Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47836 * 119.99932 * 2 1 4 4 C 1.39638 * 120.07888 * 359.72942 * 3 2 1 5 5 C 1.38045 * 120.11823 * 179.71353 * 4 3 2 6 6 C 1.38125 * 120.28226 * 0.56245 * 5 4 3 7 7 C 1.39501 * 120.15200 * 359.71392 * 6 5 4 8 8 C 1.48214 * 120.05828 * 179.97438 * 7 6 5 9 9 C 1.39155 * 120.27564 * 123.42559 * 8 7 6 10 10 C 1.38331 * 120.10086 * 180.02562 * 9 8 7 11 11 C 1.38038 * 120.77448 * 359.97438 * 10 9 8 12 12 C 1.39119 * 120.23676 * 359.97356 * 11 10 9 13 13 N 1.38178 * 132.74458 * 180.02562 * 12 11 10 14 14 H 0.97001 * 124.70348 * 359.97438 * 13 12 11 15 15 C 1.35598 * 110.59391 * 179.97438 * 13 12 11 16 16 C 1.38982 * 109.24947 * 0.02562 * 15 13 12 17 17 C 1.40965 * 126.92978 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99766 * 158.24889 * 17 16 15 19 19 C 1.39684 * 119.99962 * 338.25241 * 17 16 15 20 20 N 1.31073 * 120.00019 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47022 * 59.99921 * 21 19 17 23 23 H 1.48501 * 109.47204 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47061 * 300.00199 * 21 19 17 25 25 C 1.40191 * 120.28231 * 303.15114 * 8 7 6 26 26 C 1.39212 * 119.87700 * 0.02562 * 7 6 5 27 27 H 1.07997 * 120.00459 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99913 * 359.72053 * 1 2 3 29 29 H 1.07994 * 119.99862 * 180.02562 * 2 1 3 30 30 H 1.08000 * 119.93924 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.86055 * 180.25339 * 5 4 3 32 32 H 1.07996 * 119.92440 * 179.74007 * 6 5 4 33 33 H 1.07996 * 119.95511 * 359.97438 * 9 8 7 34 34 H 1.08003 * 119.61190 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.88185 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.37582 * 179.97438 * 15 13 12 37 37 H 0.97009 * 120.00099 * 179.97438 * 20 19 17 38 38 H 1.08005 * 120.13865 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2803 0.0000 4 6 1.3682 2.4906 -0.0057 5 6 2.0576 3.6865 0.0003 6 6 3.4388 3.6944 0.0002 7 6 4.1463 2.4921 0.0001 8 6 5.6284 2.5029 -0.0006 9 6 6.3352 1.8462 1.0022 10 6 7.7185 1.8591 0.9984 11 6 8.4159 2.5185 0.0063 12 6 7.7327 3.1816 -1.0080 13 7 8.1560 3.9075 -2.1049 14 1 9.0843 4.0674 -2.3365 15 6 7.0939 4.3652 -2.8128 16 6 5.9193 3.9505 -2.1962 17 6 4.6012 4.2176 -2.6184 18 1 3.7907 3.5823 -2.2929 19 6 4.3433 5.3040 -3.4578 20 7 5.3269 6.0752 -3.8524 21 14 2.5967 5.6576 -4.0178 22 1 1.7380 5.9083 -2.8325 23 1 2.5913 6.8552 -4.8959 24 1 2.0724 4.4900 -4.7708 25 6 6.3300 3.1699 -1.0146 26 6 3.4577 1.2822 -0.0005 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0046 29 1 1.8655 -0.9353 -0.0004 30 1 0.2882 2.4909 -0.0105 31 1 1.5146 4.6202 0.0000 32 1 3.9722 4.6334 0.0006 33 1 5.8031 1.3264 1.7852 34 1 8.2591 1.3472 1.7808 35 1 9.4959 2.5189 0.0172 36 1 7.1515 4.9590 -3.7130 37 1 5.1479 6.8295 -4.4357 38 1 4.0012 0.3489 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241961836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = 77.778171 kcal Electronic energy + Delta-G solvation = -21848.088061 eV Core-core repulsion = 18812.925214 eV Total energy + Delta-G solvation = -3035.162848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51054 -39.97669 -37.39778 -35.60384 -34.86262 -33.08676 -31.53384 -30.19464 -29.66403 -29.08704 -26.54090 -24.51537 -23.64408 -22.58166 -22.02156 -21.34327 -20.30633 -18.50152 -17.80542 -17.38692 -16.97990 -16.38270 -16.17428 -15.94137 -15.51133 -14.87871 -14.77209 -14.68378 -14.31778 -14.19062 -13.89913 -13.65884 -13.14930 -13.08689 -12.91116 -12.59784 -12.47690 -12.38103 -12.12690 -11.89126 -11.81152 -11.64903 -11.32334 -11.10897 -10.93868 -10.14703 -9.52578 -8.98947 -8.73640 -8.36540 -8.20407 -5.91151 0.08396 0.31242 0.79900 1.02965 1.37563 1.38738 1.47936 1.78612 2.27681 2.36694 2.86872 3.02801 3.21248 3.62693 3.83316 3.98754 4.08517 4.23330 4.32215 4.45879 4.48300 4.58381 4.64258 4.67343 4.81874 4.95099 5.02916 5.13042 5.20386 5.30185 5.37352 5.42149 5.50595 5.58472 5.65799 5.73976 5.79218 5.85887 5.96695 5.99098 6.08241 6.22006 6.29004 6.57759 6.83223 7.19821 7.25258 7.40062 8.66633 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.008313 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.394701 B = 3367.604922 C = 5578.191169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.129 4.129 3 C -0.076 4.076 4 C -0.122 4.122 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.041 4.041 8 C -0.018 4.018 9 C -0.166 4.166 10 C -0.104 4.104 11 C -0.150 4.150 12 C 0.073 3.927 13 N -0.587 5.587 14 H 0.411 0.589 15 C -0.090 4.090 16 C -0.011 4.011 17 C -0.438 4.438 18 H 0.069 0.931 19 C 0.020 3.980 20 N -0.865 5.865 21 Si 0.958 3.042 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.150 4.150 26 C -0.107 4.107 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.160 0.840 37 H 0.273 0.727 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -8.274 7.809 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.101 4.101 7 C -0.041 4.041 8 C -0.018 4.018 9 C -0.186 4.186 10 C -0.123 4.123 11 C -0.171 4.171 12 C -0.038 4.038 13 N -0.191 5.191 14 H 0.247 0.753 15 C -0.215 4.215 16 C -0.017 4.017 17 C -0.472 4.472 18 H 0.087 0.913 19 C -0.187 4.187 20 N -0.497 5.497 21 Si 0.782 3.218 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.195 1.195 25 C -0.156 4.156 26 C -0.125 4.125 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.153 0.847 36 H 0.177 0.823 37 H 0.083 0.917 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.752 -7.990 7.552 11.617 hybrid contribution 0.077 0.963 -0.925 1.338 sum -3.675 -7.027 6.627 10.334 Atomic orbital electron populations 1.24560 0.95068 1.03348 0.97872 1.21866 0.95844 0.94997 1.01938 1.19239 0.92740 0.94359 1.01222 1.21490 1.00604 0.91272 1.00560 1.21133 0.93619 0.98992 1.01380 1.21140 0.94526 0.97060 0.97392 1.18802 0.92148 0.93553 0.99636 1.18396 0.91446 0.97510 0.94462 1.20983 0.94594 1.03624 0.99431 1.20871 0.93465 0.99606 0.98355 1.20281 0.99630 1.02360 0.94842 1.18581 0.93623 0.99418 0.92129 1.41260 1.08152 1.47005 1.22635 0.75298 1.22456 0.85391 1.12025 1.01599 1.18364 0.93447 0.97749 0.92101 1.18883 0.92869 1.10171 1.25244 0.91262 1.26282 1.01644 0.95230 0.95571 1.69775 1.33859 1.15421 1.30684 0.85572 0.79331 0.77940 0.78966 1.18338 1.20048 1.19497 1.19709 0.93028 1.04874 0.98011 1.21408 0.93706 0.96829 1.00592 0.85568 0.87759 0.85424 0.83601 0.85206 0.88566 0.84961 0.82858 0.84668 0.82297 0.91656 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 14.15 66.67 0.94 -2.38 16 2 C -0.13 -3.12 9.91 23.66 0.23 -2.88 16 3 C -0.08 -2.39 5.86 -20.14 -0.12 -2.51 16 4 C -0.12 -3.81 9.40 22.56 0.21 -3.60 16 5 C -0.13 -4.80 10.02 22.20 0.22 -4.58 16 6 C -0.08 -3.51 6.70 22.55 0.15 -3.36 16 7 C -0.04 -1.72 4.60 -20.09 -0.09 -1.81 16 8 C -0.02 -0.77 5.40 -19.93 -0.11 -0.88 16 9 C -0.17 -5.95 9.62 22.51 0.22 -5.73 16 10 C -0.10 -3.31 10.00 22.24 0.22 -3.09 16 11 C -0.15 -5.27 10.06 22.43 0.23 -5.05 16 12 C 0.07 3.21 7.23 38.85 0.28 3.49 16 13 N -0.59 -25.72 5.99 -184.95 -1.11 -26.82 16 14 H 0.41 14.49 8.96 -92.71 -0.83 13.66 16 15 C -0.09 -4.71 10.77 84.29 0.91 -3.81 16 16 C -0.01 -0.61 5.96 -20.00 -0.12 -0.73 16 17 C -0.44 -24.42 7.56 23.29 0.18 -24.24 16 18 H 0.07 3.85 5.57 -2.91 -0.02 3.83 16 19 C 0.02 1.04 5.47 85.16 0.47 1.51 16 20 N -0.87 -47.34 10.80 21.79 0.24 -47.10 16 21 Si 0.96 41.76 29.56 68.60 2.03 43.79 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.15 -7.43 6.07 -19.88 -0.12 -7.55 16 26 C -0.11 -3.84 9.36 22.76 0.21 -3.63 16 27 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 28 H 0.10 1.91 6.03 -2.91 -0.02 1.90 16 29 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.15 3.58 6.15 -2.91 -0.02 3.56 16 31 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.10 4.56 7.82 -2.91 -0.02 4.53 16 33 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.16 8.69 6.37 -2.91 -0.02 8.67 16 37 H 0.27 13.94 8.30 -92.70 -0.77 13.17 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -64.86 321.43 5.33 -59.53 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.26 Total: 41.43 kcal Atomic # 6 Polarization: -74.73 SS G_CDS: 3.91 Total: -70.82 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -0.87 Total: -73.92 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -64.86 5.33 -59.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241961836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.305 kcal (2) G-P(sol) polarization free energy of solvation -64.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds