Wall clock time and date at job start Tue Mar 31 2020 06:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48503 * 109.47329 * 89.99453 * 3 2 1 5 5 H 1.48497 * 109.47273 * 209.99549 * 3 2 1 6 6 H 1.48497 * 109.46638 * 329.99829 * 3 2 1 7 7 C 1.37884 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99707 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99825 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.47478 * 110.99881 * 265.96709 * 10 9 7 12 12 C 1.53509 * 87.93280 * 221.29860 * 11 10 9 13 13 O 1.42898 * 114.17162 * 272.37601 * 12 11 10 14 14 C 1.35983 * 117.00403 * 250.60215 * 13 12 11 15 15 C 1.38715 * 120.07293 * 185.45558 * 14 13 12 16 16 C 1.37942 * 119.90236 * 179.84634 * 15 14 13 17 17 C 1.39130 * 120.29104 * 0.51818 * 16 15 14 18 18 C 1.38350 * 119.78405 * 359.61486 * 17 16 15 19 19 C 1.38500 * 119.88056 * 0.16338 * 18 17 16 20 20 C 1.50782 * 121.40937 * 180.32389 * 18 17 16 21 21 C 1.53068 * 109.68949 * 342.17822 * 20 18 17 22 22 C 1.53402 * 108.30063 * 48.22150 * 21 20 18 23 23 O 1.35957 * 118.43308 * 179.46410 * 17 16 15 24 24 C 1.47483 * 110.99707 * 169.99971 * 10 9 7 25 25 H 0.96997 * 120.00356 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46869 * 300.00019 * 9 7 2 27 27 H 1.08994 * 109.47260 * 59.99592 * 9 7 2 28 28 H 1.09008 * 113.47622 * 336.06670 * 11 10 9 29 29 H 1.08997 * 113.47542 * 106.53253 * 11 10 9 30 30 H 1.09003 * 114.34688 * 139.68308 * 12 11 10 31 31 H 1.08003 * 120.04771 * 0.07883 * 15 14 13 32 32 H 1.07998 * 119.85812 * 180.26911 * 16 15 14 33 33 H 1.07997 * 119.85724 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.43053 * 102.24056 * 20 18 17 35 35 H 1.08996 * 109.43450 * 222.15492 * 20 18 17 36 36 H 1.09005 * 109.69671 * 167.92464 * 21 20 18 37 37 H 1.09001 * 109.69549 * 288.51812 * 21 20 18 38 38 H 1.08998 * 109.68733 * 54.98379 * 22 21 20 39 39 H 1.08999 * 109.68485 * 175.50844 * 22 21 20 40 40 H 1.09004 * 113.47267 * 253.46404 * 24 10 9 41 41 H 1.09000 * 113.47818 * 23.93332 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6525 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 4.2680 -3.0454 1.3744 12 6 5.5417 -3.7153 0.8400 13 8 5.3425 -5.0419 0.3476 14 6 5.8641 -6.0588 1.0846 15 6 5.8077 -7.3611 0.6102 16 6 6.3407 -8.3895 1.3592 17 6 6.9256 -8.1282 2.5942 18 6 6.9791 -6.8295 3.0682 19 6 6.4478 -5.7970 2.3133 20 6 7.6108 -6.5038 4.3980 21 6 7.7259 -7.7770 5.2399 22 6 8.3398 -8.8783 4.3662 23 8 7.4292 -9.1715 3.3057 24 6 5.4558 -2.6254 -0.2376 25 1 -0.4850 0.8400 -0.0004 26 1 3.8751 -0.6804 -0.8889 27 1 3.8745 -0.6800 0.8910 28 1 4.4653 -2.2358 2.0772 29 1 3.5270 -3.7541 1.7440 30 1 6.4064 -3.6256 1.4976 31 1 5.3504 -7.5690 -0.3460 32 1 6.3002 -9.4026 0.9871 33 1 6.4894 -4.7834 2.6839 34 1 8.6041 -6.0858 4.2350 35 1 6.9931 -5.7763 4.9245 36 1 8.3675 -7.5910 6.1014 37 1 6.7364 -8.0848 5.5777 38 1 9.2870 -8.5331 3.9518 39 1 8.5059 -9.7731 4.9661 40 1 5.7213 -2.9782 -1.2341 41 1 5.9701 -1.7038 0.0350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233589854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:47 Heat of formation + Delta-G solvation = -28.373392 kcal Electronic energy + Delta-G solvation = -22352.654272 eV Core-core repulsion = 19005.579428 eV Total energy + Delta-G solvation = -3347.074845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93455 -41.18262 -39.34697 -37.06768 -35.22531 -34.93478 -31.94926 -31.38593 -30.31033 -27.62343 -26.91190 -26.45807 -24.50352 -24.12419 -22.90829 -21.37475 -20.55319 -18.99981 -18.87894 -18.55013 -17.69564 -17.06266 -16.56161 -16.32814 -16.14225 -15.63535 -15.41552 -15.23687 -15.14897 -14.78021 -14.56341 -14.29470 -14.17655 -13.95689 -13.71995 -13.59315 -13.15526 -12.98665 -12.71987 -12.39700 -12.14116 -11.88701 -11.78661 -11.71263 -11.58475 -11.52655 -11.29374 -11.03072 -10.81597 -9.85468 -9.59899 -8.67388 -8.31127 -6.36423 0.24375 0.44716 1.32627 1.36518 1.47260 2.09417 2.32718 2.43460 2.69443 3.00970 3.26125 3.32202 3.62046 3.68587 3.78175 3.88319 3.98093 4.11932 4.28144 4.29866 4.37989 4.41113 4.52413 4.54495 4.57682 4.62537 4.65980 4.71964 4.75020 4.85195 4.88453 4.94398 5.07603 5.11049 5.19323 5.35010 5.40500 5.46030 5.63090 5.69737 5.95366 6.42106 6.54580 6.60656 6.69909 7.27045 8.86610 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.002973 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.810625 B = 9415.143029 C = 9696.413111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.244 1.244 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.023 0.977 9 C 0.137 3.863 10 N -0.489 5.489 11 C -0.012 4.012 12 C 0.068 3.932 13 O -0.301 6.301 14 C 0.084 3.916 15 C -0.132 4.132 16 C -0.114 4.114 17 C 0.079 3.921 18 C -0.124 4.124 19 C -0.180 4.180 20 C -0.083 4.083 21 C -0.156 4.156 22 C 0.052 3.948 23 O -0.333 6.333 24 C -0.001 4.001 25 H 0.268 0.732 26 H 0.031 0.969 27 H 0.013 0.987 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.641 -14.430 10.898 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.168 1.168 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.042 0.958 9 C 0.009 3.991 10 N -0.212 5.212 11 C -0.142 4.142 12 C 0.011 3.989 13 O -0.215 6.215 14 C 0.039 3.961 15 C -0.150 4.150 16 C -0.132 4.132 17 C 0.035 3.965 18 C -0.125 4.125 19 C -0.198 4.198 20 C -0.119 4.119 21 C -0.193 4.193 22 C -0.022 4.022 23 O -0.248 6.248 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 22.859 -14.862 10.244 29.126 hybrid contribution -0.202 1.498 0.406 1.565 sum 22.657 -13.364 10.649 28.379 Atomic orbital electron populations 1.70077 1.08463 1.28321 1.52382 1.26025 0.95736 1.03662 0.94047 0.85570 0.79407 0.77622 0.79455 1.18593 1.16774 1.20746 1.21234 0.91504 0.92949 1.50432 0.95831 1.20538 0.94729 0.87727 0.96122 1.68939 1.13627 1.21454 1.17137 1.24355 0.97264 0.99661 0.92903 1.23490 0.97881 0.80287 0.97274 1.86170 1.72997 1.13884 1.48433 1.19203 0.96327 0.88698 0.91859 1.20395 1.03402 0.89365 1.01861 1.20575 1.00392 1.00143 0.92086 1.18719 0.98846 0.86886 0.92095 1.19922 1.02418 0.91768 0.98428 1.21191 1.03460 1.00654 0.94543 1.20620 1.01661 0.98961 0.90685 1.22239 1.02901 0.94793 0.99390 1.23250 0.90928 1.01090 0.86980 1.85982 1.60472 1.31452 1.46865 1.24163 0.90670 0.97360 1.00749 0.92325 0.95099 0.96963 0.88954 0.91894 0.85737 0.84198 0.83166 0.83644 0.88709 0.89248 0.86986 0.91440 0.91094 0.85422 0.89218 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.52 -31.69 9.94 25.60 0.25 -31.44 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 9 C 0.14 6.59 3.64 85.56 0.31 6.90 16 10 N -0.49 -21.16 6.32 -933.00 -5.89 -27.06 16 11 C -0.01 -0.45 7.55 83.57 0.63 0.18 16 12 C 0.07 1.95 4.07 30.94 0.13 2.07 16 13 O -0.30 -9.88 10.19 -93.36 -0.95 -10.83 16 14 C 0.08 2.37 6.67 22.45 0.15 2.52 16 15 C -0.13 -3.42 9.98 22.31 0.22 -3.20 16 16 C -0.11 -2.63 9.93 22.41 0.22 -2.41 16 17 C 0.08 1.81 6.47 22.51 0.15 1.96 16 18 C -0.12 -2.64 5.75 -19.75 -0.11 -2.75 16 19 C -0.18 -4.25 8.66 22.40 0.19 -4.06 16 20 C -0.08 -1.15 5.86 29.90 0.18 -0.97 16 21 C -0.16 -1.70 6.19 30.75 0.19 -1.51 16 22 C 0.05 0.62 7.03 72.12 0.51 1.13 16 23 O -0.33 -6.77 10.27 -93.07 -0.96 -7.72 16 24 C 0.00 -0.02 7.52 83.57 0.63 0.61 16 25 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.03 1.46 7.14 -2.39 -0.02 1.45 16 27 H 0.01 0.56 6.73 -2.39 -0.02 0.55 16 28 H 0.09 2.96 7.42 -2.38 -0.02 2.95 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.13 2.61 5.90 -2.39 -0.01 2.60 16 31 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.15 2.90 5.87 -2.91 -0.02 2.88 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.10 2.71 7.91 -2.39 -0.02 2.69 16 Total: -1.00 -76.24 332.27 -0.54 -76.78 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.97 Total: 14.47 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.11 Total: -30.38 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -5.59 Total: -88.01 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -1.91 Total: -18.55 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -76.24 -0.54 -76.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233589854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.403 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds