Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99776 * 2 1 4 4 N 1.34773 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46992 * 121.32354 * 0.02663 * 4 2 1 6 6 C 1.50339 * 109.18508 * 223.13247 * 5 4 2 7 7 C 1.31719 * 123.35986 * 349.38599 * 6 5 4 8 8 C 1.47159 * 117.84927 * 180.57328 * 7 6 5 9 9 C 1.39439 * 120.61798 * 104.73496 * 8 7 6 10 10 C 1.38198 * 119.89261 * 180.29774 * 9 8 7 11 11 F 1.35094 * 119.38026 * 179.72534 * 10 9 8 12 12 C 1.39095 * 121.23084 * 359.43491 * 10 9 8 13 13 C 1.36233 * 121.30868 * 0.57015 * 12 10 9 14 14 C 1.40909 * 119.98866 * 359.72273 * 13 12 10 15 15 C 1.40707 * 120.59467 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99620 * 155.04768 * 15 14 13 17 17 C 1.40078 * 120.00032 * 335.04875 * 15 14 13 18 18 N 1.30785 * 119.99754 * 342.67072 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 162.66698 * 17 15 14 20 20 H 1.48502 * 109.46887 * 94.66736 * 19 17 15 21 21 H 1.48494 * 109.47286 * 214.66617 * 19 17 15 22 22 H 1.48501 * 109.47115 * 334.66806 * 19 17 15 23 23 C 1.49998 * 124.29642 * 0.28777 * 7 6 5 24 24 C 1.47303 * 121.32058 * 180.02562 * 4 2 1 25 25 H 1.09002 * 109.47493 * 270.00603 * 1 2 3 26 26 H 1.09001 * 109.47013 * 30.00586 * 1 2 3 27 27 H 1.08998 * 109.47412 * 150.00378 * 1 2 3 28 28 H 1.08998 * 109.51954 * 343.23593 * 5 4 2 29 29 H 1.09002 * 109.51997 * 103.42698 * 5 4 2 30 30 H 1.08005 * 118.32116 * 169.13017 * 6 5 4 31 31 H 1.07995 * 120.05967 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.34628 * 180.27307 * 12 10 9 33 33 H 1.08002 * 120.00759 * 179.69515 * 13 12 10 34 34 H 0.96997 * 119.99931 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.31336 * 101.56484 * 23 7 6 36 36 H 1.08996 * 109.30871 * 221.17841 * 23 7 6 37 37 H 1.08994 * 109.76041 * 357.96434 * 24 4 2 38 38 H 1.09001 * 109.75977 * 237.20400 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4755 -2.4568 0.0005 6 6 2.1471 -3.3873 0.9718 7 6 3.3098 -3.1305 1.5349 8 6 3.8625 -4.1335 2.4591 9 6 4.9165 -4.9572 2.0656 10 6 5.4200 -5.8983 2.9435 11 9 6.4377 -6.6946 2.5496 12 6 4.9024 -6.0367 4.2272 13 6 3.8729 -5.2583 4.6631 14 6 3.3151 -4.2855 3.8099 15 6 2.2511 -3.4750 4.2468 16 1 2.0902 -2.5065 3.7970 17 6 1.4008 -3.9243 5.2652 18 7 1.3670 -5.1943 5.5761 19 14 0.3153 -2.7098 6.1794 20 1 -1.0287 -2.6750 5.5487 21 1 0.1859 -3.1313 7.5973 22 1 0.9257 -1.3573 6.1188 23 6 4.1103 -1.8856 1.2914 24 6 3.6535 -1.2011 0.0011 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 0.4376 -2.3042 0.2964 29 1 1.5104 -2.8910 -0.9987 30 1 1.6488 -4.3118 1.2237 31 1 5.3360 -4.8629 1.0749 32 1 5.3219 -6.7794 4.8898 33 1 3.4840 -5.3871 5.6625 34 1 0.7785 -5.5054 6.2815 35 1 3.9765 -1.2013 2.1292 36 1 5.1649 -2.1466 1.2040 37 1 4.0455 -0.1848 -0.0354 38 1 4.0094 -1.7653 -0.8610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241968028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = -67.973231 kcal Electronic energy + Delta-G solvation = -22728.303803 eV Core-core repulsion = 19256.051476 eV Total energy + Delta-G solvation = -3472.252328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.28566 -41.08289 -39.43692 -37.95339 -35.57600 -34.53490 -32.49941 -31.30907 -30.97071 -29.96936 -27.25091 -26.00685 -24.38095 -22.93695 -22.57410 -20.97153 -19.29861 -18.71280 -18.28903 -17.31596 -17.15153 -16.78331 -16.44761 -16.35159 -16.04112 -15.86086 -15.09693 -15.06022 -14.58656 -14.47908 -14.22319 -13.98997 -13.83502 -13.71389 -13.33523 -13.08202 -12.90338 -12.82102 -12.72729 -12.52356 -12.48531 -12.24644 -11.87662 -11.80408 -11.22870 -11.05999 -10.88291 -9.75479 -9.61926 -9.33052 -9.17548 -8.72998 -6.33834 0.67790 0.91571 1.38121 1.44219 1.45274 1.52428 1.63283 2.08122 2.15393 2.59278 3.51013 3.68691 3.87156 4.08415 4.10748 4.17784 4.28015 4.31024 4.41869 4.45371 4.54523 4.63069 4.71106 4.75480 4.82833 4.90643 5.02336 5.05942 5.11340 5.20966 5.25503 5.46060 5.54039 5.57848 5.87568 5.92361 5.98088 6.22117 6.26826 6.50190 6.56918 6.79902 6.92385 7.16505 8.19901 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.006864 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.913862 B = 4078.351076 C = 6017.244805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.602 6.602 4 N -0.613 5.613 5 C 0.149 3.851 6 C -0.174 4.174 7 C -0.040 4.040 8 C -0.172 4.172 9 C -0.100 4.100 10 C -0.074 4.074 11 F -0.175 7.175 12 C -0.125 4.125 13 C -0.175 4.175 14 C 0.096 3.904 15 C -0.449 4.449 16 H 0.079 0.921 17 C 0.041 3.959 18 N -0.806 5.806 19 Si 0.973 3.027 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.088 4.088 24 C 0.116 3.884 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.294 0.706 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 4.597 -7.793 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.485 6.485 4 N -0.345 5.345 5 C 0.028 3.972 6 C -0.193 4.193 7 C -0.041 4.041 8 C -0.174 4.174 9 C -0.119 4.119 10 C -0.093 4.093 11 F -0.154 7.154 12 C -0.144 4.144 13 C -0.194 4.194 14 C 0.093 3.907 15 C -0.477 4.477 16 H 0.097 0.903 17 C -0.177 4.177 18 N -0.430 5.430 19 Si 0.794 3.206 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.126 4.126 24 C -0.006 4.006 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.968 4.915 -7.658 10.367 hybrid contribution 0.170 -0.320 0.961 1.026 sum -4.799 4.595 -6.697 9.434 Atomic orbital electron populations 1.21992 0.88428 1.06512 1.05885 1.21537 0.92323 0.82156 0.74136 1.90659 1.72075 1.32583 1.53144 1.48391 1.07275 1.06672 1.72180 1.20780 0.96704 0.80552 0.99176 1.22733 0.95998 1.00647 0.99876 1.19166 0.95647 0.93829 0.95411 1.19926 1.01589 1.02125 0.93762 1.20735 0.97113 0.95769 0.98245 1.17240 0.95448 1.00175 0.96468 1.91270 1.58812 1.73684 1.91676 1.20510 0.98429 1.00854 0.94616 1.20805 0.97657 1.00649 1.00318 1.19024 0.91264 0.90960 0.89448 1.19581 1.09381 1.02905 1.15826 0.90280 1.26752 0.98131 0.96803 0.95983 1.69824 1.31975 1.16120 1.25056 0.85307 0.78555 0.78811 0.77970 1.17923 1.19165 1.18746 1.20659 0.99827 0.94299 0.97765 1.21614 0.80033 1.01645 0.97328 0.88067 0.88198 0.87109 0.86580 0.87829 0.87760 0.86031 0.87294 0.86881 0.89540 0.92609 0.89822 0.89864 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.40 71.24 0.67 -2.29 16 2 C 0.51 14.04 7.83 87.66 0.69 14.72 16 3 O -0.60 -21.85 16.58 -3.05 -0.05 -21.90 16 4 N -0.61 -16.17 2.96 -823.43 -2.44 -18.61 16 5 C 0.15 3.34 6.26 85.43 0.53 3.88 16 6 C -0.17 -5.56 9.37 24.87 0.23 -5.33 16 7 C -0.04 -1.47 4.28 -18.44 -0.08 -1.55 16 8 C -0.17 -7.63 5.20 -18.48 -0.10 -7.73 16 9 C -0.10 -4.35 9.76 22.55 0.22 -4.13 16 10 C -0.07 -3.42 7.28 22.47 0.16 -3.25 16 11 F -0.17 -7.81 17.24 44.97 0.78 -7.04 16 12 C -0.12 -5.93 9.88 22.01 0.22 -5.71 16 13 C -0.17 -8.79 8.64 22.46 0.19 -8.59 16 14 C 0.10 4.76 5.73 -19.86 -0.11 4.64 16 15 C -0.45 -21.65 8.40 23.32 0.20 -21.45 16 16 H 0.08 3.77 7.39 -2.91 -0.02 3.75 16 17 C 0.04 1.88 5.15 85.30 0.44 2.32 16 18 N -0.81 -38.20 10.97 21.85 0.24 -37.96 16 19 Si 0.97 34.76 29.59 68.60 2.03 36.79 16 20 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 21 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 22 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 23 C -0.09 -2.86 5.95 29.64 0.18 -2.68 16 24 C 0.12 3.20 6.48 86.24 0.56 3.76 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.11 1.28 6.45 -2.39 -0.02 1.27 16 28 H 0.12 2.05 5.99 -2.39 -0.01 2.04 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 3.69 7.95 -2.91 -0.02 3.67 16 31 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.11 5.85 6.20 -2.91 -0.02 5.83 16 34 H 0.29 12.53 8.29 -92.71 -0.77 11.77 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 37 H 0.08 2.43 7.07 -2.39 -0.02 2.41 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -61.27 322.58 5.63 -55.64 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 1.08 Total: 26.49 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 4.00 Total: -33.40 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -2.20 Total: -56.58 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.78 Total: -7.04 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Total: -61.27 5.63 -55.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.336 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds