Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46495 * 109.47604 * 120.00454 * 2 1 3 5 5 C 1.36427 * 125.50405 * 300.04210 * 4 2 1 6 6 C 1.34622 * 108.53511 * 179.97438 * 5 4 2 7 7 C 1.41832 * 107.34796 * 0.02562 * 6 5 4 8 8 C 1.48346 * 126.45526 * 179.97438 * 7 6 5 9 9 C 1.39272 * 120.12920 * 129.75115 * 8 7 6 10 10 C 1.38012 * 119.96460 * 179.69870 * 9 8 7 11 11 C 1.38644 * 120.24307 * 0.60204 * 10 9 8 12 12 F 1.35095 * 119.86665 * 179.69879 * 11 10 9 13 13 C 1.38339 * 120.26708 * 359.67235 * 11 10 9 14 14 C 1.38698 * 120.02795 * 0.02562 * 13 11 10 15 15 O 1.35689 * 120.11945 * 179.97438 * 14 13 11 16 16 C 1.34803 * 117.00391 * 354.39450 * 15 14 13 17 17 H 1.08006 * 119.99701 * 5.06102 * 16 15 14 18 18 C 1.38622 * 120.00396 * 185.05518 * 16 15 14 19 19 N 1.31585 * 119.99953 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00106 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47272 * 89.99736 * 20 18 16 22 22 H 1.48493 * 109.47448 * 209.99984 * 20 18 16 23 23 H 1.48503 * 109.47095 * 330.00160 * 20 18 16 24 24 C 1.36068 * 107.08210 * 359.97438 * 7 6 5 25 25 H 1.09004 * 109.47131 * 299.99450 * 1 2 3 26 26 H 1.08996 * 109.47448 * 59.99874 * 1 2 3 27 27 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47131 * 240.00549 * 2 1 3 29 29 H 1.08997 * 109.47219 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47284 * 300.00871 * 3 2 1 31 31 H 1.09004 * 109.46631 * 60.00244 * 3 2 1 32 32 H 1.07997 * 125.73621 * 359.97438 * 5 4 2 33 33 H 1.07998 * 126.31990 * 180.25681 * 6 5 4 34 34 H 1.08003 * 120.01323 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.87366 * 180.27902 * 10 9 8 36 36 H 1.08006 * 119.98967 * 180.02562 * 13 11 10 37 37 H 0.96999 * 119.99501 * 179.97438 * 19 18 16 38 38 H 1.07998 * 125.97840 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7584 -0.3243 2.4842 6 6 2.3727 -1.1935 3.3086 7 6 3.0454 -2.1426 2.4973 8 6 3.8575 -3.2897 2.9718 9 6 3.6272 -4.5664 2.4650 10 6 4.3889 -5.6301 2.9043 11 6 5.3758 -5.4355 3.8585 12 9 6.1128 -6.4832 4.2874 13 6 5.6091 -4.1726 4.3726 14 6 4.8544 -3.0945 3.9346 15 8 5.0813 -1.8551 4.4380 16 6 5.9734 -1.7569 5.4439 17 1 6.5307 -2.6270 5.7583 18 6 6.1756 -0.5392 6.0747 19 7 7.0468 -0.4434 7.0562 20 14 5.2115 0.9656 5.5314 21 1 3.9502 1.0532 6.3104 22 1 6.0243 2.1859 5.7667 23 1 4.8932 0.8540 4.0852 24 6 2.8054 -1.8025 1.2018 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.1602 0.5209 2.7911 33 1 2.3533 -1.1739 4.3882 34 1 2.8558 -4.7230 1.7255 35 1 4.2121 -6.6187 2.5070 36 1 6.3793 -4.0259 5.1155 37 1 7.1885 0.4088 7.4973 38 1 3.1749 -2.3227 0.3305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239068108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = -1.759954 kcal Electronic energy + Delta-G solvation = -22506.716253 eV Core-core repulsion = 19037.335149 eV Total energy + Delta-G solvation = -3469.381104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.23461 -40.89292 -38.98909 -36.43461 -35.29855 -32.40361 -31.00915 -29.49389 -28.96976 -27.51973 -27.25224 -25.25198 -22.74997 -21.85146 -21.53112 -19.41469 -19.14822 -18.00744 -17.54539 -17.02641 -15.53175 -15.19583 -15.04035 -14.96167 -14.60399 -14.35095 -13.98456 -13.72554 -13.39805 -13.25027 -13.14882 -12.83757 -12.75202 -12.38656 -12.26425 -12.10085 -12.03834 -11.75243 -11.43985 -11.26207 -11.04479 -11.01355 -10.69429 -10.60005 -10.23429 -9.50422 -8.88649 -8.47017 -7.91480 -7.73490 -7.08475 -6.43255 -4.08835 1.80733 2.16020 2.67455 3.14329 3.23101 3.26741 3.46193 3.54097 4.25221 4.39850 4.44975 4.74756 4.75450 4.84427 5.04680 5.10512 5.14841 5.26222 5.42479 5.45953 5.48416 5.58475 5.59704 5.73292 5.75804 5.84742 5.93170 6.07883 6.23911 6.36463 6.51915 6.79049 6.87162 6.94379 6.98019 7.17296 7.46149 7.57540 7.66449 7.75940 7.79678 8.00192 8.91862 9.54162 10.63749 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.006840 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.644574 B = 4092.828894 C = 6293.854576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.164 4.164 4 N -0.447 5.447 5 C -0.025 4.025 6 C -0.164 4.164 7 C -0.095 4.095 8 C -0.092 4.092 9 C -0.046 4.046 10 C -0.240 4.240 11 C 0.135 3.865 12 F -0.151 7.151 13 C -0.261 4.261 14 C 0.192 3.808 15 O -0.191 6.191 16 C -0.391 4.391 17 H 0.106 0.894 18 C 0.067 3.933 19 N -0.876 5.876 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.251 1.251 24 C -0.015 4.015 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.280 0.720 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 0.603 -13.833 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 C -0.222 4.222 4 N -0.125 5.125 5 C -0.153 4.153 6 C -0.189 4.189 7 C -0.102 4.102 8 C -0.094 4.094 9 C -0.064 4.064 10 C -0.260 4.260 11 C 0.116 3.884 12 F -0.130 7.130 13 C -0.281 4.281 14 C 0.137 3.863 15 O -0.094 6.094 16 C -0.466 4.466 17 H 0.124 0.876 18 C -0.137 4.137 19 N -0.513 5.513 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.174 1.174 24 C -0.144 4.144 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.899 1.154 -14.003 18.412 hybrid contribution 0.076 0.442 0.203 0.492 sum -11.823 1.595 -13.800 18.242 Atomic orbital electron populations 1.22166 0.93947 1.02977 1.02819 1.21301 0.94950 0.93854 0.87054 1.22184 1.02406 0.94807 1.02784 1.44002 1.40219 1.22808 1.05424 1.21448 1.08075 1.03160 0.82635 1.20940 1.02034 0.96928 0.98999 1.17940 1.02663 0.97776 0.91820 1.17372 0.98178 0.92379 1.01448 1.20505 0.97561 0.90359 0.98013 1.20494 1.01505 0.99846 1.04134 1.17487 0.91790 0.83329 0.95826 1.91415 1.76006 1.56658 1.88946 1.21097 1.07271 0.91280 1.08453 1.18753 0.91381 0.84466 0.91664 1.83650 1.55950 1.23309 1.46480 1.20819 1.17061 0.99176 1.09583 0.87629 1.24445 0.96310 0.98318 0.94585 1.69667 1.32965 1.27077 1.21552 0.86241 0.79620 0.80447 0.81213 1.19730 1.21106 1.17445 1.21722 1.02149 0.92446 0.98059 0.91764 0.91127 0.91802 0.88785 0.91632 0.91093 0.91751 0.83062 0.84871 0.85951 0.86278 0.83821 0.91010 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.23 37.16 0.34 -0.94 16 2 C 0.13 1.28 3.54 -67.94 -0.24 1.04 16 3 C -0.16 -1.51 9.24 37.16 0.34 -1.16 16 4 N -0.45 -6.23 2.61 -109.76 -0.29 -6.52 16 5 C -0.03 -0.40 10.31 -16.79 -0.17 -0.57 16 6 C -0.16 -3.12 10.16 -39.49 -0.40 -3.52 16 7 C -0.10 -1.80 5.34 -105.14 -0.56 -2.36 16 8 C -0.09 -1.85 5.78 -104.71 -0.60 -2.46 16 9 C -0.05 -0.79 9.70 -39.28 -0.38 -1.17 16 10 C -0.24 -4.22 10.01 -39.51 -0.40 -4.61 16 11 C 0.13 2.72 7.29 -39.39 -0.29 2.43 16 12 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 13 C -0.26 -5.90 9.14 -39.37 -0.36 -6.26 16 14 C 0.19 4.48 6.63 -38.77 -0.26 4.22 16 15 O -0.19 -4.98 7.50 0.31 0.00 -4.98 16 16 C -0.39 -10.98 9.94 30.87 0.31 -10.68 16 17 H 0.11 3.06 5.44 -52.48 -0.29 2.78 16 18 C 0.07 1.89 5.49 -17.52 -0.10 1.79 16 19 N -0.88 -25.31 13.96 55.48 0.77 -24.54 16 20 Si 0.90 21.66 28.62 -169.99 -4.86 16.80 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.25 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.01 -0.23 11.27 -16.38 -0.18 -0.41 16 25 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 32 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 34 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.14 3.43 5.64 -52.48 -0.30 3.13 16 37 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -30.49 330.47 -7.07 -37.56 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.76 Total: 4.30 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -2.95 Total: -24.67 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.49 Total: -31.05 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.49 -7.07 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.800 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds