Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37969 * 120.49597 * 2 1 4 4 N 1.31925 * 120.89064 * 180.02562 * 3 2 1 5 5 C 1.31958 * 122.02903 * 0.02562 * 4 3 2 6 6 C 1.37929 * 120.89001 * 0.02562 * 5 4 3 7 7 C 1.39854 * 120.49303 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.91780 * 359.95459 * 7 2 1 9 9 C 1.36691 * 120.33921 * 244.74819 * 8 7 2 10 10 C 1.41141 * 120.58630 * 179.83716 * 9 8 7 11 11 C 1.41223 * 119.49228 * 180.20943 * 10 9 8 12 12 H 1.08002 * 120.00021 * 330.04078 * 11 10 9 13 13 C 1.39940 * 119.99989 * 150.03885 * 11 10 9 14 14 N 1.30825 * 119.99970 * 161.62288 * 13 11 10 15 15 Si 1.86794 * 119.99818 * 341.62024 * 13 11 10 16 16 H 1.48501 * 109.47251 * 95.42011 * 15 13 11 17 17 H 1.48502 * 109.47282 * 215.41689 * 15 13 11 18 18 H 1.48503 * 109.47298 * 335.41520 * 15 13 11 19 19 C 1.39949 * 121.01947 * 0.39451 * 10 9 8 20 20 C 1.39889 * 120.11360 * 359.83832 * 19 10 9 21 21 C 1.40858 * 121.13551 * 179.97438 * 20 19 10 22 22 C 1.36190 * 119.60998 * 180.02562 * 21 20 19 23 23 C 1.39253 * 120.93671 * 359.95966 * 22 21 20 24 24 C 1.36532 * 120.98601 * 0.02562 * 23 22 21 25 25 C 1.39820 * 119.73317 * 0.02562 * 24 23 22 26 26 H 1.09006 * 109.46522 * 269.97645 * 1 2 3 27 27 H 1.09004 * 109.47133 * 29.96595 * 1 2 3 28 28 H 1.08995 * 109.47522 * 149.97465 * 1 2 3 29 29 H 1.07996 * 119.55661 * 0.05033 * 3 2 1 30 30 H 1.07994 * 119.55168 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.49560 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.71035 * 359.97438 * 9 8 7 33 33 H 0.97000 * 120.00092 * 179.97438 * 14 13 11 34 34 H 1.07994 * 119.94210 * 179.81967 * 19 10 9 35 35 H 1.07996 * 120.19411 * 0.02562 * 21 20 19 36 36 H 1.07993 * 119.53392 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.50715 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.13378 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2072 1.1888 0.0000 4 7 3.5264 1.1979 -0.0005 5 6 4.2340 0.0840 -0.0015 6 6 3.6145 -1.1483 -0.0027 7 6 2.2167 -1.2051 -0.0005 8 6 1.5078 -2.5060 -0.0001 9 6 1.6200 -3.3531 1.0668 10 6 0.9442 -4.5922 1.0741 11 6 1.0728 -5.4477 2.1904 12 1 1.9802 -5.4385 2.7760 13 6 0.0246 -6.3072 2.5377 14 7 0.2510 -7.3333 3.3170 15 14 -1.6978 -5.9894 1.8885 16 1 -1.9227 -6.7993 0.6642 17 1 -2.6943 -6.3683 2.9224 18 1 -1.8461 -4.5481 1.5629 19 6 0.1515 -4.9878 -0.0093 20 6 0.0153 -4.1509 -1.1219 21 6 -0.7765 -4.5277 -2.2242 22 6 -0.8869 -3.6890 -3.2914 23 6 -0.2285 -2.4621 -3.3089 24 6 0.5468 -2.0654 -2.2574 25 6 0.6852 -2.9000 -1.1442 26 1 -0.3632 -0.0004 1.0278 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6681 2.1246 0.0008 30 1 5.3125 0.1382 -0.0023 31 1 4.1998 -2.0559 -0.0031 32 1 2.2295 -3.0709 1.9125 33 1 -0.4757 -7.9290 3.5581 34 1 -0.3556 -5.9410 0.0135 35 1 -1.2929 -5.4762 -2.2230 36 1 -1.4940 -3.9794 -4.1361 37 1 -0.3325 -1.8147 -4.1672 38 1 1.0510 -1.1107 -2.2853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240609651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = 46.563553 kcal Electronic energy + Delta-G solvation = -21913.381829 eV Core-core repulsion = 18876.865414 eV Total energy + Delta-G solvation = -3036.516415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52760 -40.33690 -37.58702 -35.87397 -34.76390 -33.39429 -32.06241 -31.59647 -30.14876 -28.06074 -27.01834 -25.15899 -23.61991 -23.25984 -22.75514 -21.81989 -19.64760 -18.08286 -17.95128 -17.39002 -17.18178 -16.81927 -16.06085 -15.97225 -15.36940 -15.13998 -14.88683 -14.52876 -14.36054 -14.24949 -14.16570 -13.97381 -13.58576 -13.51299 -13.25891 -12.89890 -12.72950 -12.59645 -12.50723 -12.05107 -11.84264 -11.65384 -11.41976 -11.05105 -10.68466 -10.43311 -10.23011 -9.81184 -9.39019 -9.01810 -8.64445 -6.54754 -0.28693 0.19583 0.27762 0.40871 1.20432 1.26334 1.31159 1.45461 2.04255 2.09371 2.83162 2.87637 3.47810 3.50514 3.60098 3.90554 3.96806 4.03212 4.12842 4.19480 4.25351 4.48507 4.51893 4.55071 4.65693 4.73683 4.74116 4.78191 4.85301 4.91832 4.94311 5.10588 5.21427 5.29894 5.35729 5.44906 5.47163 5.58170 5.70349 5.76724 5.81028 5.89437 6.03290 6.27297 6.29370 6.58064 6.71290 7.01192 8.05174 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.006295 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.991196 B = 4447.155310 C = 5556.451052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 C 0.097 3.903 4 N -0.502 5.502 5 C 0.092 3.908 6 C -0.165 4.165 7 C -0.006 4.006 8 C -0.028 4.028 9 C -0.136 4.136 10 C 0.077 3.923 11 C -0.466 4.466 12 H 0.066 0.934 13 C 0.053 3.947 14 N -0.835 5.835 15 Si 0.964 3.036 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.256 1.256 19 C -0.295 4.295 20 C -0.005 4.005 21 C -0.167 4.167 22 C -0.096 4.096 23 C -0.168 4.168 24 C -0.079 4.079 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.297 0.703 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 12.356 -9.265 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.127 4.127 3 C -0.060 4.060 4 N -0.211 5.211 5 C -0.064 4.064 6 C -0.184 4.184 7 C -0.014 4.014 8 C -0.028 4.028 9 C -0.155 4.155 10 C 0.075 3.925 11 C -0.494 4.494 12 H 0.084 0.916 13 C -0.163 4.163 14 N -0.460 5.460 15 Si 0.788 3.212 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.180 1.180 19 C -0.315 4.315 20 C -0.005 4.005 21 C -0.185 4.185 22 C -0.114 4.114 23 C -0.186 4.186 24 C -0.096 4.096 25 C -0.123 4.123 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.200 0.800 30 H 0.200 0.800 31 H 0.156 0.844 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.546 12.915 -9.057 15.783 hybrid contribution -0.815 -1.718 0.567 1.984 sum -1.360 11.197 -8.490 14.117 Atomic orbital electron populations 1.20943 0.89535 1.04281 1.02944 1.21158 0.98226 0.92763 1.00548 1.22968 0.89730 0.97796 0.95507 1.67692 1.08705 1.31927 1.12732 1.23001 1.01437 0.86694 0.95284 1.22421 0.93716 1.00631 1.01659 1.19180 0.93587 0.92073 0.96538 1.19337 0.97032 0.92730 0.93739 1.21109 1.02649 0.93745 0.97979 1.17604 0.91369 0.91177 0.92369 1.19581 1.02538 1.16395 1.10900 0.91595 1.26771 1.04675 0.91849 0.93032 1.69702 1.36731 1.10478 1.29107 0.85453 0.76952 0.80981 0.77795 1.18816 1.20371 1.18032 1.20853 1.13430 1.01339 0.95866 1.18009 0.95100 0.93210 0.94183 1.21133 1.01630 1.01002 0.94717 1.20999 0.98740 0.93939 0.97730 1.20931 1.00501 0.97689 0.99509 1.20861 0.98010 0.98247 0.92532 1.18697 1.02377 0.95594 0.95637 0.91231 0.88466 0.91691 0.80012 0.80029 0.84412 0.87214 0.89254 0.88755 0.86497 0.83867 0.83887 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.28 71.24 0.66 -2.39 16 2 C -0.13 -3.47 5.00 -19.54 -0.10 -3.57 16 3 C 0.10 2.35 10.85 84.61 0.92 3.27 16 4 N -0.50 -13.25 10.35 -196.16 -2.03 -15.28 16 5 C 0.09 2.29 11.17 84.60 0.95 3.23 16 6 C -0.16 -4.74 9.85 22.60 0.22 -4.52 16 7 C -0.01 -0.19 4.56 -19.85 -0.09 -0.28 16 8 C -0.03 -1.10 4.79 -18.90 -0.09 -1.19 16 9 C -0.14 -6.07 9.33 22.62 0.21 -5.86 16 10 C 0.08 3.89 5.10 -21.42 -0.11 3.78 16 11 C -0.47 -25.40 9.51 23.42 0.22 -25.17 16 12 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 13 C 0.05 2.81 5.38 85.26 0.46 3.27 16 14 N -0.84 -44.70 13.93 21.83 0.30 -44.40 16 15 Si 0.96 43.23 24.51 68.60 1.68 44.91 16 16 H -0.26 -11.36 6.71 99.48 0.67 -10.69 16 17 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.26 -11.91 6.88 99.48 0.68 -11.23 16 19 C -0.29 -14.25 6.86 23.08 0.16 -14.09 16 20 C 0.00 -0.21 5.74 -21.33 -0.12 -0.33 16 21 C -0.17 -6.10 9.78 22.43 0.22 -5.89 16 22 C -0.10 -2.84 9.95 22.04 0.22 -2.62 16 23 C -0.17 -4.74 9.96 22.12 0.22 -4.52 16 24 C -0.08 -2.53 7.56 22.25 0.17 -2.36 16 25 C -0.12 -4.79 4.91 -19.89 -0.10 -4.89 16 26 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.06 1.96 4.51 -2.39 -0.01 1.95 16 29 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.30 14.26 8.30 -92.71 -0.77 13.49 16 34 H 0.09 4.65 4.69 -2.91 -0.01 4.63 16 35 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.12 3.57 6.37 -2.91 -0.02 3.55 16 Total: -1.00 -60.65 313.64 4.99 -55.66 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 1.02 Total: 23.24 kcal Atomic # 6 Polarization: -68.15 SS G_CDS: 4.02 Total: -64.13 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.73 Total: -59.68 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.68 Total: 44.91 kcal Total: -60.65 4.99 -55.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240609651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.221 kcal (2) G-P(sol) polarization free energy of solvation -60.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds