Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47836 * 119.99932 * 2 1 4 4 C 1.39638 * 120.07888 * 359.72942 * 3 2 1 5 5 C 1.38045 * 120.11823 * 179.71353 * 4 3 2 6 6 C 1.38125 * 120.28226 * 0.56245 * 5 4 3 7 7 C 1.39501 * 120.15200 * 359.71392 * 6 5 4 8 8 C 1.48214 * 120.05828 * 179.97438 * 7 6 5 9 9 C 1.39155 * 120.27564 * 123.42559 * 8 7 6 10 10 C 1.38331 * 120.10086 * 180.02562 * 9 8 7 11 11 C 1.38038 * 120.77448 * 359.97438 * 10 9 8 12 12 C 1.39119 * 120.23676 * 359.97356 * 11 10 9 13 13 N 1.38178 * 132.74458 * 180.02562 * 12 11 10 14 14 H 0.97001 * 124.70348 * 359.97438 * 13 12 11 15 15 C 1.35598 * 110.59391 * 179.97438 * 13 12 11 16 16 C 1.38982 * 109.24947 * 0.02562 * 15 13 12 17 17 C 1.40965 * 126.92978 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99766 * 158.24889 * 17 16 15 19 19 C 1.39684 * 119.99962 * 338.25241 * 17 16 15 20 20 N 1.31073 * 120.00019 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47022 * 59.99921 * 21 19 17 23 23 H 1.48501 * 109.47204 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47061 * 300.00199 * 21 19 17 25 25 C 1.40191 * 120.28231 * 303.15114 * 8 7 6 26 26 C 1.39212 * 119.87700 * 0.02562 * 7 6 5 27 27 H 1.07997 * 120.00459 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99913 * 359.72053 * 1 2 3 29 29 H 1.07994 * 119.99862 * 180.02562 * 2 1 3 30 30 H 1.08000 * 119.93924 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.86055 * 180.25339 * 5 4 3 32 32 H 1.07996 * 119.92440 * 179.74007 * 6 5 4 33 33 H 1.07996 * 119.95511 * 359.97438 * 9 8 7 34 34 H 1.08003 * 119.61190 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.88185 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.37582 * 179.97438 * 15 13 12 37 37 H 0.97009 * 120.00099 * 179.97438 * 20 19 17 38 38 H 1.08005 * 120.13865 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2803 0.0000 4 6 1.3682 2.4906 -0.0057 5 6 2.0576 3.6865 0.0003 6 6 3.4388 3.6944 0.0002 7 6 4.1463 2.4921 0.0001 8 6 5.6284 2.5029 -0.0006 9 6 6.3352 1.8462 1.0022 10 6 7.7185 1.8591 0.9984 11 6 8.4159 2.5185 0.0063 12 6 7.7327 3.1816 -1.0080 13 7 8.1560 3.9075 -2.1049 14 1 9.0843 4.0674 -2.3365 15 6 7.0939 4.3652 -2.8128 16 6 5.9193 3.9505 -2.1962 17 6 4.6012 4.2176 -2.6184 18 1 3.7907 3.5823 -2.2929 19 6 4.3433 5.3040 -3.4578 20 7 5.3269 6.0752 -3.8524 21 14 2.5967 5.6576 -4.0178 22 1 1.7380 5.9083 -2.8325 23 1 2.5913 6.8552 -4.8959 24 1 2.0724 4.4900 -4.7708 25 6 6.3300 3.1699 -1.0146 26 6 3.4577 1.2822 -0.0005 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0046 29 1 1.8655 -0.9353 -0.0004 30 1 0.2882 2.4909 -0.0105 31 1 1.5146 4.6202 0.0000 32 1 3.9722 4.6334 0.0006 33 1 5.8031 1.3264 1.7852 34 1 8.2591 1.3472 1.7808 35 1 9.4959 2.5189 0.0172 36 1 7.1515 4.9590 -3.7130 37 1 5.1479 6.8295 -4.4357 38 1 4.0012 0.3489 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241961836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = 90.065887 kcal Electronic energy + Delta-G solvation = -21847.555226 eV Core-core repulsion = 18812.925214 eV Total energy + Delta-G solvation = -3034.630012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88062 -38.58723 -35.84186 -34.12900 -33.27302 -31.62141 -29.96785 -28.78014 -28.09855 -27.47252 -24.70634 -23.14609 -22.28481 -21.11731 -20.43954 -19.61617 -18.94094 -17.00489 -16.19542 -15.73642 -15.35332 -15.12458 -14.60294 -14.33990 -14.10943 -13.44234 -13.24429 -13.12669 -12.80239 -12.70705 -12.50359 -12.26615 -11.61557 -11.34998 -11.26996 -11.13207 -10.99339 -10.79817 -10.68310 -10.35560 -10.32039 -10.12745 -9.68271 -9.64042 -9.18379 -8.57824 -8.02448 -7.67159 -7.09464 -6.46852 -6.46268 -3.97129 1.38469 1.73085 2.28416 2.59400 2.94734 3.13667 3.18460 3.23643 4.10712 4.22269 4.42553 4.51074 4.78380 5.04301 5.15023 5.38211 5.50634 5.54624 5.66379 5.69765 5.81713 5.93262 6.00992 6.07279 6.12482 6.40818 6.44902 6.48304 6.61871 6.67487 6.71549 6.81746 7.04544 7.13261 7.15608 7.17407 7.23719 7.35693 7.49542 7.56058 7.67838 7.75021 8.03936 8.33388 8.67866 9.00552 9.14886 9.20246 10.55651 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.008313 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.394701 B = 3367.604922 C = 5578.191169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.083 4.083 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.057 4.057 7 C -0.024 4.024 8 C 0.002 3.998 9 C -0.171 4.171 10 C -0.117 4.117 11 C -0.148 4.148 12 C 0.084 3.916 13 N -0.592 5.592 14 H 0.394 0.606 15 C -0.077 4.077 16 C 0.026 3.974 17 C -0.421 4.421 18 H 0.078 0.922 19 C 0.062 3.938 20 N -0.837 5.837 21 Si 0.902 3.098 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.111 4.111 26 C -0.095 4.095 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.175 0.825 37 H 0.271 0.729 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -6.027 6.157 9.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.116 4.116 3 C -0.083 4.083 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.024 4.024 8 C 0.001 3.999 9 C -0.191 4.191 10 C -0.136 4.136 11 C -0.170 4.170 12 C -0.026 4.026 13 N -0.193 5.193 14 H 0.228 0.772 15 C -0.201 4.201 16 C 0.020 3.980 17 C -0.454 4.454 18 H 0.096 0.904 19 C -0.148 4.148 20 N -0.468 5.468 21 Si 0.728 3.272 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.118 4.118 26 C -0.113 4.113 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.192 0.808 37 H 0.082 0.918 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.619 -5.735 5.885 8.624 hybrid contribution -0.263 0.423 -0.569 0.756 sum -2.882 -5.311 5.317 8.049 Atomic orbital electron populations 1.24213 0.95734 1.01723 1.02184 1.21812 0.95070 0.95907 0.98851 1.18854 0.93080 0.92761 1.03567 1.21155 0.99082 0.91988 1.01304 1.20939 0.94455 0.97499 1.01826 1.21335 0.93459 0.98147 0.94587 1.18707 0.92386 0.92747 0.98565 1.18051 0.90404 0.97207 0.94236 1.20578 0.93685 1.04805 1.00056 1.20313 0.93804 1.01259 0.98273 1.19847 0.97767 1.03447 0.95943 1.18139 0.93841 0.99173 0.91488 1.41452 1.07998 1.46979 1.22853 0.77245 1.22701 0.84292 1.11599 1.01459 1.17983 0.93042 0.96374 0.90560 1.18777 0.92650 1.09600 1.24421 0.90428 1.25575 0.98156 0.95506 0.95573 1.69683 1.32356 1.14917 1.29865 0.86438 0.83430 0.78094 0.79218 1.19176 1.20890 1.19447 1.19440 0.91529 1.03428 0.97367 1.21251 0.92726 0.97311 1.00004 0.88363 0.88243 0.86883 0.86655 0.86466 0.85377 0.87490 0.87382 0.88105 0.80816 0.91821 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 14.15 28.82 0.41 -1.97 16 2 C -0.10 -1.34 9.91 -37.56 -0.37 -1.71 16 3 C -0.08 -1.37 5.86 -105.05 -0.62 -1.98 16 4 C -0.12 -1.93 9.40 -39.13 -0.37 -2.30 16 5 C -0.13 -2.30 10.02 -39.69 -0.40 -2.70 16 6 C -0.06 -1.15 6.70 -39.15 -0.26 -1.42 16 7 C -0.02 -0.48 4.60 -104.97 -0.48 -0.97 16 8 C 0.00 0.03 5.40 -104.72 -0.57 -0.53 16 9 C -0.17 -3.21 9.62 -39.21 -0.38 -3.58 16 10 C -0.12 -2.06 10.00 -39.62 -0.40 -2.46 16 11 C -0.15 -2.78 10.06 -39.33 -0.40 -3.18 16 12 C 0.08 1.85 7.23 -83.91 -0.61 1.24 16 13 N -0.59 -12.60 5.99 -9.81 -0.06 -12.66 16 14 H 0.39 6.85 8.96 -40.82 -0.37 6.48 16 15 C -0.08 -1.90 10.77 -15.61 -0.17 -2.06 16 16 C 0.03 0.67 5.96 -104.83 -0.62 0.04 16 17 C -0.42 -11.09 7.56 -38.01 -0.29 -11.37 16 18 H 0.08 2.03 5.57 -52.49 -0.29 1.74 16 19 C 0.06 1.59 5.47 -17.34 -0.09 1.49 16 20 N -0.84 -21.78 10.80 55.54 0.60 -21.18 16 21 Si 0.90 19.78 29.56 -169.99 -5.02 14.75 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 C -0.11 -2.65 6.07 -104.64 -0.64 -3.28 16 26 C -0.09 -1.71 9.36 -38.83 -0.36 -2.08 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.10 1.14 6.03 -52.49 -0.32 0.82 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.59 6.15 -52.49 -0.32 1.27 16 31 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.13 2.76 7.82 -52.49 -0.41 2.35 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.18 4.43 6.37 -52.49 -0.33 4.10 16 37 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 38 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -28.10 321.43 -10.38 -38.49 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -4.14 Total: 14.58 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -6.61 Total: -38.83 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.54 Total: -33.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.10 -10.38 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241961836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.553 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds