Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47243 * 2 1 4 4 C 1.53006 * 109.47365 * 239.99846 * 2 1 3 5 5 N 1.46500 * 109.47043 * 295.00324 * 4 2 1 6 6 C 1.34851 * 125.89760 * 124.71102 * 5 4 2 7 7 C 1.36430 * 107.60627 * 179.84043 * 6 5 4 8 8 C 1.48492 * 126.22244 * 180.16194 * 7 6 5 9 9 C 1.38935 * 120.41446 * 130.00598 * 8 7 6 10 10 C 1.40961 * 118.13137 * 179.76808 * 9 8 7 11 11 C 1.41381 * 120.57323 * 180.21722 * 10 9 8 12 12 H 1.08001 * 119.99467 * 330.80718 * 11 10 9 13 13 C 1.39886 * 119.99925 * 150.80856 * 11 10 9 14 14 N 1.30864 * 119.99945 * 161.61347 * 13 11 10 15 15 Si 1.86798 * 120.00211 * 341.61002 * 13 11 10 16 16 H 1.48497 * 109.47274 * 95.40226 * 15 13 11 17 17 H 1.48503 * 109.47516 * 215.39983 * 15 13 11 18 18 H 1.48496 * 109.47120 * 335.39930 * 15 13 11 19 19 C 1.40797 * 118.85587 * 0.48342 * 10 9 8 20 20 N 1.31508 * 120.68011 * 359.77906 * 19 10 9 21 21 C 1.32162 * 122.07105 * 359.97112 * 20 19 10 22 22 F 1.35097 * 119.45766 * 179.97438 * 21 20 19 23 23 C 1.40843 * 107.55745 * 0.42392 * 7 6 5 24 24 N 1.30669 * 108.10416 * 359.73681 * 23 7 6 25 25 H 1.08998 * 109.47470 * 59.99852 * 1 2 3 26 26 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47214 * 300.00243 * 1 2 3 28 28 H 1.09003 * 109.46983 * 119.99625 * 2 1 3 29 29 H 1.09003 * 109.46970 * 60.00250 * 3 2 1 30 30 H 1.09006 * 109.47300 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47272 * 299.99965 * 3 2 1 32 32 H 1.08993 * 109.46524 * 54.99986 * 4 2 1 33 33 H 1.08993 * 109.47200 * 175.00286 * 4 2 1 34 34 H 1.08004 * 126.19507 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.92681 * 359.97438 * 9 8 7 36 36 H 0.97005 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.65849 * 179.75257 * 19 10 9 38 38 H 1.07998 * 125.94672 * 179.74204 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 -2.1329 -1.1906 6 6 0.9540 -2.8008 -2.1311 7 6 0.8061 -4.0867 -1.6998 8 6 0.1043 -5.1788 -2.4207 9 6 0.7200 -6.4109 -2.6025 10 6 0.0079 -7.4148 -3.2894 11 6 0.5834 -8.6891 -3.4993 12 1 1.6554 -8.7901 -3.5838 13 6 -0.2356 -9.8188 -3.5976 14 7 0.2269 -10.9173 -4.1378 15 14 -1.9896 -9.7595 -2.9576 16 1 -2.9138 -9.4401 -4.0752 17 1 -2.3503 -11.0786 -2.3787 18 1 -2.0991 -8.7127 -1.9101 19 6 -1.2842 -7.1250 -3.7679 20 7 -1.8212 -5.9403 -3.5747 21 6 -1.1843 -4.9777 -2.9309 22 9 -1.7860 -3.7798 -2.7628 23 6 1.4349 -4.1884 -0.4437 24 7 1.9378 -3.0198 -0.1454 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 3.1262 -0.6444 -1.2951 34 1 0.5821 -2.3926 -3.0593 35 1 1.7150 -6.5952 -2.2251 36 1 -0.3411 -11.7007 -4.2063 37 1 -1.8398 -7.8834 -4.2995 38 1 1.4917 -5.0775 0.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240891415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = 29.209410 kcal Electronic energy + Delta-G solvation = -22143.918909 eV Core-core repulsion = 18708.173488 eV Total energy + Delta-G solvation = -3435.745421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.44675 -42.17364 -40.25756 -37.41918 -35.84431 -34.09923 -32.92736 -32.57764 -29.98160 -28.09883 -27.22172 -27.12060 -24.59891 -23.29818 -22.33448 -21.59364 -20.68067 -19.57569 -18.70178 -18.08948 -17.62945 -16.94589 -16.57500 -16.50224 -15.77222 -15.50455 -15.25549 -14.98403 -14.82938 -14.52240 -14.19802 -13.97639 -13.93683 -13.79364 -13.61335 -13.17701 -12.95453 -12.84960 -12.77615 -12.66600 -12.16624 -12.01689 -11.93544 -11.91661 -11.54975 -11.31663 -10.68489 -10.35770 -10.30727 -9.80074 -9.02688 -8.97109 -6.61434 0.22754 0.54348 0.95659 1.27478 1.37467 1.45078 1.58425 1.81062 2.05743 2.46927 3.14665 3.29749 3.44605 3.83970 3.87501 3.92700 4.03889 4.12845 4.26687 4.34481 4.36871 4.50875 4.61036 4.62912 4.73564 4.77516 4.86599 4.92346 4.99332 5.01690 5.18153 5.26866 5.31717 5.38961 5.42896 5.48378 5.60854 5.96039 6.08408 6.11833 6.40862 6.58648 6.69049 7.19431 8.03293 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033508 B = 0.003739 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.414842 B = 7486.553472 C = 7920.867979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.139 4.139 4 C 0.128 3.872 5 N -0.360 5.360 6 C 0.083 3.917 7 C -0.216 4.216 8 C -0.018 4.018 9 C -0.146 4.146 10 C 0.032 3.968 11 C -0.448 4.448 12 H 0.079 0.921 13 C 0.060 3.940 14 N -0.819 5.819 15 Si 0.949 3.051 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.264 1.264 19 C -0.022 4.022 20 N -0.495 5.495 21 C 0.151 3.849 22 F -0.137 7.137 23 C 0.060 3.940 24 N -0.311 5.311 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.191 0.809 35 H 0.136 0.864 36 H 0.301 0.699 37 H 0.140 0.860 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 17.825 5.751 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.196 4.196 4 C 0.008 3.992 5 N -0.141 5.141 6 C -0.065 4.065 7 C -0.228 4.228 8 C -0.022 4.022 9 C -0.172 4.172 10 C 0.027 3.973 11 C -0.476 4.476 12 H 0.097 0.903 13 C -0.159 4.159 14 N -0.443 5.443 15 Si 0.773 3.227 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.182 4.182 20 N -0.207 5.207 21 C -0.003 4.003 22 F -0.117 7.117 23 C -0.126 4.126 24 N -0.132 5.132 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.208 0.792 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.796 18.615 6.219 19.825 hybrid contribution -0.536 -1.146 -0.262 1.292 sum 2.260 17.469 5.957 18.595 Atomic orbital electron populations 1.21804 0.95183 1.00527 1.02736 1.21359 0.96075 0.97592 0.97189 1.21744 1.01632 0.93081 1.03176 1.22261 1.02084 0.73632 1.01213 1.48735 1.41561 1.10329 1.13477 1.22739 0.95812 0.91860 0.96045 1.18713 1.11776 0.93704 0.98617 1.18471 0.91570 0.94027 0.98163 1.21535 1.01277 0.92222 1.02120 1.18666 0.92806 0.94810 0.91044 1.19415 0.96199 0.90230 1.41773 0.90292 1.26652 1.03359 0.94411 0.91485 1.69680 1.40661 1.03959 1.29997 0.85732 0.78004 0.78423 0.80564 1.18053 1.19081 1.18842 1.22273 0.96455 0.92408 1.07053 1.66212 1.38256 1.01939 1.14318 1.17819 0.90956 0.82845 1.08691 1.91405 1.84396 1.41509 1.94384 1.24139 0.96316 0.96806 0.95315 1.77093 1.24787 1.00229 1.11124 0.91404 0.95551 0.91827 0.91630 0.91688 0.91514 0.91074 0.86203 0.88452 0.79226 0.84571 0.88752 0.84305 0.78902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.08 71.98 0.65 -1.98 16 2 C -0.10 -1.64 3.00 -10.79 -0.03 -1.67 16 3 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 4 C 0.13 2.12 5.89 86.38 0.51 2.63 16 5 N -0.36 -9.28 3.12 -347.21 -1.08 -10.36 16 6 C 0.08 2.42 10.78 83.81 0.90 3.33 16 7 C -0.22 -7.53 5.39 -20.33 -0.11 -7.64 16 8 C -0.02 -0.74 5.77 -19.94 -0.11 -0.85 16 9 C -0.15 -6.37 9.63 23.10 0.22 -6.15 16 10 C 0.03 1.53 5.12 -21.21 -0.11 1.43 16 11 C -0.45 -22.79 9.59 23.44 0.22 -22.56 16 12 H 0.08 4.21 8.06 -2.91 -0.02 4.18 16 13 C 0.06 2.95 5.41 85.24 0.46 3.41 16 14 N -0.82 -40.75 13.93 21.82 0.30 -40.44 16 15 Si 0.95 40.29 24.52 68.60 1.68 41.98 16 16 H -0.26 -10.47 6.71 99.48 0.67 -9.80 16 17 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 18 H -0.26 -11.98 6.86 99.48 0.68 -11.30 16 19 C -0.02 -1.05 8.37 85.37 0.71 -0.34 16 20 N -0.50 -24.19 10.34 -193.76 -2.00 -26.20 16 21 C 0.15 6.83 8.38 85.08 0.71 7.55 16 22 F -0.14 -5.77 16.36 44.97 0.74 -5.04 16 23 C 0.06 1.93 11.94 85.50 1.02 2.95 16 24 N -0.31 -9.46 12.30 -56.46 -0.69 -10.16 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.03 0.64 7.75 -2.39 -0.02 0.62 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.14 5.46 8.06 -2.91 -0.02 5.44 16 36 H 0.30 13.37 8.30 -92.70 -0.77 12.60 16 37 H 0.14 6.63 4.70 -2.91 -0.01 6.62 16 38 H 0.19 5.51 8.06 -2.91 -0.02 5.49 16 Total: -1.00 -59.87 326.71 5.67 -54.20 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.01 Total: 16.66 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 5.72 Total: -20.65 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.48 Total: -87.16 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.74 Total: -5.04 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.68 Total: 41.98 kcal Total: -59.87 5.67 -54.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240891415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.414 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds