Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47243 * 2 1 4 4 C 1.53006 * 109.47365 * 239.99846 * 2 1 3 5 5 N 1.46500 * 109.47043 * 295.00324 * 4 2 1 6 6 C 1.34851 * 125.89760 * 124.71102 * 5 4 2 7 7 C 1.36430 * 107.60627 * 179.84043 * 6 5 4 8 8 C 1.48492 * 126.22244 * 180.16194 * 7 6 5 9 9 C 1.38935 * 120.41446 * 130.00598 * 8 7 6 10 10 C 1.40961 * 118.13137 * 179.76808 * 9 8 7 11 11 C 1.41381 * 120.57323 * 180.21722 * 10 9 8 12 12 H 1.08001 * 119.99467 * 330.80718 * 11 10 9 13 13 C 1.39886 * 119.99925 * 150.80856 * 11 10 9 14 14 N 1.30864 * 119.99945 * 161.61347 * 13 11 10 15 15 Si 1.86798 * 120.00211 * 341.61002 * 13 11 10 16 16 H 1.48497 * 109.47274 * 95.40226 * 15 13 11 17 17 H 1.48503 * 109.47516 * 215.39983 * 15 13 11 18 18 H 1.48496 * 109.47120 * 335.39930 * 15 13 11 19 19 C 1.40797 * 118.85587 * 0.48342 * 10 9 8 20 20 N 1.31508 * 120.68011 * 359.77906 * 19 10 9 21 21 C 1.32162 * 122.07105 * 359.97112 * 20 19 10 22 22 F 1.35097 * 119.45766 * 179.97438 * 21 20 19 23 23 C 1.40843 * 107.55745 * 0.42392 * 7 6 5 24 24 N 1.30669 * 108.10416 * 359.73681 * 23 7 6 25 25 H 1.08998 * 109.47470 * 59.99852 * 1 2 3 26 26 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47214 * 300.00243 * 1 2 3 28 28 H 1.09003 * 109.46983 * 119.99625 * 2 1 3 29 29 H 1.09003 * 109.46970 * 60.00250 * 3 2 1 30 30 H 1.09006 * 109.47300 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47272 * 299.99965 * 3 2 1 32 32 H 1.08993 * 109.46524 * 54.99986 * 4 2 1 33 33 H 1.08993 * 109.47200 * 175.00286 * 4 2 1 34 34 H 1.08004 * 126.19507 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.92681 * 359.97438 * 9 8 7 36 36 H 0.97005 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.65849 * 179.75257 * 19 10 9 38 38 H 1.07998 * 125.94672 * 179.74204 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 -2.1329 -1.1906 6 6 0.9540 -2.8008 -2.1311 7 6 0.8061 -4.0867 -1.6998 8 6 0.1043 -5.1788 -2.4207 9 6 0.7200 -6.4109 -2.6025 10 6 0.0079 -7.4148 -3.2894 11 6 0.5834 -8.6891 -3.4993 12 1 1.6554 -8.7901 -3.5838 13 6 -0.2356 -9.8188 -3.5976 14 7 0.2269 -10.9173 -4.1378 15 14 -1.9896 -9.7595 -2.9576 16 1 -2.9138 -9.4401 -4.0752 17 1 -2.3503 -11.0786 -2.3787 18 1 -2.0991 -8.7127 -1.9101 19 6 -1.2842 -7.1250 -3.7679 20 7 -1.8212 -5.9403 -3.5747 21 6 -1.1843 -4.9777 -2.9309 22 9 -1.7860 -3.7798 -2.7628 23 6 1.4349 -4.1884 -0.4437 24 7 1.9378 -3.0198 -0.1454 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 3.1262 -0.6444 -1.2951 34 1 0.5821 -2.3926 -3.0593 35 1 1.7150 -6.5952 -2.2251 36 1 -0.3411 -11.7007 -4.2063 37 1 -1.8398 -7.8834 -4.2995 38 1 1.4917 -5.0775 0.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240891415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = 44.496305 kcal Electronic energy + Delta-G solvation = -22143.256019 eV Core-core repulsion = 18708.173488 eV Total energy + Delta-G solvation = -3435.082531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.66741 -40.94432 -38.46023 -36.59436 -33.99886 -32.60899 -31.48720 -31.00304 -28.60661 -27.41082 -26.09881 -25.35696 -22.93335 -21.66965 -21.23792 -20.21225 -19.61117 -17.87574 -16.97882 -16.72983 -15.94416 -15.66753 -15.12180 -14.76164 -14.71013 -14.43068 -13.78268 -13.56650 -13.32245 -13.05647 -12.99761 -12.67823 -12.51544 -12.34088 -12.21251 -12.17945 -11.89882 -11.44401 -11.25303 -11.11605 -11.03422 -10.96374 -10.82554 -10.43611 -10.18820 -9.49953 -9.18501 -9.03006 -8.50794 -8.08068 -7.43054 -7.17795 -4.70441 1.87751 2.24410 2.38346 2.63795 3.02245 3.10078 3.18862 3.23396 3.81640 4.27843 4.33596 4.57024 4.74454 4.91105 4.96004 5.08808 5.16055 5.19827 5.27370 5.35903 5.42169 5.59324 5.63250 5.66493 5.80814 5.86600 5.95242 6.05938 6.12335 6.14621 6.15804 6.56883 6.67565 6.89404 7.00512 7.17477 7.21483 7.33822 7.77582 7.93217 8.04506 8.25483 8.46486 9.05154 9.82552 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033508 B = 0.003739 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.414842 B = 7486.553472 C = 7920.867979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.140 3.860 5 N -0.372 5.372 6 C 0.070 3.930 7 C -0.179 4.179 8 C -0.034 4.034 9 C -0.145 4.145 10 C 0.038 3.962 11 C -0.424 4.424 12 H 0.098 0.902 13 C 0.084 3.916 14 N -0.791 5.791 15 Si 0.905 3.095 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.245 1.245 19 C -0.006 4.006 20 N -0.476 5.476 21 C 0.156 3.844 22 F -0.144 7.144 23 C 0.065 3.935 24 N -0.302 5.302 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.122 0.878 36 H 0.291 0.709 37 H 0.139 0.861 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 15.518 5.363 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.019 3.981 5 N -0.154 5.154 6 C -0.076 4.076 7 C -0.191 4.191 8 C -0.039 4.039 9 C -0.170 4.170 10 C 0.033 3.967 11 C -0.452 4.452 12 H 0.116 0.884 13 C -0.138 4.138 14 N -0.413 5.413 15 Si 0.730 3.270 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.168 1.168 19 C -0.168 4.168 20 N -0.188 5.188 21 C 0.003 3.997 22 F -0.124 7.124 23 C -0.121 4.121 24 N -0.122 5.122 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.643 16.306 5.826 17.516 hybrid contribution -0.552 -0.674 -0.186 0.891 sum 2.091 15.632 5.640 16.749 Atomic orbital electron populations 1.21820 0.94485 1.02463 1.01697 1.21421 0.96807 0.96144 0.98429 1.21789 1.01100 0.95095 1.02294 1.21773 1.00756 0.75891 0.99678 1.48376 1.43133 1.09192 1.14712 1.22490 0.96988 0.92604 0.95536 1.18778 1.09446 0.93360 0.97477 1.18358 0.92415 0.93544 0.99557 1.21314 1.00775 0.92240 1.02718 1.18571 0.92569 0.94657 0.90895 1.19438 0.96901 0.89232 1.39663 0.88412 1.26190 1.01068 0.94839 0.91679 1.69683 1.39276 1.03234 1.29125 0.86404 0.80818 0.78341 0.81419 1.18780 1.21028 1.16802 1.22260 0.96110 0.92195 1.06199 1.66245 1.37513 1.01562 1.13472 1.17518 0.90393 0.82853 1.08961 1.91395 1.84439 1.42087 1.94472 1.23963 0.96509 0.96063 0.95579 1.77113 1.24629 1.00178 1.10316 0.92687 0.92283 0.92508 0.89623 0.92056 0.92380 0.92425 0.88891 0.90034 0.81168 0.86034 0.89872 0.84384 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.08 37.15 0.34 -1.15 16 2 C -0.11 -1.01 3.00 -90.62 -0.27 -1.28 16 3 C -0.14 -0.98 9.19 37.16 0.34 -0.63 16 4 C 0.14 1.39 5.89 -4.04 -0.02 1.37 16 5 N -0.37 -5.23 3.12 -61.10 -0.19 -5.42 16 6 C 0.07 1.09 10.78 -16.88 -0.18 0.91 16 7 C -0.18 -3.24 5.39 -105.34 -0.57 -3.80 16 8 C -0.03 -0.72 5.77 -104.74 -0.60 -1.33 16 9 C -0.14 -3.18 9.63 -38.29 -0.37 -3.54 16 10 C 0.04 0.92 5.12 -106.70 -0.55 0.37 16 11 C -0.42 -10.56 9.59 -37.77 -0.36 -10.92 16 12 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 13 C 0.08 2.03 5.41 -17.35 -0.09 1.94 16 14 N -0.79 -19.51 13.93 55.54 0.77 -18.74 16 15 Si 0.90 19.60 24.52 -169.99 -4.17 15.44 16 16 H -0.26 -5.56 6.71 56.52 0.38 -5.18 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 19 C -0.01 -0.14 8.37 -16.72 -0.14 -0.28 16 20 N -0.48 -11.71 10.34 -12.59 -0.13 -11.84 16 21 C 0.16 3.60 8.38 -16.74 -0.14 3.45 16 22 F -0.14 -3.13 16.36 2.25 0.04 -3.09 16 23 C 0.07 1.09 11.94 -17.06 -0.20 0.88 16 24 N -0.30 -4.82 12.30 30.80 0.38 -4.44 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.77 7.75 -51.93 -0.40 0.36 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.17 2.36 8.06 -52.48 -0.42 1.93 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 37 H 0.14 3.28 4.70 -52.49 -0.25 3.03 16 38 H 0.18 2.68 8.06 -52.49 -0.42 2.25 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -27.99 326.71 -6.09 -34.07 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.88 Total: 3.12 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.82 Total: -14.02 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.83 Total: -40.44 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.17 Total: 15.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.99 -6.09 -34.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240891415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.568 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds