Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00516 * 2 1 4 4 N 1.34779 * 119.99647 * 180.02562 * 2 1 3 5 5 C 1.46994 * 121.34062 * 359.97438 * 4 2 1 6 6 C 1.50343 * 109.15886 * 223.26708 * 5 4 2 7 7 C 1.31097 * 123.43276 * 348.96177 * 6 5 4 8 8 C 1.47836 * 117.80613 * 180.81766 * 7 6 5 9 9 C 1.39882 * 120.00864 * 244.72278 * 8 7 6 10 10 C 1.38582 * 120.33256 * 179.71491 * 9 8 7 11 11 F 1.35098 * 119.82833 * 180.26564 * 10 9 8 12 12 C 1.37966 * 120.34447 * 0.56316 * 10 9 8 13 13 C 1.40728 * 120.01071 * 359.71950 * 12 10 9 14 14 C 1.41430 * 120.16432 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00347 * 150.16745 * 14 13 12 16 16 C 1.39928 * 119.99809 * 330.17103 * 14 13 12 17 17 N 1.30831 * 119.99768 * 161.72786 * 16 14 13 18 18 Si 1.86799 * 119.99907 * 341.72461 * 16 14 13 19 19 H 1.48501 * 109.46955 * 95.41687 * 18 16 14 20 20 H 1.48506 * 109.46734 * 215.41582 * 18 16 14 21 21 H 1.48494 * 109.47131 * 335.41436 * 18 16 14 22 22 C 1.38940 * 120.00833 * 65.00008 * 8 7 6 23 23 C 1.49988 * 124.38498 * 1.09980 * 7 6 5 24 24 C 1.47318 * 121.33703 * 180.02562 * 4 2 1 25 25 H 1.08992 * 109.46989 * 270.00078 * 1 2 3 26 26 H 1.09000 * 109.46758 * 30.00242 * 1 2 3 27 27 H 1.09002 * 109.47274 * 149.99893 * 1 2 3 28 28 H 1.09000 * 109.52172 * 103.36332 * 5 4 2 29 29 H 1.08996 * 109.51851 * 343.17153 * 5 4 2 30 30 H 1.07993 * 118.28138 * 168.93358 * 6 5 4 31 31 H 1.08001 * 119.83672 * 359.97438 * 9 8 7 32 32 H 1.08002 * 119.98897 * 179.74316 * 12 10 9 33 33 H 0.96998 * 119.99817 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.17342 * 0.02562 * 22 8 7 35 35 H 1.08996 * 109.31864 * 101.01951 * 23 7 6 36 36 H 1.09007 * 109.31242 * 220.44265 * 23 7 6 37 37 H 1.08998 * 109.76575 * 237.33477 * 24 4 2 38 38 H 1.08999 * 109.75945 * 358.10134 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4758 -2.4571 -0.0005 6 6 2.1469 -3.3862 0.9724 7 6 3.3070 -3.1346 1.5286 8 6 3.8614 -4.1448 2.4547 9 6 4.0310 -3.8348 3.8082 10 6 4.5445 -4.7786 4.6833 11 9 4.6990 -4.4701 5.9895 12 6 4.9046 -6.0297 4.2265 13 6 4.7457 -6.3551 2.8666 14 6 5.1133 -7.6367 2.3949 15 1 4.5954 -8.0712 1.5527 16 6 6.1479 -8.3419 3.0196 17 7 6.2603 -9.6331 2.8411 18 14 7.3687 -7.4397 4.1082 19 1 6.9355 -7.5383 5.5252 20 1 8.7131 -8.0524 3.9577 21 1 7.4281 -6.0112 3.7070 22 6 4.2195 -5.4005 1.9799 23 6 4.1067 -1.8877 1.2931 24 6 3.6536 -1.2017 0.0000 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.5090 -2.8903 -1.0002 29 1 0.4384 -2.3050 0.2973 30 1 1.6469 -4.3091 1.2266 31 1 3.7564 -2.8564 4.1738 32 1 5.3082 -6.7594 4.9128 33 1 6.9773 -10.1220 3.2744 34 1 4.0945 -5.6415 0.9346 35 1 3.9696 -1.2073 2.1335 36 1 5.1624 -2.1466 1.2110 37 1 4.0095 -1.7633 -0.8637 38 1 4.0460 -0.1854 -0.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241970397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -55.430025 kcal Electronic energy + Delta-G solvation = -22197.099594 eV Core-core repulsion = 18725.391180 eV Total energy + Delta-G solvation = -3471.708413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.00322 -40.19200 -38.30962 -36.93147 -34.21151 -33.09918 -31.61991 -30.45418 -29.61594 -28.85705 -25.51916 -25.33033 -23.50579 -21.68539 -20.77759 -20.09625 -18.13157 -17.49776 -16.75733 -16.23091 -15.93284 -15.52424 -15.19879 -15.05674 -14.77598 -14.59656 -14.21847 -14.07563 -13.66088 -13.44814 -13.19868 -12.96806 -12.60955 -12.24211 -12.20647 -12.08248 -11.91628 -11.63247 -11.54568 -11.13555 -10.93175 -10.72352 -10.41566 -10.09468 -9.95490 -9.87169 -9.29301 -8.85150 -8.67827 -7.80622 -7.62212 -7.12659 -4.71161 1.99709 2.33297 2.50992 2.56649 2.89120 3.03483 3.11158 3.22089 3.86132 4.21590 4.44561 4.76976 4.94047 5.01373 5.04334 5.08083 5.17178 5.22506 5.32380 5.40442 5.42857 5.59202 5.69044 5.77310 5.92115 5.98807 6.05354 6.21266 6.30392 6.37243 6.59890 6.61316 6.88556 7.06235 7.24513 7.25077 7.34173 7.40604 7.58229 7.88239 8.04234 8.15127 8.39861 8.59268 9.88525 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.003935 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.576190 B = 7113.802937 C = 7551.751469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.515 3.485 3 O -0.554 6.554 4 N -0.614 5.614 5 C 0.145 3.855 6 C -0.189 4.189 7 C -0.043 4.043 8 C -0.011 4.011 9 C -0.264 4.264 10 C 0.133 3.867 11 F -0.162 7.162 12 C -0.275 4.275 13 C 0.110 3.890 14 C -0.439 4.439 15 H 0.096 0.904 16 C 0.086 3.914 17 N -0.798 5.798 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.243 1.243 22 C -0.195 4.195 23 C -0.096 4.096 24 C 0.112 3.888 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.288 0.712 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 10.614 -5.249 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.432 6.432 4 N -0.348 5.348 5 C 0.023 3.977 6 C -0.207 4.207 7 C -0.043 4.043 8 C -0.011 4.011 9 C -0.285 4.285 10 C 0.114 3.886 11 F -0.141 7.141 12 C -0.295 4.295 13 C 0.107 3.893 14 C -0.467 4.467 15 H 0.114 0.886 16 C -0.135 4.135 17 N -0.420 5.420 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.167 1.167 22 C -0.214 4.214 23 C -0.134 4.134 24 C -0.011 4.011 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.030 10.895 -5.210 13.974 hybrid contribution 0.617 -0.085 0.932 1.121 sum -6.413 10.810 -4.278 13.277 Atomic orbital electron populations 1.21950 0.91868 1.04756 1.04857 1.20747 0.90602 0.82853 0.75335 1.90697 1.70774 1.31030 1.50708 1.48298 1.07383 1.06046 1.73075 1.20595 0.96155 0.82056 0.98926 1.22527 0.97112 1.00834 1.00247 1.19620 0.94507 0.94412 0.95794 1.18390 0.97882 0.93156 0.91677 1.20247 1.15824 0.99256 0.93125 1.17425 0.99980 0.94488 0.76712 1.91366 1.93881 1.93781 1.35104 1.21048 1.15179 0.96233 0.97034 1.17402 0.89659 0.92535 0.89693 1.19506 1.15064 0.97742 1.14369 0.88597 1.26182 0.98438 0.94329 0.94534 1.69682 1.29025 1.07774 1.35566 0.86341 0.78220 0.81977 0.80070 1.19400 1.21394 1.16656 1.21159 1.09611 0.92167 0.98477 1.20757 1.00225 0.94645 0.97749 1.21727 0.79279 1.02360 0.97694 0.88783 0.89028 0.89897 0.90353 0.88961 0.85848 0.87711 0.87106 0.90103 0.87341 0.90340 0.89418 0.90757 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.40 36.01 0.34 -1.03 16 2 C 0.52 6.36 7.83 -10.98 -0.09 6.27 16 3 O -0.55 -9.02 16.58 5.56 0.09 -8.93 16 4 N -0.61 -7.21 2.96 -174.07 -0.52 -7.73 16 5 C 0.14 1.43 6.25 -5.10 -0.03 1.40 16 6 C -0.19 -2.48 9.45 -36.22 -0.34 -2.82 16 7 C -0.04 -0.67 5.27 -102.78 -0.54 -1.21 16 8 C -0.01 -0.21 5.07 -105.10 -0.53 -0.74 16 9 C -0.26 -5.44 9.70 -38.84 -0.38 -5.82 16 10 C 0.13 3.01 7.28 -39.55 -0.29 2.72 16 11 F -0.16 -3.56 17.26 2.25 0.04 -3.53 16 12 C -0.27 -6.59 7.14 -38.74 -0.28 -6.87 16 13 C 0.11 2.65 5.10 -106.88 -0.55 2.11 16 14 C -0.44 -11.19 9.57 -37.73 -0.36 -11.55 16 15 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.09 2.15 5.40 -17.35 -0.09 2.06 16 17 N -0.80 -20.30 13.93 55.55 0.77 -19.53 16 18 Si 0.91 20.32 24.52 -169.99 -4.17 16.15 16 19 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 20 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 22 C -0.19 -4.15 9.39 -38.46 -0.36 -4.51 16 23 C -0.10 -1.32 5.90 -28.11 -0.17 -1.49 16 24 C 0.11 1.37 6.50 -3.48 -0.02 1.34 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.46 6.45 -51.93 -0.34 0.13 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.69 5.99 -51.93 -0.31 0.38 16 30 H 0.12 1.66 7.94 -52.49 -0.42 1.24 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.11 2.70 4.72 -52.49 -0.25 2.45 16 33 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 34 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.20 7.07 -51.93 -0.37 0.83 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -28.80 318.65 -7.32 -36.11 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.65 Total: 2.79 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.69 Total: -20.14 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.26 Total: -27.26 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.17 Total: 16.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.80 -7.32 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241970397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.317 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds