Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47378 * 2 1 4 4 N 1.46497 * 109.47289 * 180.02562 * 3 2 1 5 5 N 1.40073 * 126.13938 * 264.60042 * 4 3 2 6 6 C 1.30896 * 108.51210 * 179.87902 * 5 4 3 7 7 C 1.50693 * 125.70056 * 180.12015 * 6 5 4 8 8 C 1.39496 * 108.59205 * 0.38572 * 6 5 4 9 9 C 1.36295 * 126.13566 * 84.91353 * 4 3 2 10 10 C 1.47955 * 126.34069 * 0.02562 * 9 4 3 11 11 C 1.39175 * 120.44074 * 46.46628 * 10 9 4 12 12 C 1.40914 * 118.11817 * 179.97438 * 11 10 9 13 13 C 1.41380 * 120.56841 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00006 * 201.41049 * 13 12 11 15 15 C 1.39889 * 119.99643 * 21.41300 * 13 12 11 16 16 N 1.30867 * 120.00249 * 17.22350 * 15 13 12 17 17 Si 1.86798 * 119.99961 * 197.21604 * 15 13 12 18 18 H 1.48502 * 109.46715 * 90.00368 * 17 15 13 19 19 H 1.48500 * 109.47273 * 209.99831 * 17 15 13 20 20 H 1.48495 * 109.47532 * 330.00453 * 17 15 13 21 21 C 1.40824 * 118.87043 * 0.02562 * 12 11 10 22 22 N 1.31516 * 120.73183 * 359.97438 * 21 12 11 23 23 C 1.32134 * 122.09878 * 359.72301 * 22 21 12 24 24 F 1.35097 * 119.47684 * 180.29363 * 23 22 21 25 25 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47014 * 299.99314 * 1 2 3 27 27 H 1.08999 * 109.47501 * 60.00074 * 1 2 3 28 28 H 1.09003 * 109.47397 * 240.00122 * 2 1 3 29 29 H 1.09002 * 109.47403 * 120.00432 * 2 1 3 30 30 H 1.08999 * 109.46744 * 300.00390 * 3 2 1 31 31 H 1.09003 * 109.46757 * 59.99730 * 3 2 1 32 32 H 1.09005 * 109.47174 * 270.30853 * 7 6 5 33 33 H 1.08997 * 109.47548 * 30.30754 * 7 6 5 34 34 H 1.09006 * 109.47352 * 150.31037 * 7 6 5 35 35 H 1.08007 * 126.07332 * 179.75582 * 8 6 5 36 36 H 1.08008 * 120.94012 * 0.02562 * 11 10 9 37 37 H 0.96999 * 120.00331 * 179.97438 * 16 15 13 38 38 H 1.07996 * 119.63732 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3316 1.5487 1.1252 6 6 5.5789 1.5089 0.7303 7 6 6.7879 1.5899 1.6262 8 6 5.6018 1.3849 -0.6589 9 6 4.3083 1.3450 -1.0974 10 6 3.8622 1.2207 -2.5026 11 6 2.8619 2.0502 -3.0009 12 6 2.4752 1.8899 -4.3464 13 6 1.4648 2.7051 -4.9062 14 1 0.9328 2.3774 -5.7870 15 6 1.1542 3.9363 -4.3190 16 7 1.9923 4.4917 -3.4813 17 14 -0.4567 4.7875 -4.7308 18 1 -1.5064 4.3487 -3.7764 19 1 -0.2794 6.2584 -4.6296 20 1 -0.8652 4.4321 -6.1135 21 6 3.1125 0.9039 -5.1242 22 7 4.0532 0.1441 -4.6071 23 6 4.4459 0.2694 -3.3517 24 9 5.4214 -0.5356 -2.8768 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 7.0785 2.6331 1.7508 33 1 6.5487 1.1607 2.5991 34 1 7.6112 1.0347 1.1766 35 1 6.4851 1.3302 -1.2780 36 1 2.3957 2.7962 -2.3742 37 1 1.7771 5.3455 -3.0744 38 1 2.8255 0.7702 -6.1567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241764975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = 38.522707 kcal Electronic energy + Delta-G solvation = -23048.021063 eV Core-core repulsion = 19612.679497 eV Total energy + Delta-G solvation = -3435.341566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.62218 -40.66044 -38.31832 -35.26425 -34.34969 -32.60872 -31.41100 -30.47649 -28.71912 -28.04546 -25.66664 -24.97951 -22.83973 -21.95078 -21.49868 -19.91942 -18.97578 -17.51510 -16.72291 -16.31885 -15.95713 -15.18728 -14.98714 -14.78725 -14.54513 -14.04125 -13.53585 -13.36360 -13.22726 -12.82486 -12.60910 -12.40072 -12.29387 -12.21960 -12.01569 -11.80189 -11.76873 -11.64277 -11.43027 -11.32812 -11.08212 -10.81183 -10.60627 -10.28409 -10.16162 -9.63154 -9.14176 -8.60771 -8.28188 -8.04559 -7.56497 -7.14394 -4.76354 1.77236 2.42804 2.62805 2.87125 2.90645 2.91902 2.98637 3.34844 3.63714 4.23148 4.83110 4.95290 5.04880 5.14912 5.16786 5.20647 5.36263 5.53166 5.57489 5.69375 5.81632 5.84256 5.94536 5.98625 6.07086 6.13643 6.19098 6.31996 6.35721 6.40675 6.43462 6.73168 6.76188 6.83975 7.17965 7.27377 7.42836 7.51704 7.62893 8.07215 8.22770 8.32265 8.34283 9.08419 9.75230 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006238 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.282588 B = 4487.611174 C = 5109.865602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.129 3.871 4 N -0.364 5.364 5 N -0.306 5.306 6 C 0.064 3.936 7 C -0.066 4.066 8 C -0.259 4.259 9 C 0.160 3.840 10 C -0.087 4.087 11 C -0.101 4.101 12 C 0.053 3.947 13 C -0.434 4.434 14 H 0.091 0.909 15 C 0.071 3.929 16 N -0.782 5.782 17 Si 0.916 3.084 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.258 1.258 21 C 0.016 3.984 22 N -0.485 5.485 23 C 0.176 3.824 24 F -0.140 7.140 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.289 0.711 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -1.322 6.043 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.008 3.992 4 N -0.146 5.146 5 N -0.129 5.129 6 C -0.101 4.101 7 C -0.125 4.125 8 C -0.288 4.288 9 C 0.033 3.967 10 C -0.092 4.092 11 C -0.127 4.127 12 C 0.048 3.952 13 C -0.463 4.463 14 H 0.109 0.891 15 C -0.149 4.149 16 N -0.406 5.406 17 Si 0.740 3.260 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.145 4.145 22 N -0.197 5.197 23 C 0.022 3.978 24 F -0.120 7.120 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.100 0.900 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.066 -1.652 6.741 7.241 hybrid contribution -0.330 0.961 -0.350 1.075 sum -2.396 -0.691 6.391 6.860 Atomic orbital electron populations 1.21677 0.94488 1.02126 1.02228 1.21884 0.96530 0.96140 1.03076 1.21855 0.74461 0.98332 1.04538 1.48778 1.05788 1.56895 1.03126 1.77110 1.01121 1.26376 1.08299 1.22051 0.93456 1.00547 0.94020 1.20099 0.92461 1.02427 0.97508 1.21207 0.96129 1.17404 0.94082 1.19553 0.90360 0.99097 0.87648 1.18488 1.01423 0.99760 0.89547 1.21840 0.96550 0.98502 0.95853 1.18459 0.92572 0.92760 0.91391 1.19614 1.15045 1.00535 1.11114 0.89138 1.26063 0.98095 0.97256 0.93463 1.69765 1.33211 1.15797 1.21790 0.86147 0.80955 0.78371 0.80555 1.18894 1.19953 1.18117 1.22359 0.95660 0.97686 0.98844 1.66335 1.14909 1.26798 1.11679 1.17404 0.94856 0.95443 0.90125 1.91427 1.60565 1.72615 1.87368 0.92237 0.92628 0.91899 0.91128 0.91578 0.88201 0.89263 0.90986 0.91427 0.90719 0.83933 0.83869 0.90019 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.14 -2.11 6.26 -26.73 -0.17 -2.27 16 3 C 0.13 2.20 6.18 -4.04 -0.02 2.17 16 4 N -0.36 -7.25 3.65 -57.41 -0.21 -7.46 16 5 N -0.31 -6.00 12.56 33.61 0.42 -5.58 16 6 C 0.06 1.17 7.19 -82.53 -0.59 0.58 16 7 C -0.07 -0.87 10.44 36.00 0.38 -0.49 16 8 C -0.26 -5.23 9.90 -39.69 -0.39 -5.62 16 9 C 0.16 3.47 6.29 -82.48 -0.52 2.95 16 10 C -0.09 -2.00 5.61 -104.82 -0.59 -2.59 16 11 C -0.10 -2.38 7.40 -38.22 -0.28 -2.66 16 12 C 0.05 1.25 5.62 -106.71 -0.60 0.66 16 13 C -0.43 -9.88 9.09 -37.77 -0.34 -10.22 16 14 H 0.09 1.93 7.90 -52.49 -0.41 1.51 16 15 C 0.07 1.55 5.20 -17.34 -0.09 1.46 16 16 N -0.78 -17.83 10.76 55.54 0.60 -17.23 16 17 Si 0.92 16.24 29.59 -169.99 -5.03 11.21 16 18 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 21 C 0.02 0.38 10.96 -16.71 -0.18 0.20 16 22 N -0.49 -11.74 10.33 -12.54 -0.13 -11.87 16 23 C 0.18 4.24 8.38 -16.67 -0.14 4.10 16 24 F -0.14 -3.27 16.25 2.25 0.04 -3.23 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.80 5.44 -51.93 -0.28 1.51 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.14 2.74 8.06 -52.48 -0.42 2.31 16 36 H 0.14 3.39 4.60 -52.48 -0.24 3.15 16 37 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 38 H 0.14 2.89 8.06 -52.49 -0.42 2.46 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -26.96 328.51 -7.27 -34.23 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.72 Total: 8.19 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.18 Total: -13.22 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.68 Total: -42.13 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.96 -7.27 -34.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241764975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.749 kcal (2) G-P(sol) polarization free energy of solvation -26.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds