Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47378 * 2 1 4 4 N 1.46497 * 109.47289 * 180.02562 * 3 2 1 5 5 N 1.40073 * 126.13938 * 264.60042 * 4 3 2 6 6 C 1.30896 * 108.51210 * 179.87902 * 5 4 3 7 7 C 1.50693 * 125.70056 * 180.12015 * 6 5 4 8 8 C 1.39496 * 108.59205 * 0.38572 * 6 5 4 9 9 C 1.36295 * 126.13566 * 84.91353 * 4 3 2 10 10 C 1.47955 * 126.34069 * 0.02562 * 9 4 3 11 11 C 1.39175 * 120.44074 * 46.46628 * 10 9 4 12 12 C 1.40914 * 118.11817 * 179.97438 * 11 10 9 13 13 C 1.41380 * 120.56841 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00006 * 201.41049 * 13 12 11 15 15 C 1.39889 * 119.99643 * 21.41300 * 13 12 11 16 16 N 1.30867 * 120.00249 * 17.22350 * 15 13 12 17 17 Si 1.86798 * 119.99961 * 197.21604 * 15 13 12 18 18 H 1.48502 * 109.46715 * 90.00368 * 17 15 13 19 19 H 1.48500 * 109.47273 * 209.99831 * 17 15 13 20 20 H 1.48495 * 109.47532 * 330.00453 * 17 15 13 21 21 C 1.40824 * 118.87043 * 0.02562 * 12 11 10 22 22 N 1.31516 * 120.73183 * 359.97438 * 21 12 11 23 23 C 1.32134 * 122.09878 * 359.72301 * 22 21 12 24 24 F 1.35097 * 119.47684 * 180.29363 * 23 22 21 25 25 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47014 * 299.99314 * 1 2 3 27 27 H 1.08999 * 109.47501 * 60.00074 * 1 2 3 28 28 H 1.09003 * 109.47397 * 240.00122 * 2 1 3 29 29 H 1.09002 * 109.47403 * 120.00432 * 2 1 3 30 30 H 1.08999 * 109.46744 * 300.00390 * 3 2 1 31 31 H 1.09003 * 109.46757 * 59.99730 * 3 2 1 32 32 H 1.09005 * 109.47174 * 270.30853 * 7 6 5 33 33 H 1.08997 * 109.47548 * 30.30754 * 7 6 5 34 34 H 1.09006 * 109.47352 * 150.31037 * 7 6 5 35 35 H 1.08007 * 126.07332 * 179.75582 * 8 6 5 36 36 H 1.08008 * 120.94012 * 0.02562 * 11 10 9 37 37 H 0.96999 * 120.00331 * 179.97438 * 16 15 13 38 38 H 1.07996 * 119.63732 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3316 1.5487 1.1252 6 6 5.5789 1.5089 0.7303 7 6 6.7879 1.5899 1.6262 8 6 5.6018 1.3849 -0.6589 9 6 4.3083 1.3450 -1.0974 10 6 3.8622 1.2207 -2.5026 11 6 2.8619 2.0502 -3.0009 12 6 2.4752 1.8899 -4.3464 13 6 1.4648 2.7051 -4.9062 14 1 0.9328 2.3774 -5.7870 15 6 1.1542 3.9363 -4.3190 16 7 1.9923 4.4917 -3.4813 17 14 -0.4567 4.7875 -4.7308 18 1 -1.5064 4.3487 -3.7764 19 1 -0.2794 6.2584 -4.6296 20 1 -0.8652 4.4321 -6.1135 21 6 3.1125 0.9039 -5.1242 22 7 4.0532 0.1441 -4.6071 23 6 4.4459 0.2694 -3.3517 24 9 5.4214 -0.5356 -2.8768 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 7.0785 2.6331 1.7508 33 1 6.5487 1.1607 2.5991 34 1 7.6112 1.0347 1.1766 35 1 6.4851 1.3302 -1.2780 36 1 2.3957 2.7962 -2.3742 37 1 1.7771 5.3455 -3.0744 38 1 2.8255 0.7702 -6.1567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241764975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = 25.129580 kcal Electronic energy + Delta-G solvation = -23048.601832 eV Core-core repulsion = 19612.679497 eV Total energy + Delta-G solvation = -3435.922336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.45325 -42.17937 -40.09292 -36.58265 -36.09355 -34.13014 -32.86912 -32.24683 -30.09637 -29.48537 -27.44550 -26.25414 -24.54493 -23.72553 -22.79593 -21.48809 -20.47613 -19.20886 -18.53665 -17.92579 -17.66403 -16.80698 -16.57552 -16.29579 -16.03839 -15.52731 -15.11403 -14.76455 -14.51192 -14.23950 -14.15840 -14.02381 -13.86764 -13.67209 -13.47241 -13.20569 -13.14757 -12.95666 -12.89531 -12.79321 -12.34430 -12.28197 -11.90579 -11.83409 -11.66820 -11.29075 -10.80615 -10.42163 -9.92786 -9.67099 -9.26521 -8.83680 -6.55440 0.05003 0.68277 1.02618 1.41327 1.46734 1.53403 1.55799 1.81545 2.14466 2.52152 3.18657 3.41444 3.48420 3.52047 3.80572 3.90873 4.10628 4.20403 4.24158 4.40088 4.44334 4.56940 4.59744 4.71622 4.75336 4.84462 4.89057 4.97607 5.00329 5.04598 5.06761 5.09404 5.24392 5.25440 5.48536 5.63808 5.76762 5.82308 5.98886 6.29934 6.53210 6.58430 6.72932 7.25946 8.08461 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006238 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.282588 B = 4487.611174 C = 5109.865602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.125 3.875 4 N -0.368 5.368 5 N -0.317 5.317 6 C 0.067 3.933 7 C -0.064 4.064 8 C -0.270 4.270 9 C 0.132 3.868 10 C -0.080 4.080 11 C -0.113 4.113 12 C 0.035 3.965 13 C -0.446 4.446 14 H 0.103 0.897 15 C 0.038 3.962 16 N -0.807 5.807 17 Si 0.988 3.012 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.251 1.251 21 C 0.006 3.994 22 N -0.496 5.496 23 C 0.146 3.854 24 F -0.142 7.142 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.297 0.703 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -0.458 6.843 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.004 3.996 4 N -0.150 5.150 5 N -0.140 5.140 6 C -0.098 4.098 7 C -0.122 4.122 8 C -0.299 4.299 9 C 0.005 3.995 10 C -0.085 4.085 11 C -0.139 4.139 12 C 0.030 3.970 13 C -0.474 4.474 14 H 0.121 0.879 15 C -0.181 4.181 16 N -0.431 5.431 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.174 1.174 21 C -0.157 4.157 22 N -0.208 5.208 23 C -0.007 4.007 24 F -0.122 7.122 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.108 0.892 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.201 -0.806 7.551 8.241 hybrid contribution 0.042 0.761 -0.593 0.965 sum -3.159 -0.045 6.958 7.642 Atomic orbital electron populations 1.21654 0.92017 1.03301 1.02876 1.21802 0.98555 0.94656 1.01675 1.22039 0.73343 0.99474 1.04710 1.49010 1.06620 1.56679 1.02700 1.77080 1.01747 1.26845 1.08303 1.22786 0.94458 0.98746 0.93822 1.20294 0.90686 1.04046 0.97215 1.21458 0.95775 1.17340 0.95366 1.19610 0.91505 1.00878 0.87554 1.18552 1.00714 0.98892 0.90360 1.21803 0.97265 0.98909 0.95939 1.18778 0.93121 0.93340 0.91749 1.19983 1.14827 1.00934 1.11694 0.87882 1.26930 1.01008 0.97404 0.92739 1.69814 1.34882 1.16372 1.21994 0.85072 0.76430 0.77083 0.80630 1.18164 1.19646 1.17374 1.22697 0.95601 0.97635 0.99757 1.66318 1.15344 1.27193 1.11967 1.17564 0.95968 0.96594 0.90611 1.91399 1.60653 1.72707 1.87412 0.90829 0.90560 0.92605 0.94028 0.91328 0.89669 0.87249 0.89230 0.89971 0.88904 0.83666 0.84380 0.89197 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.13 -3.93 6.26 30.59 0.19 -3.74 16 3 C 0.12 4.26 6.18 86.38 0.53 4.79 16 4 N -0.37 -14.79 3.65 -335.56 -1.23 -16.01 16 5 N -0.32 -12.19 12.56 -47.59 -0.60 -12.79 16 6 C 0.07 2.37 7.19 43.00 0.31 2.68 16 7 C -0.06 -1.52 10.44 71.23 0.74 -0.78 16 8 C -0.27 -10.99 9.90 22.20 0.22 -10.77 16 9 C 0.13 5.84 6.29 40.65 0.26 6.10 16 10 C -0.08 -3.81 5.61 -19.99 -0.11 -3.92 16 11 C -0.11 -5.47 7.40 23.15 0.17 -5.30 16 12 C 0.04 1.69 5.62 -21.22 -0.12 1.57 16 13 C -0.45 -20.14 9.09 23.44 0.21 -19.93 16 14 H 0.10 4.28 7.90 -2.91 -0.02 4.25 16 15 C 0.04 1.59 5.20 85.24 0.44 2.04 16 16 N -0.81 -36.60 10.76 21.82 0.23 -36.37 16 17 Si 0.99 31.82 29.59 68.60 2.03 33.85 16 18 H -0.26 -8.00 7.11 99.48 0.71 -7.29 16 19 H -0.27 -8.60 7.11 99.48 0.71 -7.89 16 20 H -0.25 -7.77 7.11 99.48 0.71 -7.06 16 21 C 0.01 0.26 10.96 85.37 0.94 1.20 16 22 N -0.50 -24.62 10.33 -193.59 -2.00 -26.62 16 23 C 0.15 7.27 8.38 85.13 0.71 7.99 16 24 F -0.14 -6.84 16.25 44.97 0.73 -6.11 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 3.15 5.44 -2.39 -0.01 3.14 16 31 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.86 16 35 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 36 H 0.14 6.74 4.60 -2.91 -0.01 6.73 16 37 H 0.30 12.19 8.30 -92.71 -0.77 11.42 16 38 H 0.16 6.64 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -58.20 328.51 5.46 -52.74 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 1.08 Total: 31.99 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.21 Total: -20.68 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -3.59 Total: -91.79 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.73 Total: -6.11 kcal Atomic # 14 Polarization: 31.82 SS G_CDS: 2.03 Total: 33.85 kcal Total: -58.20 5.46 -52.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241764975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.868 kcal (2) G-P(sol) polarization free energy of solvation -58.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds