Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46495 * 109.47604 * 120.00454 * 2 1 3 5 5 C 1.36427 * 125.50405 * 300.04210 * 4 2 1 6 6 C 1.34622 * 108.53511 * 179.97438 * 5 4 2 7 7 C 1.41832 * 107.34796 * 0.02562 * 6 5 4 8 8 C 1.48346 * 126.45526 * 179.97438 * 7 6 5 9 9 C 1.39272 * 120.12920 * 129.75115 * 8 7 6 10 10 C 1.38012 * 119.96460 * 179.69870 * 9 8 7 11 11 C 1.38644 * 120.24307 * 0.60204 * 10 9 8 12 12 F 1.35095 * 119.86665 * 179.69879 * 11 10 9 13 13 C 1.38339 * 120.26708 * 359.67235 * 11 10 9 14 14 C 1.38698 * 120.02795 * 0.02562 * 13 11 10 15 15 O 1.35689 * 120.11945 * 179.97438 * 14 13 11 16 16 C 1.34803 * 117.00391 * 354.39450 * 15 14 13 17 17 H 1.08006 * 119.99701 * 5.06102 * 16 15 14 18 18 C 1.38622 * 120.00396 * 185.05518 * 16 15 14 19 19 N 1.31585 * 119.99953 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00106 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47272 * 89.99736 * 20 18 16 22 22 H 1.48493 * 109.47448 * 209.99984 * 20 18 16 23 23 H 1.48503 * 109.47095 * 330.00160 * 20 18 16 24 24 C 1.36068 * 107.08210 * 359.97438 * 7 6 5 25 25 H 1.09004 * 109.47131 * 299.99450 * 1 2 3 26 26 H 1.08996 * 109.47448 * 59.99874 * 1 2 3 27 27 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47131 * 240.00549 * 2 1 3 29 29 H 1.08997 * 109.47219 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47284 * 300.00871 * 3 2 1 31 31 H 1.09004 * 109.46631 * 60.00244 * 3 2 1 32 32 H 1.07997 * 125.73621 * 359.97438 * 5 4 2 33 33 H 1.07998 * 126.31990 * 180.25681 * 6 5 4 34 34 H 1.08003 * 120.01323 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.87366 * 180.27902 * 10 9 8 36 36 H 1.08006 * 119.98967 * 180.02562 * 13 11 10 37 37 H 0.96999 * 119.99501 * 179.97438 * 19 18 16 38 38 H 1.07998 * 125.97840 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7584 -0.3243 2.4842 6 6 2.3727 -1.1935 3.3086 7 6 3.0454 -2.1426 2.4973 8 6 3.8575 -3.2897 2.9718 9 6 3.6272 -4.5664 2.4650 10 6 4.3889 -5.6301 2.9043 11 6 5.3758 -5.4355 3.8585 12 9 6.1128 -6.4832 4.2874 13 6 5.6091 -4.1726 4.3726 14 6 4.8544 -3.0945 3.9346 15 8 5.0813 -1.8551 4.4380 16 6 5.9734 -1.7569 5.4439 17 1 6.5307 -2.6270 5.7583 18 6 6.1756 -0.5392 6.0747 19 7 7.0468 -0.4434 7.0562 20 14 5.2115 0.9656 5.5314 21 1 3.9502 1.0532 6.3104 22 1 6.0243 2.1859 5.7667 23 1 4.8932 0.8540 4.0852 24 6 2.8054 -1.8025 1.2018 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.1602 0.5209 2.7911 33 1 2.3533 -1.1739 4.3882 34 1 2.8558 -4.7230 1.7255 35 1 4.2121 -6.6187 2.5070 36 1 6.3793 -4.0259 5.1155 37 1 7.1885 0.4088 7.4973 38 1 3.1749 -2.3227 0.3305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239068108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = -17.512299 kcal Electronic energy + Delta-G solvation = -22507.399326 eV Core-core repulsion = 19037.335149 eV Total energy + Delta-G solvation = -3470.064177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.84176 -42.10366 -40.69843 -38.11792 -36.22444 -34.47727 -32.42077 -31.08451 -30.23382 -28.65963 -28.15234 -27.21029 -24.10449 -23.22729 -22.98047 -20.85821 -20.29657 -19.90168 -19.24193 -18.12327 -17.28540 -16.85303 -16.59459 -16.34672 -15.84471 -15.64627 -15.48271 -15.30892 -14.95896 -14.74619 -14.41611 -14.22490 -14.07354 -13.71621 -13.59210 -13.26159 -13.01623 -12.96287 -12.82783 -12.59800 -12.38685 -12.24374 -12.13550 -12.06101 -11.92172 -11.51704 -10.93128 -9.93434 -9.42924 -9.12793 -8.56136 -8.53032 -6.24086 0.21411 0.54147 1.27981 1.32992 1.46093 1.53053 2.11256 2.12766 2.27173 2.71637 2.98286 3.08349 3.42947 3.72674 4.01567 4.05397 4.08835 4.15265 4.22815 4.25751 4.40142 4.52864 4.64876 4.68988 4.82300 4.85505 4.88725 4.95267 5.10001 5.22613 5.27405 5.28282 5.31262 5.35975 5.47494 5.56917 5.77696 5.85007 6.10861 6.16654 6.39116 6.65825 6.81657 7.56443 8.58559 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.006840 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.644574 B = 4092.828894 C = 6293.854576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.163 4.163 4 N -0.438 5.438 5 C -0.013 4.013 6 C -0.206 4.206 7 C -0.139 4.139 8 C -0.083 4.083 9 C -0.034 4.034 10 C -0.206 4.206 11 C 0.119 3.881 12 F -0.150 7.150 13 C -0.280 4.280 14 C 0.156 3.844 15 O -0.214 6.214 16 C -0.400 4.400 17 H 0.076 0.924 18 C 0.016 3.984 19 N -0.921 5.921 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.259 1.259 24 C 0.005 3.995 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.175 0.825 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.285 0.715 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 0.478 -17.947 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.113 5.113 5 C -0.143 4.143 6 C -0.231 4.231 7 C -0.146 4.146 8 C -0.085 4.085 9 C -0.052 4.052 10 C -0.225 4.225 11 C 0.100 3.900 12 F -0.129 7.129 13 C -0.300 4.300 14 C 0.105 3.895 15 O -0.119 6.119 16 C -0.476 4.476 17 H 0.094 0.906 18 C -0.183 4.183 19 N -0.561 5.561 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.183 1.183 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.123 0.877 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.867 0.999 -18.152 23.484 hybrid contribution 0.864 0.233 1.271 1.555 sum -14.003 1.232 -16.881 21.967 Atomic orbital electron populations 1.22141 0.92221 1.03077 1.03919 1.21729 0.96278 0.93923 0.85790 1.22196 1.01205 0.94660 1.03992 1.44367 1.38760 1.22072 1.06140 1.21659 1.06917 1.02622 0.83070 1.20904 1.04766 0.99151 0.98277 1.18046 1.04515 0.98546 0.93472 1.17809 0.96513 0.94519 0.99676 1.21042 0.97736 0.88527 0.97879 1.21025 0.98491 1.01936 1.01053 1.17633 0.93056 0.82352 0.96948 1.91415 1.76204 1.56173 1.89120 1.21063 1.07217 0.93020 1.08739 1.19324 0.93035 0.83915 0.93210 1.83621 1.56551 1.24844 1.46919 1.20715 1.17579 0.98636 1.10712 0.90608 1.25208 0.97368 1.00977 0.94705 1.69750 1.35045 1.28078 1.23267 0.85265 0.78539 0.77255 0.80096 1.18894 1.19606 1.18280 1.22082 1.00630 0.92301 0.97598 0.92331 0.88429 0.92181 0.86558 0.93476 0.88080 0.92449 0.80741 0.87747 0.81173 0.81937 0.86821 0.90560 0.79342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.23 71.98 0.66 -1.13 16 2 C 0.12 1.87 3.54 44.99 0.16 2.03 16 3 C -0.16 -2.40 9.24 71.98 0.66 -1.73 16 4 N -0.44 -10.78 2.61 -501.16 -1.31 -12.09 16 5 C -0.01 -0.39 10.31 83.15 0.86 0.47 16 6 C -0.21 -7.88 10.16 22.33 0.23 -7.65 16 7 C -0.14 -5.10 5.34 -20.20 -0.11 -5.21 16 8 C -0.08 -3.29 5.78 -19.92 -0.12 -3.40 16 9 C -0.03 -1.04 9.70 22.47 0.22 -0.82 16 10 C -0.21 -6.47 10.01 22.31 0.22 -6.25 16 11 C 0.12 4.75 7.29 22.39 0.16 4.92 16 12 F -0.15 -5.86 17.26 44.97 0.78 -5.08 16 13 C -0.28 -13.39 9.14 22.40 0.20 -13.18 16 14 C 0.16 7.61 6.63 22.80 0.15 7.76 16 15 O -0.21 -11.86 7.50 -21.80 -0.16 -12.02 16 16 C -0.40 -24.27 9.94 67.91 0.68 -23.59 16 17 H 0.08 4.89 5.44 -2.91 -0.02 4.87 16 18 C 0.02 0.96 5.49 84.82 0.47 1.43 16 19 N -0.92 -56.36 13.96 21.61 0.30 -56.06 16 20 Si 0.97 46.87 28.62 68.60 1.96 48.84 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 24 C 0.01 0.14 11.27 83.51 0.94 1.08 16 25 H 0.06 0.76 7.91 -2.38 -0.02 0.74 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.12 1.32 8.06 -2.38 -0.02 1.30 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.93 7.91 -2.38 -0.02 0.91 16 32 H 0.18 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.11 6.03 5.64 -2.91 -0.02 6.02 16 37 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -72.79 330.47 8.03 -64.76 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.07 Total: 16.94 kcal Atomic # 6 Polarization: -50.68 SS G_CDS: 5.39 Total: -45.29 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -1.01 Total: -68.15 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.16 Total: -12.02 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.78 Total: -5.08 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.96 Total: 48.84 kcal Total: -72.79 8.03 -64.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.251 kcal (2) G-P(sol) polarization free energy of solvation -72.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds