Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37969 * 120.49597 * 2 1 4 4 N 1.31925 * 120.89064 * 180.02562 * 3 2 1 5 5 C 1.31958 * 122.02903 * 0.02562 * 4 3 2 6 6 C 1.37929 * 120.89001 * 0.02562 * 5 4 3 7 7 C 1.39854 * 120.49303 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.91780 * 359.95459 * 7 2 1 9 9 C 1.36691 * 120.33921 * 244.74819 * 8 7 2 10 10 C 1.41141 * 120.58630 * 179.83716 * 9 8 7 11 11 C 1.41223 * 119.49228 * 180.20943 * 10 9 8 12 12 H 1.08002 * 120.00021 * 330.04078 * 11 10 9 13 13 C 1.39940 * 119.99989 * 150.03885 * 11 10 9 14 14 N 1.30825 * 119.99970 * 161.62288 * 13 11 10 15 15 Si 1.86794 * 119.99818 * 341.62024 * 13 11 10 16 16 H 1.48501 * 109.47251 * 95.42011 * 15 13 11 17 17 H 1.48502 * 109.47282 * 215.41689 * 15 13 11 18 18 H 1.48503 * 109.47298 * 335.41520 * 15 13 11 19 19 C 1.39949 * 121.01947 * 0.39451 * 10 9 8 20 20 C 1.39889 * 120.11360 * 359.83832 * 19 10 9 21 21 C 1.40858 * 121.13551 * 179.97438 * 20 19 10 22 22 C 1.36190 * 119.60998 * 180.02562 * 21 20 19 23 23 C 1.39253 * 120.93671 * 359.95966 * 22 21 20 24 24 C 1.36532 * 120.98601 * 0.02562 * 23 22 21 25 25 C 1.39820 * 119.73317 * 0.02562 * 24 23 22 26 26 H 1.09006 * 109.46522 * 269.97645 * 1 2 3 27 27 H 1.09004 * 109.47133 * 29.96595 * 1 2 3 28 28 H 1.08995 * 109.47522 * 149.97465 * 1 2 3 29 29 H 1.07996 * 119.55661 * 0.05033 * 3 2 1 30 30 H 1.07994 * 119.55168 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.49560 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.71035 * 359.97438 * 9 8 7 33 33 H 0.97000 * 120.00092 * 179.97438 * 14 13 11 34 34 H 1.07994 * 119.94210 * 179.81967 * 19 10 9 35 35 H 1.07996 * 120.19411 * 0.02562 * 21 20 19 36 36 H 1.07993 * 119.53392 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.50715 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.13378 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2072 1.1888 0.0000 4 7 3.5264 1.1979 -0.0005 5 6 4.2340 0.0840 -0.0015 6 6 3.6145 -1.1483 -0.0027 7 6 2.2167 -1.2051 -0.0005 8 6 1.5078 -2.5060 -0.0001 9 6 1.6200 -3.3531 1.0668 10 6 0.9442 -4.5922 1.0741 11 6 1.0728 -5.4477 2.1904 12 1 1.9802 -5.4385 2.7760 13 6 0.0246 -6.3072 2.5377 14 7 0.2510 -7.3333 3.3170 15 14 -1.6978 -5.9894 1.8885 16 1 -1.9227 -6.7993 0.6642 17 1 -2.6943 -6.3683 2.9224 18 1 -1.8461 -4.5481 1.5629 19 6 0.1515 -4.9878 -0.0093 20 6 0.0153 -4.1509 -1.1219 21 6 -0.7765 -4.5277 -2.2242 22 6 -0.8869 -3.6890 -3.2914 23 6 -0.2285 -2.4621 -3.3089 24 6 0.5468 -2.0654 -2.2574 25 6 0.6852 -2.9000 -1.1442 26 1 -0.3632 -0.0004 1.0278 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6681 2.1246 0.0008 30 1 5.3125 0.1382 -0.0023 31 1 4.1998 -2.0559 -0.0031 32 1 2.2295 -3.0709 1.9125 33 1 -0.4757 -7.9290 3.5581 34 1 -0.3556 -5.9410 0.0135 35 1 -1.2929 -5.4762 -2.2230 36 1 -1.4940 -3.9794 -4.1361 37 1 -0.3325 -1.8147 -4.1672 38 1 1.0510 -1.1107 -2.2853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240609651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = 58.614644 kcal Electronic energy + Delta-G solvation = -21912.859254 eV Core-core repulsion = 18876.865414 eV Total energy + Delta-G solvation = -3035.993841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24766 -38.89917 -35.98753 -34.41382 -33.18525 -32.14424 -30.66686 -29.98845 -28.66632 -26.89452 -25.32728 -23.78509 -22.17628 -21.98624 -21.21257 -20.36720 -18.01195 -16.64668 -16.33133 -16.19449 -15.70084 -15.27725 -14.86278 -14.44506 -14.10209 -13.54501 -13.40613 -13.24323 -12.97393 -12.80637 -12.67649 -12.45155 -12.40957 -11.96552 -11.87493 -11.42428 -11.28563 -11.00904 -10.98319 -10.48873 -10.23491 -9.99498 -9.77635 -9.38582 -9.29129 -9.20037 -8.85075 -8.63263 -7.78530 -7.19879 -7.05327 -4.67480 1.17241 1.30981 1.59850 1.99485 2.85639 2.98181 3.09040 3.21656 3.70413 3.85386 3.97245 4.57024 4.59456 4.87160 5.00314 5.11168 5.18220 5.31190 5.46697 5.53966 5.64203 5.64850 5.82443 5.87547 5.91608 5.96059 6.09704 6.14645 6.30003 6.32098 6.39704 6.51631 6.52758 6.65329 6.81671 6.92127 6.98663 7.06412 7.17978 7.22019 7.35644 7.64259 7.71868 7.81019 8.09678 8.12430 8.33899 8.53136 9.80301 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.006295 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.991196 B = 4447.155310 C = 5556.451052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C 0.091 3.909 4 N -0.492 5.492 5 C 0.087 3.913 6 C -0.158 4.158 7 C 0.021 3.979 8 C -0.049 4.049 9 C -0.108 4.108 10 C 0.087 3.913 11 C -0.423 4.423 12 H 0.095 0.905 13 C 0.082 3.918 14 N -0.792 5.792 15 Si 0.917 3.083 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.242 1.242 19 C -0.286 4.286 20 C 0.025 3.975 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.188 4.188 24 C -0.075 4.075 25 C -0.117 4.117 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.290 0.710 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 9.116 -5.886 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.125 4.125 3 C -0.065 4.065 4 N -0.201 5.201 5 C -0.070 4.070 6 C -0.178 4.178 7 C 0.013 3.987 8 C -0.049 4.049 9 C -0.127 4.127 10 C 0.083 3.917 11 C -0.450 4.450 12 H 0.113 0.887 13 C -0.139 4.139 14 N -0.414 5.414 15 Si 0.744 3.256 16 H -0.194 1.194 17 H -0.219 1.219 18 H -0.165 1.165 19 C -0.307 4.307 20 C 0.024 3.976 21 C -0.169 4.169 22 C -0.125 4.125 23 C -0.206 4.206 24 C -0.093 4.093 25 C -0.118 4.118 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.283 9.676 -5.672 11.219 hybrid contribution -1.115 -1.003 -0.116 1.504 sum -0.832 8.673 -5.787 10.460 Atomic orbital electron populations 1.20944 0.90222 1.03863 1.02853 1.21045 0.97698 0.93079 1.00654 1.22499 0.89883 0.97115 0.97052 1.67583 1.08191 1.31688 1.12648 1.22561 1.00012 0.87624 0.96767 1.22308 0.94289 0.99649 1.01523 1.19179 0.92746 0.92781 0.94040 1.19107 0.98634 0.92177 0.94984 1.21117 1.01258 0.93634 0.96656 1.17487 0.90853 0.90532 0.92778 1.19658 1.02486 1.13591 1.09261 0.88734 1.26272 1.02566 0.92179 0.92907 1.69683 1.35733 1.09265 1.26743 0.86145 0.79512 0.82213 0.77780 1.19356 1.21898 1.16485 1.20763 1.13520 1.01264 0.95105 1.17710 0.93609 0.92461 0.93775 1.20912 1.01582 0.99877 0.94578 1.20543 0.99581 0.94641 0.97732 1.20388 1.03209 0.97814 0.99229 1.20670 0.97595 0.97971 0.93112 1.18365 1.02968 0.95761 0.94669 0.91067 0.91711 0.89441 0.83174 0.83039 0.84669 0.87217 0.89942 0.87747 0.87189 0.87750 0.87861 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.28 36.01 0.33 -1.38 16 2 C -0.12 -1.87 5.00 -104.11 -0.52 -2.39 16 3 C 0.09 1.28 10.85 -17.61 -0.19 1.09 16 4 N -0.49 -7.33 10.35 -13.35 -0.14 -7.47 16 5 C 0.09 1.20 11.17 -17.61 -0.20 1.00 16 6 C -0.16 -2.39 9.85 -39.08 -0.39 -2.77 16 7 C 0.02 0.35 4.56 -104.60 -0.48 -0.13 16 8 C -0.05 -0.95 4.79 -103.14 -0.49 -1.44 16 9 C -0.11 -2.29 9.33 -39.04 -0.36 -2.65 16 10 C 0.09 2.05 5.10 -107.02 -0.55 1.50 16 11 C -0.42 -10.60 9.51 -37.81 -0.36 -10.96 16 12 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 13 C 0.08 2.02 5.38 -17.34 -0.09 1.93 16 14 N -0.79 -19.85 13.93 55.55 0.77 -19.07 16 15 Si 0.92 20.10 24.51 -169.99 -4.17 15.93 16 16 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.24 -5.47 6.88 56.52 0.39 -5.08 16 19 C -0.29 -6.68 6.86 -38.32 -0.26 -6.94 16 20 C 0.02 0.53 5.74 -106.88 -0.61 -0.08 16 21 C -0.15 -2.93 9.78 -39.33 -0.38 -3.31 16 22 C -0.11 -1.82 9.95 -39.94 -0.40 -2.22 16 23 C -0.19 -3.15 9.96 -39.82 -0.40 -3.55 16 24 C -0.08 -1.35 7.56 -39.61 -0.30 -1.65 16 25 C -0.12 -2.36 4.91 -104.65 -0.51 -2.87 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.09 1.42 4.51 -51.93 -0.23 1.19 16 29 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 34 H 0.10 2.47 4.69 -52.49 -0.25 2.22 16 35 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.10 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.11 1.76 6.37 -52.49 -0.33 1.43 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -26.42 313.64 -9.18 -35.59 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.21 Total: 7.11 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -6.16 Total: -36.82 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.64 Total: -26.54 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.17 Total: 15.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.42 -9.18 -35.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240609651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.209 kcal (2) G-P(sol) polarization free energy of solvation -26.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds