7834 2.6839 34 1 8.6041 -6.0858 4.2350 35 1 6.9931 -5.7763 4.9245 36 1 8.3675 -7.5910 6.1014 37 1 6.7364 -8.0848 5.5777 38 1 9.2870 -8.5331 3.9518 39 1 8.5059 -9.7731 4.9661 40 1 5.7213 -2.9782 -1.2341 41 1 5.9701 -1.7038 0.0350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233589854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:48 Heat of formation + Delta-G solvation = -4.467198 kcal Electronic energy + Delta-G solvation = -22351.617622 eV Core-core repulsion = 19005.579428 eV Total energy + Delta-G solvation = -3346.038194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96145 -40.04459 -38.21567 -36.01699 -34.51545 -32.78723 -30.83772 -29.96772 -29.27221 -26.16729 -25.62545 -25.35721 -23.73279 -22.93282 -21.20334 -20.46880 -19.43660 -17.96222 -17.63544 -16.80451 -16.72919 -15.80501 -15.45140 -15.03738 -14.78457 -14.65283 -14.40289 -14.19669 -13.92854 -13.46700 -13.33821 -13.26345 -13.01118 -12.71995 -12.43839 -12.29258 -12.04956 -11.52229 -11.44372 -11.20848 -11.05279 -10.88322 -10.59231 -10.44742 -10.06533 -9.93734 -9.77806 -9.37088 -8.96252 -8.59652 -8.01674 -7.70871 -6.06051 -4.03678 1.15365 1.40425 3.09771 3.24388 3.26957 3.32716 3.33456 3.62027 4.31194 4.39166 4.39742 4.46333 4.60985 4.63141 4.67231 4.85028 4.94390 5.09717 5.15203 5.23420 5.23801 5.27416 5.36630 5.41763 5.53912 5.66718 5.70264 5.72096 5.82895 5.87897 5.99414 6.06573 6.20532 6.26450 6.29679 6.43004 6.55021 6.64697 7.27744 7.28284 7.58618 7.66686 7.80391 8.61886 9.05631 9.54577 11.07442 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.002973 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.810625 B = 9415.143029 C = 9696.413111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.443 5.443 11 C -0.007 4.007 12 C 0.047 3.953 13 O -0.274 6.274 14 C 0.111 3.889 15 C -0.120 4.120 16 C -0.107 4.107 17 C 0.085 3.915 18 C -0.120 4.120 19 C -0.178 4.178 20 C -0.080 4.080 21 C -0.160 4.160 22 C 0.062 3.938 23 O -0.318 6.318 24 C -0.004 4.004 25 H 0.264 0.736 26 H 0.029 0.971 27 H -0.004 1.004 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.101 -15.197 9.308 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.135 4.135 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.099 0.901 9 C -0.002 4.002 10 N -0.166 5.166 11 C -0.136 4.136 12 C -0.010 4.010 13 O -0.187 6.187 14 C 0.066 3.934 15 C -0.139 4.139 16 C -0.126 4.126 17 C 0.041 3.959 18 C -0.121 4.121 19 C -0.197 4.197 20 C -0.117 4.117 21 C -0.197 4.197 22 C -0.013 4.013 23 O -0.233 6.233 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.014 0.986 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.292 -15.591 8.645 26.268 hybrid contribution 0.934 1.950 0.852 2.324 sum 20.227 -13.641 9.497 26.180 Atomic orbital electron populations 1.69894 1.06119 1.26821 1.51003 1.24936 0.94772 0.98822 0.94925 0.86860 0.80343 0.84107 0.78425 1.20318 1.19262 1.21019 1.20961 0.88481 0.94861 1.50151 0.90117 1.20772 0.98312 0.85503 0.95624 1.69052 1.09795 1.23178 1.14550 1.24278 0.96077 0.99264 0.94030 1.23631 0.98482 0.80935 0.97986 1.86214 1.72021 1.13104 1.47378 1.18959 0.94773 0.88857 0.90835 1.20248 1.02986 0.89265 1.01384 1.20363 1.00684 0.99681 0.91871 1.18514 0.99169 0.86249 0.91999 1.19548 1.03016 0.92266 0.97252 1.21028 1.03869 0.99645 0.95169 1.20496 1.01024 0.97981 0.92195 1.22234 1.02871 0.95794 0.98835 1.22901 0.91299 0.99582 0.87563 1.85997 1.59835 1.31469 1.46006 1.24065 0.93821 0.95579 0.99877 0.92629 0.95304 0.98635 0.90647 0.89489 0.89674 0.84365 0.84677 0.84968 0.90396 0.89836 0.89843 0.90331 0.92074 0.87756 0.89359 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.82 9.94 -34.44 -0.34 -15.17 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.13 3.05 3.64 -4.98 -0.02 3.03 16 10 N -0.44 -9.58 6.32 -246.13 -1.55 -11.13 16 11 C -0.01 -0.13 7.55 -7.55 -0.06 -0.18 16 12 C 0.05 0.71 4.07 -26.20 -0.11 0.60 16 13 O -0.27 -4.51 10.19 -19.69 -0.20 -4.71 16 14 C 0.11 1.59 6.67 -39.30 -0.26 1.32 16 15 C -0.12 -1.54 9.98 -39.51 -0.39 -1.94 16 16 C -0.11 -1.27 9.93 -39.36 -0.39 -1.66 16 17 C 0.08 1.02 6.47 -39.21 -0.25 0.77 16 18 C -0.12 -1.38 5.75 -104.44 -0.60 -1.98 16 19 C -0.18 -2.24 8.66 -39.38 -0.34 -2.58 16 20 C -0.08 -0.67 5.86 -27.81 -0.16 -0.84 16 21 C -0.16 -1.11 6.19 -26.49 -0.16 -1.27 16 22 C 0.06 0.46 7.03 37.37 0.26 0.72 16 23 O -0.32 -3.51 10.27 -19.61 -0.20 -3.71 16 24 C 0.00 -0.07 7.52 -7.55 -0.06 -0.12 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 27 H 0.00 -0.09 6.73 -51.93 -0.35 -0.44 16 28 H 0.08 1.27 7.42 -51.92 -0.39 0.89 16 29 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.09 1.04 5.90 -51.93 -0.31 0.73 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.13 1.49 5.87 -52.49 -0.31 1.18 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.13 7.91 -51.93 -0.41 0.72 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -33.37 332.27 -9.78 -43.15 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.95 Total: -0.76 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.99 Total: -17.41 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.78 Total: -38.36 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.40 Total: -8.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.37 -9.78 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233589854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.678 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds