Wall clock time and date at job start Tue Mar 31 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21277 * 119.99592 * 2 1 4 4 N 1.34770 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.46983 * 121.32771 * 0.02562 * 4 2 1 6 6 C 1.50347 * 109.15236 * 223.34337 * 5 4 2 7 7 C 1.31753 * 123.34815 * 348.92707 * 6 5 4 8 8 C 1.47114 * 117.85318 * 180.80637 * 7 6 5 9 9 C 1.39538 * 120.55420 * 105.00289 * 8 7 6 10 10 C 1.37807 * 120.07027 * 179.97438 * 9 8 7 11 11 C 1.39079 * 121.27834 * 359.97200 * 10 9 8 12 12 F 1.35096 * 119.42723 * 180.02562 * 11 10 9 13 13 C 1.37525 * 121.14653 * 0.05017 * 11 10 9 14 14 C 1.40837 * 119.82150 * 359.68783 * 13 11 10 15 15 C 1.40758 * 120.60339 * 180.27682 * 14 13 11 16 16 H 1.08003 * 120.00123 * 204.85576 * 15 14 13 17 17 C 1.40086 * 120.00212 * 24.85169 * 15 14 13 18 18 N 1.30762 * 120.00019 * 15.20473 * 17 15 14 19 19 Si 1.86798 * 120.00064 * 195.20805 * 17 15 14 20 20 H 1.48497 * 109.47686 * 60.00004 * 19 17 15 21 21 H 1.48501 * 109.47162 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46960 * 299.99545 * 19 17 15 23 23 C 1.50000 * 124.29325 * 0.81023 * 7 6 5 24 24 C 1.47300 * 121.32032 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.46786 * 239.99395 * 1 2 3 26 26 H 1.09003 * 109.46917 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46883 * 119.99941 * 1 2 3 28 28 H 1.09008 * 109.51964 * 343.24428 * 5 4 2 29 29 H 1.08996 * 109.52657 * 103.43557 * 5 4 2 30 30 H 1.08006 * 118.32557 * 168.91328 * 6 5 4 31 31 H 1.07996 * 119.96534 * 359.95425 * 9 8 7 32 32 H 1.07999 * 119.36047 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.08554 * 179.97438 * 13 11 10 34 34 H 0.97000 * 120.00754 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.31072 * 220.72194 * 23 7 6 36 36 H 1.08994 * 109.31088 * 101.29958 * 23 7 6 37 37 H 1.08995 * 109.76136 * 237.19674 * 24 4 2 38 38 H 1.09006 * 109.75683 * 357.94980 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4756 -2.4567 -0.0017 6 6 2.1448 -3.3858 0.9728 7 6 3.3101 -3.1315 1.5325 8 6 3.8624 -4.1345 2.4562 9 6 4.9176 -4.9577 2.0610 10 6 5.4277 -5.8936 2.9345 11 6 4.9115 -6.0406 4.2176 12 9 5.4404 -6.9699 5.0433 13 6 3.8717 -5.2569 4.6602 14 6 3.3181 -4.2815 3.8084 15 6 2.2574 -3.4664 4.2464 16 1 1.5827 -3.0255 3.5275 17 6 2.0768 -3.2271 5.6148 18 7 3.0378 -3.4996 6.4586 19 14 0.4631 -2.5187 6.2342 20 1 -0.6489 -3.4373 5.8809 21 1 0.5257 -2.3608 7.7095 22 1 0.2300 -1.1941 5.6046 23 6 4.1105 -1.8863 1.2898 24 6 3.6535 -1.2012 -0.0011 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 0.4376 -2.3044 0.2942 29 1 1.5106 -2.8902 -1.0011 30 1 1.6446 -4.3086 1.2271 31 1 5.3346 -4.8615 1.0695 32 1 6.2446 -6.5245 2.6169 33 1 3.4839 -5.3859 5.6598 34 1 2.9128 -3.3343 7.4062 35 1 5.1656 -2.1466 1.2057 36 1 3.9765 -1.2026 2.1281 37 1 4.0088 -1.7650 -0.8636 38 1 4.0455 -0.1847 -0.0377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241969568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:40 Heat of formation + Delta-G solvation = -56.994113 kcal Electronic energy + Delta-G solvation = -22727.849704 eV Core-core repulsion = 19256.073467 eV Total energy + Delta-G solvation = -3471.776237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.68573 -39.88052 -37.83893 -36.46004 -33.91222 -33.04535 -31.25871 -29.80788 -29.47563 -28.34042 -25.86678 -24.51997 -23.14463 -21.25295 -20.83561 -19.70625 -17.67514 -17.32452 -16.78681 -15.96084 -15.75781 -15.28517 -14.98075 -14.72212 -14.59738 -14.33734 -13.79845 -13.37388 -13.24657 -13.06631 -12.83315 -12.65873 -12.46302 -12.17709 -12.09572 -11.98200 -11.70322 -11.35430 -11.23413 -11.11414 -10.73327 -10.61818 -10.42535 -9.88354 -9.77831 -9.68638 -9.38374 -8.49668 -8.13570 -7.68946 -7.24006 -6.95559 -4.60242 2.41415 2.66059 2.76358 2.91040 2.94812 2.96195 3.08193 3.16968 3.74893 4.36820 4.70507 5.15023 5.22096 5.25624 5.34350 5.41633 5.46540 5.53323 5.64071 5.65602 5.68072 5.82793 6.00943 6.04545 6.14053 6.27939 6.41982 6.47659 6.66793 6.82536 6.88244 7.01279 7.06700 7.36892 7.56490 7.59130 7.64843 7.73210 7.83576 8.03719 8.29621 8.38377 8.60021 8.70172 9.92035 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.006275 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.315171 B = 4460.749796 C = 6020.308183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.515 3.485 3 O -0.557 6.557 4 N -0.610 5.610 5 C 0.150 3.850 6 C -0.213 4.213 7 C 0.005 3.995 8 C -0.206 4.206 9 C -0.046 4.046 10 C -0.288 4.288 11 C 0.114 3.886 12 F -0.169 7.169 13 C -0.212 4.212 14 C 0.148 3.852 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.777 5.777 19 Si 0.911 3.089 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.097 4.097 24 C 0.113 3.887 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.286 0.714 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 1.937 -8.807 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.436 6.436 4 N -0.344 5.344 5 C 0.028 3.972 6 C -0.232 4.232 7 C 0.004 3.996 8 C -0.207 4.207 9 C -0.065 4.065 10 C -0.308 4.308 11 C 0.095 3.905 12 F -0.149 7.149 13 C -0.232 4.232 14 C 0.144 3.856 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.148 4.148 18 N -0.400 5.400 19 Si 0.735 3.265 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.135 4.135 24 C -0.010 4.010 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.430 2.489 -8.506 9.908 hybrid contribution -0.480 -0.095 0.745 0.892 sum -4.911 2.394 -7.760 9.491 Atomic orbital electron populations 1.21937 0.92084 1.05083 1.04207 1.20701 0.90552 0.82906 0.75407 1.90678 1.70871 1.31080 1.50947 1.48227 1.07326 1.06079 1.72765 1.20516 0.96039 0.82068 0.98581 1.22537 0.97807 1.00992 1.01817 1.19208 0.93820 0.93170 0.93370 1.19780 1.02151 1.02463 0.96344 1.20281 0.94795 0.94571 0.96827 1.20016 1.07926 1.08311 0.94578 1.17732 0.95597 0.89020 0.88158 1.91330 1.86123 1.64885 1.72516 1.21228 1.00348 0.98880 1.02722 1.18313 0.89802 0.88874 0.88579 1.19548 1.10243 1.24634 0.91904 0.89451 1.26076 0.97773 0.93954 0.96955 1.69769 1.31234 1.34144 1.04855 0.86292 0.81744 0.80329 0.78149 1.18462 1.20062 1.18659 1.20793 0.99688 0.95622 0.97391 1.21691 0.79410 1.02062 0.97812 0.89129 0.89312 0.89586 0.89614 0.91189 0.86474 0.88434 0.88487 0.85088 0.90226 0.90168 0.90132 0.91348 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 8.75 36.01 0.32 -1.50 16 2 C 0.52 7.75 7.83 -10.98 -0.09 7.66 16 3 O -0.56 -10.47 16.57 5.56 0.09 -10.38 16 4 N -0.61 -8.82 2.96 -174.14 -0.52 -9.34 16 5 C 0.15 1.90 6.49 -5.10 -0.03 1.87 16 6 C -0.21 -3.47 8.70 -36.36 -0.32 -3.78 16 7 C 0.00 0.09 4.47 -103.25 -0.46 -0.38 16 8 C -0.21 -4.49 5.20 -102.48 -0.53 -5.03 16 9 C -0.05 -0.97 9.78 -39.25 -0.38 -1.35 16 10 C -0.29 -6.39 9.95 -39.43 -0.39 -6.78 16 11 C 0.11 2.76 7.25 -39.53 -0.29 2.48 16 12 F -0.17 -4.00 17.24 2.25 0.04 -3.96 16 13 C -0.21 -5.39 8.66 -38.86 -0.34 -5.73 16 14 C 0.15 3.64 5.74 -104.63 -0.60 3.04 16 15 C -0.44 -10.53 8.55 -37.94 -0.32 -10.85 16 16 H 0.09 2.02 6.70 -52.48 -0.35 1.67 16 17 C 0.07 1.72 5.20 -17.31 -0.09 1.63 16 18 N -0.78 -19.09 10.84 55.55 0.60 -18.49 16 19 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 23 C -0.10 -1.64 5.95 -28.16 -0.17 -1.81 16 24 C 0.11 1.64 6.49 -3.54 -0.02 1.62 16 25 H 0.09 0.89 7.57 -51.93 -0.39 0.50 16 26 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.09 0.92 6.24 -51.92 -0.32 0.59 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.12 1.98 7.95 -52.48 -0.42 1.56 16 31 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.13 3.48 6.11 -52.49 -0.32 3.16 16 34 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 35 H 0.08 1.28 8.13 -51.93 -0.42 0.85 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.36 7.07 -51.93 -0.37 1.00 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -28.42 322.38 -8.36 -36.78 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.69 Total: 6.89 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.72 Total: -18.92 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.09 Total: -27.83 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.42 -8.36 -36.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241969568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.214 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds