Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21277 * 119.99592 * 2 1 4 4 N 1.34770 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.46983 * 121.32771 * 0.02562 * 4 2 1 6 6 C 1.50347 * 109.15236 * 223.34337 * 5 4 2 7 7 C 1.31753 * 123.34815 * 348.92707 * 6 5 4 8 8 C 1.47114 * 117.85318 * 180.80637 * 7 6 5 9 9 C 1.39538 * 120.55420 * 105.00289 * 8 7 6 10 10 C 1.37807 * 120.07027 * 179.97438 * 9 8 7 11 11 C 1.39079 * 121.27834 * 359.97200 * 10 9 8 12 12 F 1.35096 * 119.42723 * 180.02562 * 11 10 9 13 13 C 1.37525 * 121.14653 * 0.05017 * 11 10 9 14 14 C 1.40837 * 119.82150 * 359.68783 * 13 11 10 15 15 C 1.40758 * 120.60339 * 180.27682 * 14 13 11 16 16 H 1.08003 * 120.00123 * 204.85576 * 15 14 13 17 17 C 1.40086 * 120.00212 * 24.85169 * 15 14 13 18 18 N 1.30762 * 120.00019 * 15.20473 * 17 15 14 19 19 Si 1.86798 * 120.00064 * 195.20805 * 17 15 14 20 20 H 1.48497 * 109.47686 * 60.00004 * 19 17 15 21 21 H 1.48501 * 109.47162 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46960 * 299.99545 * 19 17 15 23 23 C 1.50000 * 124.29325 * 0.81023 * 7 6 5 24 24 C 1.47300 * 121.32032 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.46786 * 239.99395 * 1 2 3 26 26 H 1.09003 * 109.46917 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46883 * 119.99941 * 1 2 3 28 28 H 1.09008 * 109.51964 * 343.24428 * 5 4 2 29 29 H 1.08996 * 109.52657 * 103.43557 * 5 4 2 30 30 H 1.08006 * 118.32557 * 168.91328 * 6 5 4 31 31 H 1.07996 * 119.96534 * 359.95425 * 9 8 7 32 32 H 1.07999 * 119.36047 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.08554 * 179.97438 * 13 11 10 34 34 H 0.97000 * 120.00754 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.31072 * 220.72194 * 23 7 6 36 36 H 1.08994 * 109.31088 * 101.29958 * 23 7 6 37 37 H 1.08995 * 109.76136 * 237.19674 * 24 4 2 38 38 H 1.09006 * 109.75683 * 357.94980 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4756 -2.4567 -0.0017 6 6 2.1448 -3.3858 0.9728 7 6 3.3101 -3.1315 1.5325 8 6 3.8624 -4.1345 2.4562 9 6 4.9176 -4.9577 2.0610 10 6 5.4277 -5.8936 2.9345 11 6 4.9115 -6.0406 4.2176 12 9 5.4404 -6.9699 5.0433 13 6 3.8717 -5.2569 4.6602 14 6 3.3181 -4.2815 3.8084 15 6 2.2574 -3.4664 4.2464 16 1 1.5827 -3.0255 3.5275 17 6 2.0768 -3.2271 5.6148 18 7 3.0378 -3.4996 6.4586 19 14 0.4631 -2.5187 6.2342 20 1 -0.6489 -3.4373 5.8809 21 1 0.5257 -2.3608 7.7095 22 1 0.2300 -1.1941 5.6046 23 6 4.1105 -1.8863 1.2898 24 6 3.6535 -1.2012 -0.0011 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 0.4376 -2.3044 0.2942 29 1 1.5106 -2.8902 -1.0011 30 1 1.6446 -4.3086 1.2271 31 1 5.3346 -4.8615 1.0695 32 1 6.2446 -6.5245 2.6169 33 1 3.4839 -5.3859 5.6598 34 1 2.9128 -3.3343 7.4062 35 1 5.1656 -2.1466 1.2057 36 1 3.9765 -1.2026 2.1281 37 1 4.0088 -1.7650 -0.8636 38 1 4.0455 -0.1847 -0.0377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241969568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = -71.270018 kcal Electronic energy + Delta-G solvation = -22728.468754 eV Core-core repulsion = 19256.073467 eV Total energy + Delta-G solvation = -3472.395287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.57007 -41.05509 -39.39913 -37.89020 -35.66306 -34.41233 -32.45302 -31.58648 -30.66708 -29.74604 -27.54305 -25.90809 -24.35710 -23.04349 -22.44899 -20.95180 -19.47846 -18.55225 -18.06823 -17.74662 -16.92829 -16.69911 -16.48176 -16.37767 -16.23029 -16.07453 -15.04362 -14.78967 -14.58601 -14.49404 -14.27105 -13.93751 -13.72492 -13.71987 -13.39430 -13.17242 -12.99246 -12.81809 -12.71990 -12.61512 -12.24528 -12.18170 -12.07276 -11.53786 -11.40112 -11.12924 -10.87405 -9.71184 -9.52539 -9.48574 -8.98664 -8.71280 -6.43515 0.66193 0.95094 1.35369 1.45610 1.46652 1.51079 1.65585 2.10838 2.13494 2.60223 3.47887 3.70815 3.82713 4.00239 4.13651 4.20370 4.34835 4.44393 4.46677 4.51430 4.57881 4.67299 4.69969 4.75726 4.86496 4.94316 5.03466 5.08057 5.12507 5.17161 5.26630 5.50641 5.58428 5.62702 5.80321 5.95421 6.00601 6.22194 6.27268 6.52651 6.57280 6.79370 6.89522 7.18692 8.19203 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.006275 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.315171 B = 4460.749796 C = 6020.308183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.505 3.495 3 O -0.605 6.605 4 N -0.613 5.613 5 C 0.150 3.850 6 C -0.185 4.185 7 C -0.033 4.033 8 C -0.196 4.196 9 C -0.050 4.050 10 C -0.287 4.287 11 C 0.094 3.906 12 F -0.172 7.172 13 C -0.242 4.242 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.815 5.815 19 Si 0.979 3.021 20 H -0.251 1.251 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.087 4.087 24 C 0.117 3.883 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.291 0.709 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 2.208 -11.229 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.296 3.704 3 O -0.487 6.487 4 N -0.346 5.346 5 C 0.029 3.971 6 C -0.204 4.204 7 C -0.033 4.033 8 C -0.197 4.197 9 C -0.068 4.068 10 C -0.307 4.307 11 C 0.075 3.925 12 F -0.151 7.151 13 C -0.262 4.262 14 C 0.115 3.885 15 C -0.483 4.483 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.439 5.439 19 Si 0.799 3.201 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.125 4.125 24 C -0.005 4.005 25 H 0.120 0.880 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.273 2.726 -10.940 12.902 hybrid contribution 0.147 -0.244 1.421 1.449 sum -6.126 2.482 -9.518 11.588 Atomic orbital electron populations 1.21977 0.88319 1.06059 1.06244 1.21572 0.92402 0.82188 0.74207 1.90659 1.72187 1.32717 1.53131 1.48377 1.07253 1.06765 1.72178 1.20775 0.96621 0.80444 0.99272 1.22799 0.96117 1.01012 1.00473 1.19175 0.95588 0.93560 0.94959 1.20200 1.01481 1.02429 0.95618 1.20696 0.94383 0.93582 0.98100 1.20344 1.08095 1.08578 0.93671 1.17985 0.95971 0.89363 0.89202 1.91309 1.86114 1.64899 1.72791 1.21171 1.01951 1.00621 1.02450 1.18706 0.90605 0.89080 0.90072 1.19753 1.10745 1.25169 0.92673 0.88901 1.26956 1.00805 0.93961 0.96864 1.69852 1.33216 1.35558 1.05300 0.85274 0.77532 0.79666 0.77600 1.17453 1.19714 1.18136 1.20647 0.99945 0.94432 0.97497 1.21622 0.80086 1.01500 0.97314 0.88047 0.89118 0.86205 0.86701 0.87636 0.87052 0.84910 0.86281 0.87342 0.89857 0.89802 0.93376 0.88745 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.75 71.24 0.62 -2.23 16 2 C 0.50 13.97 7.83 87.66 0.69 14.65 16 3 O -0.60 -22.26 16.57 -3.02 -0.05 -22.31 16 4 N -0.61 -15.88 2.96 -823.27 -2.44 -18.31 16 5 C 0.15 3.11 6.49 85.43 0.55 3.67 16 6 C -0.19 -5.51 8.70 24.84 0.22 -5.29 16 7 C -0.03 -1.16 4.47 -18.48 -0.08 -1.24 16 8 C -0.20 -8.47 5.20 -18.48 -0.10 -8.57 16 9 C -0.05 -2.01 9.78 22.48 0.22 -1.79 16 10 C -0.29 -12.53 9.95 22.37 0.22 -12.31 16 11 C 0.09 4.66 7.25 22.30 0.16 4.82 16 12 F -0.17 -8.35 17.24 44.97 0.78 -7.57 16 13 C -0.24 -12.84 8.66 22.74 0.20 -12.65 16 14 C 0.12 5.98 5.74 -19.87 -0.11 5.87 16 15 C -0.46 -22.42 8.55 23.33 0.20 -22.23 16 16 H 0.09 4.29 6.70 -2.91 -0.02 4.27 16 17 C 0.03 1.49 5.20 85.30 0.44 1.93 16 18 N -0.81 -41.72 10.84 21.85 0.24 -41.49 16 19 Si 0.98 36.05 29.59 68.60 2.03 38.08 16 20 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.09 -2.88 5.95 29.67 0.18 -2.70 16 24 C 0.12 3.20 6.49 86.27 0.56 3.76 16 25 H 0.10 1.55 7.57 -2.39 -0.02 1.54 16 26 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.12 1.25 8.13 -2.38 -0.02 1.23 16 28 H 0.12 1.82 6.24 -2.38 -0.01 1.80 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 3.47 7.95 -2.91 -0.02 3.45 16 31 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.11 6.14 6.11 -2.91 -0.02 6.12 16 34 H 0.29 13.59 8.29 -92.71 -0.77 12.82 16 35 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.35 7.07 -2.38 -0.02 2.33 16 Total: -1.00 -65.00 322.38 5.60 -59.39 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.08 Total: 26.51 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 3.97 Total: -34.30 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -2.20 Total: -59.80 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.78 Total: -7.57 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -65.00 5.60 -59.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241969568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.877 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds