Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99776 * 2 1 4 4 N 1.34773 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46992 * 121.32354 * 0.02663 * 4 2 1 6 6 C 1.50339 * 109.18508 * 223.13247 * 5 4 2 7 7 C 1.31719 * 123.35986 * 349.38599 * 6 5 4 8 8 C 1.47159 * 117.84927 * 180.57328 * 7 6 5 9 9 C 1.39439 * 120.61798 * 104.73496 * 8 7 6 10 10 C 1.38198 * 119.89261 * 180.29774 * 9 8 7 11 11 F 1.35094 * 119.38026 * 179.72534 * 10 9 8 12 12 C 1.39095 * 121.23084 * 359.43491 * 10 9 8 13 13 C 1.36233 * 121.30868 * 0.57015 * 12 10 9 14 14 C 1.40909 * 119.98866 * 359.72273 * 13 12 10 15 15 C 1.40707 * 120.59467 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99620 * 155.04768 * 15 14 13 17 17 C 1.40078 * 120.00032 * 335.04875 * 15 14 13 18 18 N 1.30785 * 119.99754 * 342.67072 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 162.66698 * 17 15 14 20 20 H 1.48502 * 109.46887 * 94.66736 * 19 17 15 21 21 H 1.48494 * 109.47286 * 214.66617 * 19 17 15 22 22 H 1.48501 * 109.47115 * 334.66806 * 19 17 15 23 23 C 1.49998 * 124.29642 * 0.28777 * 7 6 5 24 24 C 1.47303 * 121.32058 * 180.02562 * 4 2 1 25 25 H 1.09002 * 109.47493 * 270.00603 * 1 2 3 26 26 H 1.09001 * 109.47013 * 30.00586 * 1 2 3 27 27 H 1.08998 * 109.47412 * 150.00378 * 1 2 3 28 28 H 1.08998 * 109.51954 * 343.23593 * 5 4 2 29 29 H 1.09002 * 109.51997 * 103.42698 * 5 4 2 30 30 H 1.08005 * 118.32116 * 169.13017 * 6 5 4 31 31 H 1.07995 * 120.05967 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.34628 * 180.27307 * 12 10 9 33 33 H 1.08002 * 120.00759 * 179.69515 * 13 12 10 34 34 H 0.96997 * 119.99931 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.31336 * 101.56484 * 23 7 6 36 36 H 1.08996 * 109.30871 * 221.17841 * 23 7 6 37 37 H 1.08994 * 109.76041 * 357.96434 * 24 4 2 38 38 H 1.09001 * 109.75977 * 237.20400 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4755 -2.4568 0.0005 6 6 2.1471 -3.3873 0.9718 7 6 3.3098 -3.1305 1.5349 8 6 3.8625 -4.1335 2.4591 9 6 4.9165 -4.9572 2.0656 10 6 5.4200 -5.8983 2.9435 11 9 6.4377 -6.6946 2.5496 12 6 4.9024 -6.0367 4.2272 13 6 3.8729 -5.2583 4.6631 14 6 3.3151 -4.2855 3.8099 15 6 2.2511 -3.4750 4.2468 16 1 2.0902 -2.5065 3.7970 17 6 1.4008 -3.9243 5.2652 18 7 1.3670 -5.1943 5.5761 19 14 0.3153 -2.7098 6.1794 20 1 -1.0287 -2.6750 5.5487 21 1 0.1859 -3.1313 7.5973 22 1 0.9257 -1.3573 6.1188 23 6 4.1103 -1.8856 1.2914 24 6 3.6535 -1.2011 0.0011 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 0.4376 -2.3042 0.2964 29 1 1.5104 -2.8910 -0.9987 30 1 1.6488 -4.3118 1.2237 31 1 5.3360 -4.8629 1.0749 32 1 5.3219 -6.7794 4.8898 33 1 3.4840 -5.3871 5.6625 34 1 0.7785 -5.5054 6.2815 35 1 3.9765 -1.2013 2.1292 36 1 5.1649 -2.1466 1.2040 37 1 4.0455 -0.1848 -0.0354 38 1 4.0094 -1.7653 -0.8610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241968028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -54.706514 kcal Electronic energy + Delta-G solvation = -22727.728515 eV Core-core repulsion = 19256.051476 eV Total energy + Delta-G solvation = -3471.677040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.47798 -39.89743 -37.85833 -36.52118 -33.84260 -33.13725 -31.29793 -29.64930 -29.46624 -28.74025 -25.67420 -24.51113 -23.15935 -21.20114 -20.91595 -19.72136 -17.53696 -17.33101 -16.99603 -15.88488 -15.59827 -15.45132 -15.14948 -14.69472 -14.23899 -14.19516 -13.88691 -13.59446 -13.37853 -13.11089 -12.78829 -12.71714 -12.36743 -12.16821 -12.02398 -11.93414 -11.63691 -11.35041 -11.20950 -11.10471 -10.91241 -10.63084 -10.32713 -10.11744 -9.72149 -9.55036 -9.32631 -8.50366 -8.17707 -7.64650 -7.37507 -7.00529 -4.52116 2.40819 2.64152 2.75009 2.92258 2.94292 2.96992 3.04212 3.16058 3.74316 4.34959 4.70087 5.13800 5.19785 5.26536 5.38618 5.39968 5.41501 5.52599 5.65643 5.67117 5.81089 5.88715 5.99554 6.02034 6.03413 6.17634 6.37380 6.45294 6.66006 6.80408 6.95226 7.02836 7.05470 7.30945 7.54723 7.59705 7.66818 7.76702 7.84993 8.01950 8.28360 8.37001 8.59485 8.72470 9.89879 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.006864 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.913862 B = 4078.351076 C = 6017.244805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.516 3.484 3 O -0.558 6.558 4 N -0.610 5.610 5 C 0.147 3.853 6 C -0.194 4.194 7 C -0.009 4.009 8 C -0.179 4.179 9 C -0.095 4.095 10 C -0.058 4.058 11 F -0.177 7.177 12 C -0.118 4.118 13 C -0.153 4.153 14 C 0.124 3.876 15 C -0.433 4.433 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.779 5.779 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.098 4.098 24 C 0.112 3.888 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.285 0.715 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 3.939 -6.490 8.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.437 6.437 4 N -0.344 5.344 5 C 0.025 3.975 6 C -0.212 4.212 7 C -0.009 4.009 8 C -0.181 4.181 9 C -0.114 4.114 10 C -0.078 4.078 11 F -0.156 7.156 12 C -0.137 4.137 13 C -0.172 4.172 14 C 0.121 3.879 15 C -0.461 4.461 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.402 5.402 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.135 4.135 24 C -0.010 4.010 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.196 4.291 -6.344 8.299 hybrid contribution -0.395 -0.041 0.586 0.708 sum -3.591 4.250 -5.758 8.007 Atomic orbital electron populations 1.21945 0.92059 1.04496 1.04940 1.20708 0.90554 0.82902 0.75332 1.90678 1.70812 1.31089 1.51127 1.48258 1.07310 1.06115 1.72688 1.20587 0.96217 0.82011 0.98708 1.22552 0.97284 1.00787 1.00605 1.19143 0.94179 0.93325 0.94302 1.19537 1.02399 1.02130 0.94031 1.20462 0.97191 0.96276 0.97451 1.17052 0.95035 0.99553 0.96164 1.91275 1.58938 1.73702 1.91732 1.20372 0.98573 1.00679 0.94065 1.20852 0.96571 0.99269 1.00490 1.18640 0.90487 0.90492 0.88283 1.19485 1.08857 1.03065 1.14653 0.89903 1.26020 0.97215 0.95415 0.95848 1.69788 1.31239 1.14657 1.24551 0.86291 0.80007 0.81599 0.79017 1.19265 1.19789 1.18162 1.20791 0.99751 0.95600 0.97389 1.21669 0.79454 1.02044 0.97830 0.88706 0.89235 0.89965 0.89283 0.91109 0.86173 0.88178 0.88519 0.85654 0.90357 0.90413 0.90185 0.89158 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.40 36.00 0.34 -1.51 16 2 C 0.52 7.72 7.83 -10.99 -0.09 7.64 16 3 O -0.56 -10.38 16.58 5.55 0.09 -10.29 16 4 N -0.61 -8.85 2.96 -174.20 -0.52 -9.37 16 5 C 0.15 1.92 6.26 -5.10 -0.03 1.89 16 6 C -0.19 -3.28 9.37 -36.36 -0.34 -3.63 16 7 C -0.01 -0.17 4.28 -103.22 -0.44 -0.61 16 8 C -0.18 -3.95 5.20 -102.49 -0.53 -4.48 16 9 C -0.09 -2.08 9.76 -39.15 -0.38 -2.46 16 10 C -0.06 -1.35 7.28 -39.28 -0.29 -1.63 16 11 F -0.18 -3.98 17.24 2.25 0.04 -3.94 16 12 C -0.12 -2.73 9.88 -39.98 -0.40 -3.13 16 13 C -0.15 -3.72 8.64 -39.29 -0.34 -4.05 16 14 C 0.12 3.01 5.73 -104.61 -0.60 2.41 16 15 C -0.43 -10.30 8.40 -37.96 -0.32 -10.62 16 16 H 0.08 1.96 7.39 -52.49 -0.39 1.57 16 17 C 0.08 1.71 5.15 -17.31 -0.09 1.62 16 18 N -0.78 -18.30 10.97 55.55 0.61 -17.69 16 19 Si 0.91 17.24 29.59 -169.99 -5.03 12.21 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 23 C -0.10 -1.62 5.95 -28.20 -0.17 -1.78 16 24 C 0.11 1.64 6.48 -3.59 -0.02 1.61 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.68 6.45 -51.93 -0.33 0.35 16 28 H 0.09 1.00 5.99 -51.93 -0.31 0.69 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 2.20 7.95 -52.48 -0.42 1.79 16 31 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 33 H 0.13 3.11 6.20 -52.49 -0.33 2.79 16 34 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.09 1.35 7.07 -51.93 -0.37 0.98 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -27.81 322.58 -8.30 -36.12 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.66 Total: 6.84 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -3.70 Total: -18.74 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.09 Total: -27.06 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.81 -8.30 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.591 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds