Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21284 * 119.99693 * 2 1 4 4 N 1.34767 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.46988 * 121.32243 * 354.45071 * 4 2 1 6 6 C 1.50351 * 109.15259 * 223.36013 * 5 4 2 7 7 C 1.31638 * 123.36403 * 348.91964 * 6 5 4 8 8 C 1.47301 * 117.84698 * 180.82814 * 7 6 5 9 9 C 1.40259 * 119.88056 * 244.97553 * 8 7 6 10 10 C 1.36114 * 120.15810 * 179.69160 * 9 8 7 11 11 C 1.40989 * 119.92145 * 0.60583 * 10 9 8 12 12 C 1.40858 * 120.11632 * 179.69254 * 11 10 9 13 13 H 1.07999 * 120.00498 * 154.64962 * 12 11 10 14 14 C 1.40025 * 119.99752 * 334.64916 * 12 11 10 15 15 N 1.30816 * 119.99911 * 334.91813 * 14 12 11 16 16 Si 1.86793 * 120.00043 * 154.91566 * 14 12 11 17 17 H 1.48494 * 109.47236 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46953 * 300.00063 * 16 14 12 19 19 H 1.48497 * 109.47463 * 59.99900 * 16 14 12 20 20 C 1.41228 * 119.77501 * 359.42216 * 11 10 9 21 21 F 1.35102 * 120.08580 * 180.30021 * 20 11 10 22 22 C 1.36479 * 119.83493 * 0.26852 * 20 11 10 23 23 C 1.50002 * 124.30682 * 1.10244 * 7 6 5 24 24 C 1.47308 * 121.32642 * 174.46968 * 4 2 1 25 25 H 1.08999 * 109.46404 * 184.83881 * 1 2 3 26 26 H 1.09001 * 109.47160 * 304.83848 * 1 2 3 27 27 H 1.08997 * 109.47172 * 64.84065 * 1 2 3 28 28 H 1.08999 * 109.52856 * 103.46186 * 5 4 2 29 29 H 1.08997 * 109.52964 * 343.26329 * 5 4 2 30 30 H 1.08000 * 118.32393 * 168.94073 * 6 5 4 31 31 H 1.07996 * 119.92319 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.03556 * 180.32314 * 10 9 8 33 33 H 0.96997 * 119.99610 * 354.82594 * 15 14 12 34 34 H 1.07995 * 119.96384 * 180.02562 * 22 20 11 35 35 H 1.09000 * 109.31118 * 101.02379 * 23 7 6 36 36 H 1.08993 * 109.31240 * 220.44324 * 23 7 6 37 37 H 1.09003 * 109.75773 * 237.18257 * 24 4 2 38 38 H 1.08999 * 109.75561 * 357.94303 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4808 -2.4538 0.1203 6 6 2.2313 -3.3356 1.0793 7 6 3.4379 -3.0573 1.5260 8 6 4.0684 -4.0170 2.4486 9 6 4.3439 -3.6377 3.7705 10 6 4.9207 -4.5220 4.6296 11 6 5.2536 -5.8182 4.1860 12 6 5.8565 -6.7345 5.0698 13 1 5.7468 -7.7962 4.9047 14 6 6.5981 -6.2689 6.1624 15 7 7.1484 -5.0828 6.1217 16 14 6.8018 -7.3414 7.6782 17 1 7.6233 -6.6237 8.6857 18 1 5.4666 -7.6438 8.2535 19 1 7.4767 -8.6091 7.3006 20 6 4.9754 -6.1968 2.8542 21 9 5.2862 -7.4393 2.4242 22 6 4.3910 -5.3045 2.0027 23 6 4.2106 -1.8243 1.1619 24 6 3.6486 -1.2040 -0.1218 25 1 -0.3632 -1.0240 0.0867 26 1 -0.3633 0.5871 0.8435 27 1 -0.3633 0.4369 -0.9301 28 1 1.4329 -2.9357 -0.8562 29 1 0.4710 -2.2854 0.4944 30 1 1.7563 -4.2441 1.4190 31 1 4.0936 -2.6431 4.1089 32 1 5.1271 -4.2295 5.6485 33 1 7.1066 -4.5565 5.3080 34 1 4.1770 -5.5919 0.9839 35 1 4.1418 -1.1023 1.9756 36 1 5.2565 -2.0876 1.0050 37 1 3.9321 -1.8095 -0.9827 38 1 4.0341 -0.1913 -0.2397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241968362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -73.522487 kcal Electronic energy + Delta-G solvation = -22147.519438 eV Core-core repulsion = 18675.026477 eV Total energy + Delta-G solvation = -3472.492961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.34284 -41.17064 -39.81490 -38.25712 -36.19950 -34.24141 -32.56581 -31.29604 -31.05939 -30.11741 -27.69547 -25.62684 -24.54758 -23.09436 -22.75455 -21.07969 -20.05160 -18.78094 -18.37864 -17.21371 -17.06214 -16.78696 -16.66342 -16.47114 -16.17296 -15.70959 -15.28666 -15.18896 -14.74410 -14.62153 -14.48555 -14.28262 -13.88411 -13.69772 -13.48064 -13.07520 -12.93390 -12.86827 -12.75965 -12.60756 -12.29308 -12.00035 -11.98242 -11.82083 -11.37352 -11.00959 -10.91051 -9.94261 -9.75503 -9.65730 -9.41796 -9.21398 -6.57237 0.53794 0.72157 1.26091 1.47828 1.59303 1.60039 1.77994 2.02242 2.26406 2.51415 3.26818 3.61214 3.75777 3.96015 4.03992 4.08663 4.15031 4.17010 4.28720 4.34027 4.53580 4.62035 4.66763 4.69964 4.77542 4.79138 4.82607 4.99283 5.02931 5.12333 5.27816 5.33554 5.43331 5.60833 5.64805 5.72214 5.80819 5.97042 6.06909 6.18597 6.45697 6.58495 6.71897 7.12900 7.88269 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003503 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.090644 B = 7990.700790 C = 8410.159511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.604 6.604 4 N -0.615 5.615 5 C 0.144 3.856 6 C -0.177 4.177 7 C -0.053 4.053 8 C -0.170 4.170 9 C -0.069 4.069 10 C -0.217 4.217 11 C 0.048 3.952 12 C -0.542 4.542 13 H 0.070 0.930 14 C 0.007 3.993 15 N -0.801 5.801 16 Si 1.118 2.882 17 H -0.266 1.266 18 H -0.260 1.260 19 H -0.260 1.260 20 C -0.063 4.063 21 F -0.171 7.171 22 C -0.087 4.087 23 C -0.090 4.090 24 C 0.115 3.885 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.287 0.713 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.741 4.783 -9.281 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.486 6.486 4 N -0.348 5.348 5 C 0.023 3.977 6 C -0.195 4.195 7 C -0.053 4.053 8 C -0.171 4.171 9 C -0.088 4.088 10 C -0.236 4.236 11 C 0.045 3.955 12 C -0.569 4.569 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.423 5.423 16 Si 0.934 3.066 17 H -0.190 1.190 18 H -0.185 1.185 19 H -0.184 1.184 20 C -0.083 4.083 21 F -0.150 7.150 22 C -0.106 4.106 23 C -0.127 4.127 24 C -0.007 4.007 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.751 5.313 -7.797 14.304 hybrid contribution 0.015 -0.387 -1.382 1.436 sum -10.736 4.926 -9.179 14.959 Atomic orbital electron populations 1.22044 0.88051 1.06600 1.06184 1.21620 0.92431 0.82114 0.74047 1.90679 1.72088 1.32782 1.53006 1.48433 1.07564 1.07015 1.71779 1.20902 0.96414 0.80973 0.99399 1.22941 0.95140 1.01194 1.00257 1.19351 0.94901 0.94472 0.96565 1.18334 1.10891 0.93638 0.94258 1.20700 0.96815 0.97989 0.93269 1.20641 1.08539 0.95116 0.99321 1.18025 0.92758 0.94104 0.90657 1.20706 1.30032 0.95704 1.10423 0.91180 1.28547 0.90265 0.97558 1.04698 1.70583 1.29747 1.10446 1.31515 0.83000 0.78678 0.74118 0.70838 1.18974 1.18481 1.18412 1.17691 1.14643 0.81920 0.94074 1.91249 1.92590 1.41070 1.90078 1.20598 0.98692 0.92918 0.98347 1.20676 0.99629 0.94590 0.97845 1.21641 0.80019 1.01934 0.97147 0.87328 0.88388 0.87183 0.87780 0.85649 0.86233 0.86829 0.88250 0.90064 0.85507 0.91893 0.90370 0.89263 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.09 71.24 0.72 -1.38 16 2 C 0.51 11.71 7.82 87.66 0.69 12.39 16 3 O -0.60 -19.80 16.60 -3.04 -0.05 -19.85 16 4 N -0.61 -13.21 2.96 -822.99 -2.43 -15.65 16 5 C 0.14 2.30 6.36 85.43 0.54 2.84 16 6 C -0.18 -4.24 9.47 24.94 0.24 -4.01 16 7 C -0.05 -1.59 5.26 -18.33 -0.10 -1.69 16 8 C -0.17 -6.65 5.10 -19.97 -0.10 -6.75 16 9 C -0.07 -2.98 9.65 22.27 0.21 -2.77 16 10 C -0.22 -10.79 7.85 22.45 0.18 -10.62 16 11 C 0.05 2.57 5.31 -21.23 -0.11 2.46 16 12 C -0.54 -29.56 8.69 23.34 0.20 -29.36 16 13 H 0.07 3.85 7.78 -2.91 -0.02 3.83 16 14 C 0.01 0.36 4.94 85.28 0.42 0.78 16 15 N -0.80 -42.30 12.32 21.84 0.27 -42.03 16 16 Si 1.12 42.38 30.00 68.60 2.06 44.43 16 17 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 20 C -0.06 -3.19 7.25 22.59 0.16 -3.03 16 21 F -0.17 -8.70 16.70 44.97 0.75 -7.95 16 22 C -0.09 -3.67 9.55 22.29 0.21 -3.46 16 23 C -0.09 -2.52 5.90 29.71 0.18 -2.34 16 24 C 0.12 2.75 6.49 86.31 0.56 3.31 16 25 H 0.11 0.73 5.34 -2.39 -0.01 0.72 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.13 1.26 5.56 -2.39 -0.01 1.25 16 30 H 0.12 2.92 7.95 -2.91 -0.02 2.89 16 31 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.10 5.15 6.44 -2.91 -0.02 5.13 16 33 H 0.29 15.71 6.61 -92.71 -0.61 15.10 16 34 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.14 7.09 -2.39 -0.02 2.13 16 Total: -1.00 -67.21 321.35 5.83 -61.38 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.24 Total: 23.29 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 4.00 Total: -43.62 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -2.17 Total: -57.68 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.75 Total: -7.95 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.06 Total: 44.43 kcal Total: -67.21 5.83 -61.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.142 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds