Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 C 1.52997 * 109.47386 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99997 * 265.79539 * 5 4 3 7 7 H 1.08004 * 120.00324 * 140.62292 * 6 5 4 8 8 C 1.38816 * 120.00035 * 320.61883 * 6 5 4 9 9 N 1.31615 * 119.99687 * 157.37465 * 8 6 5 10 10 Si 1.86792 * 119.99740 * 337.37603 * 8 6 5 11 11 H 1.48506 * 109.47195 * 94.99675 * 10 8 6 12 12 H 1.48497 * 109.47178 * 214.99516 * 10 8 6 13 13 H 1.48502 * 109.47352 * 334.99761 * 10 8 6 14 14 C 1.46500 * 120.00121 * 85.78981 * 5 4 3 15 15 C 1.50697 * 109.47041 * 87.11433 * 14 5 4 16 16 C 1.36131 * 119.77106 * 258.08929 * 15 14 5 17 17 C 1.38813 * 120.59210 * 180.25418 * 16 15 14 18 18 C 1.37501 * 120.18781 * 0.04400 * 17 16 15 19 19 C 1.39813 * 120.17817 * 359.95951 * 18 17 16 20 20 S 1.75897 * 130.56904 * 180.02562 * 19 18 17 21 21 C 1.75298 * 92.19912 * 179.97438 * 20 19 18 22 22 C 1.31825 * 111.40784 * 0.02562 * 21 20 19 23 23 C 1.39777 * 119.75634 * 0.02562 * 19 18 17 24 24 H 1.08996 * 109.47406 * 60.00172 * 1 2 3 25 25 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47017 * 299.99674 * 1 2 3 27 27 H 1.08996 * 109.47372 * 239.99657 * 2 1 3 28 28 H 1.09004 * 109.47061 * 119.99774 * 2 1 3 29 29 H 1.09002 * 109.46990 * 59.99790 * 3 2 1 30 30 H 1.08996 * 109.46938 * 300.00114 * 3 2 1 31 31 H 1.08996 * 109.47054 * 59.99570 * 4 3 2 32 32 H 1.09004 * 109.46918 * 299.99968 * 4 3 2 33 33 H 0.97001 * 119.99165 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47170 * 327.11113 * 14 5 4 35 35 H 1.09008 * 109.47371 * 207.11266 * 14 5 4 36 36 H 1.08005 * 119.70607 * 0.25193 * 16 15 14 37 37 H 1.07998 * 119.90303 * 180.02562 * 17 16 15 38 38 H 1.07999 * 119.91389 * 179.97438 * 18 17 16 39 39 H 1.08004 * 124.29896 * 179.97438 * 21 20 19 40 40 H 1.07995 * 122.55291 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.3689 3.4407 -1.1811 7 1 4.1171 4.4803 -1.3304 8 6 5.0077 2.7299 -2.1880 9 7 4.9172 3.1335 -3.4375 10 14 5.9954 1.2007 -1.7694 11 1 5.1436 -0.0027 -1.9470 12 1 7.1733 1.1106 -2.6692 13 1 6.4544 1.2785 -0.3593 14 6 4.2140 3.5451 1.2668 15 6 5.5785 3.2632 1.8410 16 6 5.7117 2.3707 2.8602 17 6 6.9597 2.1020 3.4054 18 6 8.0779 2.7381 2.9197 19 6 7.9641 3.6585 1.8734 20 16 9.1912 4.6146 1.0525 21 6 8.0044 5.3534 -0.0052 22 6 6.7898 4.9088 0.2497 23 6 6.7087 3.9307 1.3224 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9287 -0.8890 32 1 3.9329 0.9290 0.8909 33 1 5.3633 2.6365 -4.1410 34 1 3.4488 3.2154 1.9696 35 1 4.1082 4.6156 1.0904 36 1 4.8386 1.8671 3.2483 37 1 7.0527 1.3916 4.2135 38 1 9.0466 2.5260 3.3475 39 1 8.2384 6.0811 -0.7682 40 1 5.9213 5.2449 -0.2971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236689066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = 51.257008 kcal Electronic energy + Delta-G solvation = -21141.105232 eV Core-core repulsion = 18240.236291 eV Total energy + Delta-G solvation = -2900.868940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.26270 -36.54412 -34.63562 -34.06003 -32.10240 -30.75276 -28.95255 -28.13622 -25.79038 -23.84613 -23.06092 -21.94723 -20.76940 -20.32702 -19.79181 -17.08664 -16.81450 -15.60104 -15.34730 -14.98105 -14.63548 -14.56828 -14.20847 -13.58713 -13.34014 -13.17442 -12.85267 -12.82063 -12.46881 -12.09444 -11.94375 -11.82395 -11.41346 -11.33053 -11.02804 -10.84453 -10.75356 -10.61098 -10.49277 -10.35130 -10.20509 -10.13423 -9.69942 -9.55482 -8.99335 -8.56690 -8.00144 -7.21144 -6.88356 -6.09435 -3.48540 1.25764 1.71562 2.03063 2.48502 2.91018 3.28764 3.46348 3.56992 4.17519 4.48568 4.96806 5.14948 5.24549 5.26683 5.36289 5.37529 5.49442 5.56736 5.66851 5.77004 5.83083 5.90311 6.07265 6.14306 6.19714 6.23888 6.27522 6.32455 6.41521 6.46741 6.51549 6.54153 6.62086 6.67706 6.78753 6.90799 6.95395 7.07024 7.18794 7.36619 7.97976 8.27862 8.88987 9.61806 10.03673 11.04737 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.006640 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.024862 B = 4215.847488 C = 5081.463307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.132 4.132 4 C 0.138 3.862 5 N -0.592 5.592 6 C -0.261 4.261 7 H 0.080 0.920 8 C 0.048 3.952 9 N -0.891 5.891 10 Si 0.865 3.135 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.261 1.261 14 C 0.175 3.825 15 C -0.040 4.040 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.107 4.107 19 C -0.133 4.133 20 S 0.028 5.972 21 C -0.213 4.213 22 C -0.074 4.074 23 C -0.053 4.053 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.161 0.839 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -1.087 11.191 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.171 4.171 4 C 0.013 3.987 5 N -0.312 5.312 6 C -0.390 4.390 7 H 0.097 0.903 8 C -0.154 4.154 9 N -0.531 5.531 10 Si 0.694 3.306 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.185 1.185 14 C 0.050 3.950 15 C -0.045 4.045 16 C -0.155 4.155 17 C -0.125 4.125 18 C -0.131 4.131 19 C -0.248 4.248 20 S 0.289 5.711 21 C -0.346 4.346 22 C -0.103 4.103 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.179 0.821 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.288 -0.858 11.028 11.296 hybrid contribution -0.588 -1.264 -0.272 1.420 sum 1.701 -2.122 10.756 11.095 Atomic orbital electron populations 1.21748 0.96484 1.00673 1.01607 1.21519 0.95280 0.98280 1.01294 1.22085 0.98300 0.94796 1.01952 1.21164 0.92057 0.86276 0.99247 1.44255 1.73665 1.11711 1.01599 1.18698 1.33306 0.97988 0.88990 0.90270 1.25462 0.96963 0.97751 0.95264 1.69856 1.43158 1.40977 0.99102 0.87081 0.80471 0.83665 0.79335 1.21472 1.22984 1.18495 1.20110 0.89303 0.97557 0.88056 1.20729 0.97423 0.93873 0.92481 1.20516 0.97248 0.99745 0.97981 1.20892 0.92470 0.99289 0.99832 1.20238 0.98618 0.97506 0.96718 1.22643 0.96658 1.03319 1.02134 1.83676 1.11280 1.42354 1.33774 1.24808 0.95816 1.07942 1.06014 1.21298 0.98624 0.94909 0.95437 1.19145 0.92167 0.98313 0.96553 0.92801 0.93540 0.93112 0.92439 0.92790 0.92995 0.91379 0.92636 0.94726 0.92614 0.93000 0.91704 0.86319 0.86206 0.86596 0.82150 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.13 -1.91 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.35 5.54 -26.73 -0.15 -2.49 16 4 C 0.14 2.86 4.38 -4.05 -0.02 2.84 16 5 N -0.59 -13.07 2.02 -174.61 -0.35 -13.42 16 6 C -0.26 -6.70 7.97 -15.06 -0.12 -6.82 16 7 H 0.08 2.18 7.75 -52.48 -0.41 1.77 16 8 C 0.05 1.32 5.26 -17.43 -0.09 1.23 16 9 N -0.89 -26.11 13.97 55.49 0.78 -25.34 16 10 Si 0.86 22.38 25.18 -169.99 -4.28 18.10 16 11 H -0.29 -7.24 6.67 56.52 0.38 -6.87 16 12 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 13 H -0.26 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.18 3.31 5.52 -5.19 -0.03 3.28 16 15 C -0.04 -0.76 5.49 -104.28 -0.57 -1.33 16 16 C -0.13 -2.22 9.55 -40.13 -0.38 -2.61 16 17 C -0.10 -1.60 10.03 -39.64 -0.40 -2.00 16 18 C -0.11 -1.76 10.07 -39.26 -0.40 -2.16 16 19 C -0.13 -2.47 6.48 -38.42 -0.25 -2.72 16 20 S 0.03 0.48 23.23 -107.50 -2.50 -2.02 16 21 C -0.21 -3.81 11.02 28.84 0.32 -3.49 16 22 C -0.07 -1.47 9.18 -38.63 -0.35 -1.82 16 23 C -0.05 -1.07 5.98 -105.38 -0.63 -1.70 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.30 3.75 -51.93 -0.19 1.11 16 32 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.05 0.86 7.89 -51.93 -0.41 0.45 16 35 H 0.06 1.21 7.78 -51.92 -0.40 0.81 16 36 H 0.12 1.70 7.98 -52.48 -0.42 1.28 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.16 2.48 8.06 -52.48 -0.42 2.05 16 40 H 0.16 3.31 6.36 -52.49 -0.33 2.98 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -29.13 336.67 -10.12 -39.25 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.98 Total: 1.75 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.86 Total: -23.39 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.42 Total: -38.76 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.28 Total: 18.10 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.50 Total: -2.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.13 -10.12 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236689066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.506 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds