Wall clock time and date at job start Tue Mar 31 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99763 * 2 1 4 4 N 1.34770 * 120.00234 * 179.97438 * 2 1 3 5 5 C 1.46995 * 121.33626 * 0.02804 * 4 2 1 6 6 C 1.50337 * 109.18847 * 223.02713 * 5 4 2 7 7 C 1.31113 * 123.43800 * 349.39860 * 6 5 4 8 8 C 1.47798 * 117.80911 * 180.58943 * 7 6 5 9 9 C 1.39787 * 120.03608 * 105.00763 * 8 7 6 10 10 C 1.38420 * 120.39880 * 180.27768 * 9 8 7 11 11 C 1.37677 * 120.47526 * 359.45094 * 10 9 8 12 12 C 1.40760 * 120.06755 * 0.27281 * 11 10 9 13 13 C 1.41324 * 120.20182 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99374 * 154.53265 * 13 12 11 15 15 C 1.39925 * 120.00096 * 334.53713 * 13 12 11 16 16 N 1.30854 * 119.99999 * 343.07428 * 15 13 12 17 17 Si 1.86796 * 119.99912 * 163.07865 * 15 13 12 18 18 H 1.48498 * 109.47442 * 90.00002 * 17 15 13 19 19 H 1.48507 * 109.46838 * 209.99855 * 17 15 13 20 20 H 1.48497 * 109.47196 * 329.99539 * 17 15 13 21 21 C 1.39272 * 120.03995 * 284.74022 * 8 7 6 22 22 F 1.35093 * 120.23288 * 0.02562 * 21 8 7 23 23 C 1.49987 * 124.37900 * 0.31168 * 7 6 5 24 24 C 1.47307 * 121.33911 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.46989 * 240.00751 * 1 2 3 26 26 H 1.09001 * 109.47177 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47280 * 120.00340 * 1 2 3 28 28 H 1.09001 * 109.52121 * 343.12232 * 5 4 2 29 29 H 1.09002 * 109.52692 * 103.31139 * 5 4 2 30 30 H 1.08005 * 118.28003 * 169.15032 * 6 5 4 31 31 H 1.08001 * 119.80384 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.75866 * 179.71976 * 10 9 8 33 33 H 1.08000 * 119.97099 * 180.29329 * 11 10 9 34 34 H 0.96994 * 119.99852 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.31548 * 101.55643 * 23 7 6 36 36 H 1.09008 * 109.30772 * 220.98114 * 23 7 6 37 37 H 1.08996 * 109.76531 * 358.15207 * 24 4 2 38 38 H 1.09000 * 109.76824 * 237.37620 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4759 -2.4570 0.0005 6 6 2.1493 -3.3882 0.9698 7 6 3.3072 -3.1342 1.5299 8 6 3.8618 -4.1443 2.4555 9 6 4.9212 -4.9600 2.0478 10 6 5.4425 -5.9123 2.9065 11 6 4.9325 -6.0612 4.1767 12 6 3.8695 -5.2464 4.6097 13 6 3.3441 -5.3964 5.9131 14 1 2.8519 -4.5651 6.3958 15 6 3.4618 -6.6219 6.5781 16 7 3.7464 -7.7071 5.9046 17 14 3.2126 -6.7087 8.4273 18 1 1.7806 -6.9688 8.7222 19 1 4.0407 -7.8069 8.9874 20 1 3.6184 -5.4196 9.0426 21 6 3.3330 -4.2807 3.7367 22 9 2.3124 -3.4923 4.1388 23 6 4.1096 -1.8900 1.2895 24 6 3.6536 -1.2015 0.0000 25 1 -0.3633 -0.5137 0.8901 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 0.4384 -2.3050 0.2983 29 1 1.5091 -2.8903 -0.9991 30 1 1.6512 -4.3130 1.2209 31 1 5.3329 -4.8494 1.0555 32 1 6.2581 -6.5401 2.5793 33 1 5.3486 -6.8036 4.8416 34 1 3.8276 -8.5566 6.3656 35 1 3.9769 -1.2077 2.1291 36 1 5.1643 -2.1521 1.2046 37 1 4.0460 -0.1852 -0.0339 38 1 4.0089 -1.7635 -0.8637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241968867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:50 Heat of formation + Delta-G solvation = -55.460752 kcal Electronic energy + Delta-G solvation = -22487.653101 eV Core-core repulsion = 19015.943356 eV Total energy + Delta-G solvation = -3471.709746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.28016 -40.05356 -37.94175 -36.78163 -34.22493 -32.96876 -31.45700 -29.88814 -29.52131 -28.53968 -25.41807 -25.06032 -23.38728 -21.27096 -20.79420 -19.95532 -17.85548 -17.36563 -16.49353 -16.05052 -15.91255 -15.43311 -15.35946 -14.66757 -14.47663 -14.08741 -13.94503 -13.52204 -13.49041 -13.19768 -12.91867 -12.78644 -12.49798 -12.23609 -12.03567 -11.82682 -11.71113 -11.46875 -11.24785 -11.14137 -10.85244 -10.71389 -10.46503 -9.94122 -9.85223 -9.63336 -9.32036 -8.69896 -8.49886 -7.57201 -7.35653 -6.89755 -4.50020 2.32661 2.60577 2.61533 2.71951 2.99547 3.00901 3.04014 3.10748 3.84540 4.42916 4.55170 4.92869 5.08890 5.14827 5.15697 5.25245 5.29619 5.36396 5.46167 5.49701 5.68716 5.78833 5.82599 5.86168 6.05459 6.15901 6.22641 6.45078 6.49453 6.65614 6.86141 6.98986 7.07713 7.26095 7.39674 7.45960 7.51386 7.83217 7.89236 7.99750 8.14243 8.43747 8.65189 8.74050 10.03914 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.004049 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.680955 B = 6914.207679 C = 7510.988206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.516 3.484 3 O -0.555 6.555 4 N -0.613 5.613 5 C 0.148 3.852 6 C -0.190 4.190 7 C -0.037 4.037 8 C -0.074 4.074 9 C -0.203 4.203 10 C -0.112 4.112 11 C -0.143 4.143 12 C 0.086 3.914 13 C -0.455 4.455 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.791 5.791 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.012 4.012 22 F -0.159 7.159 23 C -0.095 4.095 24 C 0.113 3.887 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.283 0.717 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 5.054 -8.979 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.305 3.695 3 O -0.433 6.433 4 N -0.347 5.347 5 C 0.026 3.974 6 C -0.209 4.209 7 C -0.038 4.038 8 C -0.075 4.075 9 C -0.223 4.223 10 C -0.130 4.130 11 C -0.163 4.163 12 C 0.082 3.918 13 C -0.484 4.484 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.032 4.032 22 F -0.138 7.138 23 C -0.133 4.133 24 C -0.010 4.010 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.787 5.385 -8.927 10.791 hybrid contribution -0.320 -0.386 0.993 1.113 sum -3.107 4.999 -7.933 9.878 Atomic orbital electron populations 1.21942 0.91867 1.05251 1.04270 1.20737 0.90624 0.82820 0.75321 1.90688 1.70869 1.31005 1.50740 1.48256 1.07340 1.06076 1.73038 1.20541 0.96127 0.82010 0.98726 1.22479 0.97078 1.00778 1.00517 1.19511 0.94590 0.94131 0.95542 1.18490 0.98610 0.98008 0.92429 1.20208 1.01026 1.01541 0.99505 1.20648 0.99562 0.97959 0.94841 1.21227 0.96956 1.02395 0.95725 1.17563 0.91296 0.90281 0.92609 1.19498 1.32540 0.97566 0.98765 0.89997 1.25897 0.92445 0.94869 1.00940 1.69807 1.34275 0.99591 1.37872 0.86243 0.79229 0.79227 0.81733 1.19311 1.19916 1.18304 1.17892 0.92326 0.99716 0.93285 1.91271 1.57976 1.73317 1.91240 1.20746 0.99955 0.94854 0.97731 1.21690 0.79397 1.02232 0.97635 0.89134 0.89151 0.89464 0.89119 0.90614 0.86217 0.88515 0.88631 0.85722 0.90587 0.90383 0.89548 0.88850 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.75 36.01 0.32 -1.31 16 2 C 0.52 7.15 7.83 -10.99 -0.09 7.06 16 3 O -0.55 -9.76 16.57 5.56 0.09 -9.66 16 4 N -0.61 -8.20 2.96 -174.14 -0.52 -8.71 16 5 C 0.15 1.74 6.49 -5.10 -0.03 1.71 16 6 C -0.19 -2.99 9.56 -36.23 -0.35 -3.33 16 7 C -0.04 -0.67 4.87 -102.81 -0.50 -1.17 16 8 C -0.07 -1.60 5.00 -105.02 -0.52 -2.13 16 9 C -0.20 -4.22 9.78 -38.94 -0.38 -4.60 16 10 C -0.11 -2.44 10.00 -39.72 -0.40 -2.83 16 11 C -0.14 -3.54 8.68 -38.83 -0.34 -3.88 16 12 C 0.09 2.25 5.57 -106.80 -0.59 1.65 16 13 C -0.45 -12.01 8.77 -37.78 -0.33 -12.34 16 14 H 0.08 2.15 7.74 -52.49 -0.41 1.75 16 15 C 0.08 1.88 5.15 -17.34 -0.09 1.79 16 16 N -0.79 -19.66 10.96 55.55 0.61 -19.05 16 17 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.01 -0.30 7.27 -38.23 -0.28 -0.57 16 22 F -0.16 -3.97 16.27 2.25 0.04 -3.93 16 23 C -0.10 -1.48 5.95 -28.16 -0.17 -1.64 16 24 C 0.11 1.52 6.49 -3.53 -0.02 1.49 16 25 H 0.09 0.78 7.57 -51.93 -0.39 0.38 16 26 H 0.09 0.81 8.12 -51.93 -0.42 0.38 16 27 H 0.09 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.09 0.88 6.24 -51.93 -0.32 0.55 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.12 1.99 7.94 -52.48 -0.42 1.57 16 31 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.13 3.15 6.18 -52.49 -0.32 2.83 16 34 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.26 8.13 -51.92 -0.42 0.83 16 37 H 0.09 1.29 7.07 -51.93 -0.37 0.92 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -29.70 323.82 -8.45 -38.15 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.75 Total: 5.16 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.77 Total: -20.10 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.09 Total: -27.76 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.70 -8.45 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.315 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds