Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21284 * 119.99693 * 2 1 4 4 N 1.34767 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.46988 * 121.32243 * 354.45071 * 4 2 1 6 6 C 1.50351 * 109.15259 * 223.36013 * 5 4 2 7 7 C 1.31638 * 123.36403 * 348.91964 * 6 5 4 8 8 C 1.47301 * 117.84698 * 180.82814 * 7 6 5 9 9 C 1.40259 * 119.88056 * 244.97553 * 8 7 6 10 10 C 1.36114 * 120.15810 * 179.69160 * 9 8 7 11 11 C 1.40989 * 119.92145 * 0.60583 * 10 9 8 12 12 C 1.40858 * 120.11632 * 179.69254 * 11 10 9 13 13 H 1.07999 * 120.00498 * 154.64962 * 12 11 10 14 14 C 1.40025 * 119.99752 * 334.64916 * 12 11 10 15 15 N 1.30816 * 119.99911 * 334.91813 * 14 12 11 16 16 Si 1.86793 * 120.00043 * 154.91566 * 14 12 11 17 17 H 1.48494 * 109.47236 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46953 * 300.00063 * 16 14 12 19 19 H 1.48497 * 109.47463 * 59.99900 * 16 14 12 20 20 C 1.41228 * 119.77501 * 359.42216 * 11 10 9 21 21 F 1.35102 * 120.08580 * 180.30021 * 20 11 10 22 22 C 1.36479 * 119.83493 * 0.26852 * 20 11 10 23 23 C 1.50002 * 124.30682 * 1.10244 * 7 6 5 24 24 C 1.47308 * 121.32642 * 174.46968 * 4 2 1 25 25 H 1.08999 * 109.46404 * 184.83881 * 1 2 3 26 26 H 1.09001 * 109.47160 * 304.83848 * 1 2 3 27 27 H 1.08997 * 109.47172 * 64.84065 * 1 2 3 28 28 H 1.08999 * 109.52856 * 103.46186 * 5 4 2 29 29 H 1.08997 * 109.52964 * 343.26329 * 5 4 2 30 30 H 1.08000 * 118.32393 * 168.94073 * 6 5 4 31 31 H 1.07996 * 119.92319 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.03556 * 180.32314 * 10 9 8 33 33 H 0.96997 * 119.99610 * 354.82594 * 15 14 12 34 34 H 1.07995 * 119.96384 * 180.02562 * 22 20 11 35 35 H 1.09000 * 109.31118 * 101.02379 * 23 7 6 36 36 H 1.08993 * 109.31240 * 220.44324 * 23 7 6 37 37 H 1.09003 * 109.75773 * 237.18257 * 24 4 2 38 38 H 1.08999 * 109.75561 * 357.94303 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4808 -2.4538 0.1203 6 6 2.2313 -3.3356 1.0793 7 6 3.4379 -3.0573 1.5260 8 6 4.0684 -4.0170 2.4486 9 6 4.3439 -3.6377 3.7705 10 6 4.9207 -4.5220 4.6296 11 6 5.2536 -5.8182 4.1860 12 6 5.8565 -6.7345 5.0698 13 1 5.7468 -7.7962 4.9047 14 6 6.5981 -6.2689 6.1624 15 7 7.1484 -5.0828 6.1217 16 14 6.8018 -7.3414 7.6782 17 1 7.6233 -6.6237 8.6857 18 1 5.4666 -7.6438 8.2535 19 1 7.4767 -8.6091 7.3006 20 6 4.9754 -6.1968 2.8542 21 9 5.2862 -7.4393 2.4242 22 6 4.3910 -5.3045 2.0027 23 6 4.2106 -1.8243 1.1619 24 6 3.6486 -1.2040 -0.1218 25 1 -0.3632 -1.0240 0.0867 26 1 -0.3633 0.5871 0.8435 27 1 -0.3633 0.4369 -0.9301 28 1 1.4329 -2.9357 -0.8562 29 1 0.4710 -2.2854 0.4944 30 1 1.7563 -4.2441 1.4190 31 1 4.0936 -2.6431 4.1089 32 1 5.1271 -4.2295 5.6485 33 1 7.1066 -4.5565 5.3080 34 1 4.1770 -5.5919 0.9839 35 1 4.1418 -1.1023 1.9756 36 1 5.2565 -2.0876 1.0050 37 1 3.9321 -1.8095 -0.9827 38 1 4.0341 -0.1913 -0.2397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241968362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -58.460209 kcal Electronic energy + Delta-G solvation = -22146.866289 eV Core-core repulsion = 18675.026477 eV Total energy + Delta-G solvation = -3471.839812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.39796 -40.12430 -38.20805 -36.91939 -34.56167 -32.88803 -31.48016 -29.76213 -29.38926 -28.99187 -26.22622 -24.17371 -23.43073 -21.38723 -21.00887 -19.97811 -18.19809 -17.56571 -17.23566 -16.04544 -15.58134 -15.43945 -15.14238 -14.86741 -14.29582 -14.13501 -14.09032 -13.82082 -13.58759 -13.39606 -13.02193 -12.77910 -12.60947 -12.45521 -12.09886 -11.97523 -11.79646 -11.44233 -11.31828 -11.16001 -10.72357 -10.54762 -10.48466 -10.11518 -9.89254 -9.66389 -9.21837 -8.73321 -8.52443 -7.85672 -7.65115 -7.36563 -4.63684 2.17363 2.54938 2.59840 2.66549 2.94837 3.06223 3.14512 3.26877 3.86534 4.29798 4.49649 4.84176 4.94585 5.07334 5.17067 5.20143 5.24696 5.31434 5.39470 5.44502 5.64869 5.76152 5.77302 5.84055 5.92238 6.04894 6.13781 6.24325 6.44296 6.63568 6.74511 6.84194 7.16132 7.20809 7.37022 7.42808 7.52286 7.61389 7.69072 7.83171 8.03117 8.08800 8.46634 8.59755 9.79939 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003503 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.090644 B = 7990.700790 C = 8410.159511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.515 3.485 3 O -0.555 6.555 4 N -0.612 5.612 5 C 0.146 3.854 6 C -0.213 4.213 7 C -0.012 4.012 8 C -0.203 4.203 9 C -0.063 4.063 10 C -0.210 4.210 11 C 0.075 3.925 12 C -0.497 4.497 13 H 0.083 0.917 14 C 0.037 3.963 15 N -0.780 5.780 16 Si 1.068 2.932 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.273 1.273 20 C -0.036 4.036 21 F -0.163 7.163 22 C -0.086 4.086 23 C -0.098 4.098 24 C 0.112 3.888 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.302 0.698 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 4.383 -7.788 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.304 3.696 3 O -0.433 6.433 4 N -0.346 5.346 5 C 0.024 3.976 6 C -0.232 4.232 7 C -0.012 4.012 8 C -0.204 4.204 9 C -0.081 4.081 10 C -0.229 4.229 11 C 0.071 3.929 12 C -0.524 4.524 13 H 0.101 0.899 14 C -0.186 4.186 15 N -0.401 5.401 16 Si 0.891 3.109 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.056 4.056 21 F -0.143 7.143 22 C -0.105 4.105 23 C -0.136 4.136 24 C -0.010 4.010 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.124 4.927 -6.277 11.387 hybrid contribution -0.610 -0.373 -1.620 1.771 sum -8.733 4.554 -7.896 12.624 Atomic orbital electron populations 1.22000 0.91983 1.04647 1.05077 1.20735 0.90576 0.82913 0.75375 1.90696 1.70735 1.31071 1.50815 1.48292 1.07824 1.06248 1.72285 1.20605 0.95866 0.82407 0.98734 1.22612 0.96495 1.01517 1.02578 1.19457 0.93309 0.93863 0.94602 1.17894 1.14392 0.93681 0.94439 1.20408 0.97381 0.97587 0.92771 1.20658 1.07900 0.94993 0.99347 1.17720 0.91989 0.93278 0.89869 1.20614 1.27360 0.96229 1.08163 0.89865 1.27207 0.91723 0.97169 1.02533 1.70471 1.27932 1.09482 1.32254 0.83579 0.78038 0.75251 0.74045 1.19559 1.19698 1.19821 1.17324 1.13219 0.81440 0.93644 1.91283 1.92356 1.40517 1.90102 1.20290 0.99602 0.92971 0.97675 1.20818 0.99944 0.95561 0.97275 1.21728 0.79212 1.02404 0.97684 0.89923 0.88881 0.88825 0.90931 0.89081 0.86405 0.88738 0.86902 0.88374 0.88037 0.90514 0.89707 0.91029 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 10.09 36.01 0.36 -1.13 16 2 C 0.51 6.73 7.82 -10.99 -0.09 6.64 16 3 O -0.55 -9.45 16.60 5.55 0.09 -9.36 16 4 N -0.61 -7.71 2.96 -174.06 -0.51 -8.23 16 5 C 0.15 1.57 6.36 -5.10 -0.03 1.54 16 6 C -0.21 -3.03 9.47 -36.34 -0.34 -3.37 16 7 C -0.01 -0.20 5.26 -103.14 -0.54 -0.74 16 8 C -0.20 -4.10 5.10 -104.78 -0.53 -4.63 16 9 C -0.06 -1.36 9.65 -39.59 -0.38 -1.74 16 10 C -0.21 -5.05 7.85 -39.30 -0.31 -5.36 16 11 C 0.08 1.94 5.31 -106.73 -0.57 1.37 16 12 C -0.50 -12.92 8.69 -37.92 -0.33 -13.25 16 13 H 0.08 2.16 7.78 -52.49 -0.41 1.75 16 14 C 0.04 0.91 4.94 -17.31 -0.09 0.82 16 15 N -0.78 -19.73 12.32 55.55 0.68 -19.04 16 16 Si 1.07 20.62 30.00 -169.99 -5.10 15.52 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.04 -0.90 7.25 -39.08 -0.28 -1.18 16 21 F -0.16 -4.07 16.70 2.25 0.04 -4.03 16 22 C -0.09 -1.87 9.55 -39.55 -0.38 -2.24 16 23 C -0.10 -1.46 5.90 -28.09 -0.17 -1.62 16 24 C 0.11 1.46 6.49 -3.47 -0.02 1.44 16 25 H 0.08 0.53 5.34 -51.93 -0.28 0.25 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.77 5.56 -51.93 -0.29 0.48 16 30 H 0.12 1.71 7.95 -52.49 -0.42 1.30 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.11 2.79 6.44 -52.49 -0.34 2.45 16 33 H 0.30 7.83 6.61 -40.82 -0.27 7.56 16 34 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.25 7.09 -51.93 -0.37 0.88 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -29.11 321.35 -8.20 -37.31 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.54 Total: 6.44 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.70 Total: -23.46 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.17 Total: -27.27 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.10 Total: 15.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.11 -8.20 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.149 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds