Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00516 * 2 1 4 4 N 1.34779 * 119.99647 * 180.02562 * 2 1 3 5 5 C 1.46994 * 121.34062 * 359.97438 * 4 2 1 6 6 C 1.50343 * 109.15886 * 223.26708 * 5 4 2 7 7 C 1.31097 * 123.43276 * 348.96177 * 6 5 4 8 8 C 1.47836 * 117.80613 * 180.81766 * 7 6 5 9 9 C 1.39882 * 120.00864 * 244.72278 * 8 7 6 10 10 C 1.38582 * 120.33256 * 179.71491 * 9 8 7 11 11 F 1.35098 * 119.82833 * 180.26564 * 10 9 8 12 12 C 1.37966 * 120.34447 * 0.56316 * 10 9 8 13 13 C 1.40728 * 120.01071 * 359.71950 * 12 10 9 14 14 C 1.41430 * 120.16432 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00347 * 150.16745 * 14 13 12 16 16 C 1.39928 * 119.99809 * 330.17103 * 14 13 12 17 17 N 1.30831 * 119.99768 * 161.72786 * 16 14 13 18 18 Si 1.86799 * 119.99907 * 341.72461 * 16 14 13 19 19 H 1.48501 * 109.46955 * 95.41687 * 18 16 14 20 20 H 1.48506 * 109.46734 * 215.41582 * 18 16 14 21 21 H 1.48494 * 109.47131 * 335.41436 * 18 16 14 22 22 C 1.38940 * 120.00833 * 65.00008 * 8 7 6 23 23 C 1.49988 * 124.38498 * 1.09980 * 7 6 5 24 24 C 1.47318 * 121.33703 * 180.02562 * 4 2 1 25 25 H 1.08992 * 109.46989 * 270.00078 * 1 2 3 26 26 H 1.09000 * 109.46758 * 30.00242 * 1 2 3 27 27 H 1.09002 * 109.47274 * 149.99893 * 1 2 3 28 28 H 1.09000 * 109.52172 * 103.36332 * 5 4 2 29 29 H 1.08996 * 109.51851 * 343.17153 * 5 4 2 30 30 H 1.07993 * 118.28138 * 168.93358 * 6 5 4 31 31 H 1.08001 * 119.83672 * 359.97438 * 9 8 7 32 32 H 1.08002 * 119.98897 * 179.74316 * 12 10 9 33 33 H 0.96998 * 119.99817 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.17342 * 0.02562 * 22 8 7 35 35 H 1.08996 * 109.31864 * 101.01951 * 23 7 6 36 36 H 1.09007 * 109.31242 * 220.44265 * 23 7 6 37 37 H 1.08998 * 109.76575 * 237.33477 * 24 4 2 38 38 H 1.08999 * 109.75945 * 358.10134 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4758 -2.4571 -0.0005 6 6 2.1469 -3.3862 0.9724 7 6 3.3070 -3.1346 1.5286 8 6 3.8614 -4.1448 2.4547 9 6 4.0310 -3.8348 3.8082 10 6 4.5445 -4.7786 4.6833 11 9 4.6990 -4.4701 5.9895 12 6 4.9046 -6.0297 4.2265 13 6 4.7457 -6.3551 2.8666 14 6 5.1133 -7.6367 2.3949 15 1 4.5954 -8.0712 1.5527 16 6 6.1479 -8.3419 3.0196 17 7 6.2603 -9.6331 2.8411 18 14 7.3687 -7.4397 4.1082 19 1 6.9355 -7.5383 5.5252 20 1 8.7131 -8.0524 3.9577 21 1 7.4281 -6.0112 3.7070 22 6 4.2195 -5.4005 1.9799 23 6 4.1067 -1.8877 1.2931 24 6 3.6536 -1.2017 0.0000 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.5090 -2.8903 -1.0002 29 1 0.4384 -2.3050 0.2973 30 1 1.6469 -4.3091 1.2266 31 1 3.7564 -2.8564 4.1738 32 1 5.3082 -6.7594 4.9128 33 1 6.9773 -10.1220 3.2744 34 1 4.0945 -5.6415 0.9346 35 1 3.9696 -1.2073 2.1335 36 1 5.1624 -2.1466 1.2110 37 1 4.0095 -1.7633 -0.8637 38 1 4.0460 -0.1854 -0.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241970397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -71.154161 kcal Electronic energy + Delta-G solvation = -22197.781443 eV Core-core repulsion = 18725.391180 eV Total energy + Delta-G solvation = -3472.390263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.77452 -41.16906 -39.80545 -38.20375 -35.81614 -34.52092 -32.60978 -32.12092 -30.84106 -29.98109 -27.31130 -26.47351 -24.52265 -23.21493 -22.55104 -21.13896 -19.72041 -18.49790 -18.28368 -17.62187 -17.06249 -16.85971 -16.74752 -16.54053 -16.39472 -16.35684 -15.38929 -15.21638 -15.03101 -14.64910 -14.32434 -14.01798 -13.94129 -13.71860 -13.45103 -13.31429 -13.07427 -12.92416 -12.84024 -12.67698 -12.52667 -12.11335 -12.03459 -11.86137 -11.61788 -11.08339 -10.90829 -10.01761 -9.70926 -9.57207 -9.26086 -9.00480 -6.63434 0.43214 0.55137 1.19721 1.26320 1.31763 1.41863 1.62008 2.03352 2.04317 2.41587 3.26115 3.45474 3.66351 3.81597 4.02706 4.09205 4.18122 4.26933 4.32858 4.42386 4.50185 4.57433 4.62245 4.67576 4.72197 4.77424 4.80930 4.84521 5.01439 5.07211 5.16111 5.39226 5.44026 5.49818 5.55546 5.66290 5.73604 5.94388 6.10952 6.26276 6.46435 6.56202 6.70696 7.14880 8.06389 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.003935 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.576190 B = 7113.802937 C = 7551.751469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.603 6.603 4 N -0.616 5.616 5 C 0.143 3.857 6 C -0.157 4.157 7 C -0.079 4.079 8 C 0.005 3.995 9 C -0.252 4.252 10 C 0.119 3.881 11 F -0.160 7.160 12 C -0.293 4.293 13 C 0.100 3.900 14 C -0.470 4.470 15 H 0.074 0.926 16 C 0.058 3.942 17 N -0.833 5.833 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.255 1.255 22 C -0.198 4.198 23 C -0.088 4.088 24 C 0.114 3.886 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.297 0.703 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 12.312 -6.050 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.484 6.484 4 N -0.349 5.349 5 C 0.022 3.978 6 C -0.176 4.176 7 C -0.079 4.079 8 C 0.005 3.995 9 C -0.272 4.272 10 C 0.100 3.900 11 F -0.139 7.139 12 C -0.313 4.313 13 C 0.097 3.903 14 C -0.499 4.499 15 H 0.093 0.907 16 C -0.159 4.159 17 N -0.458 5.458 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.179 1.179 22 C -0.217 4.217 23 C -0.125 4.125 24 C -0.008 4.008 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.836 12.567 -6.012 16.498 hybrid contribution 1.004 -0.464 1.151 1.596 sum -7.832 12.104 -4.861 15.214 Atomic orbital electron populations 1.21996 0.88105 1.06506 1.06135 1.21597 0.92385 0.82078 0.74042 1.90678 1.72104 1.32730 1.52931 1.48429 1.07149 1.06776 1.72498 1.20884 0.97117 0.80451 0.99312 1.22841 0.95643 1.00828 0.98264 1.19510 0.96203 0.94685 0.97493 1.18714 0.95723 0.93168 0.91889 1.20638 1.13671 0.99478 0.93397 1.17601 1.00545 0.94591 0.77219 1.91367 1.93908 1.93688 1.34928 1.21071 1.16311 0.96902 0.97040 1.17530 0.90027 0.92613 0.90167 1.19499 1.16483 0.99098 1.14821 0.90742 1.26659 0.99224 0.94719 0.95315 1.69691 1.30293 1.08495 1.37287 0.85683 0.77604 0.80419 0.78744 1.19489 1.19548 1.17927 1.21354 1.09058 0.92598 0.98724 1.20641 0.99820 0.93791 0.98283 1.21644 0.80156 1.01752 0.97297 0.87523 0.88571 0.86971 0.87652 0.85446 0.85819 0.85660 0.88084 0.89245 0.86260 0.91234 0.89933 0.89399 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.40 71.24 0.67 -1.24 16 2 C 0.51 11.04 7.83 87.66 0.69 11.72 16 3 O -0.60 -18.88 16.58 -3.02 -0.05 -18.93 16 4 N -0.62 -12.31 2.96 -823.02 -2.44 -14.74 16 5 C 0.14 2.10 6.25 85.43 0.53 2.63 16 6 C -0.16 -3.51 9.45 25.44 0.24 -3.27 16 7 C -0.08 -2.21 5.27 -17.68 -0.09 -2.31 16 8 C 0.01 0.20 5.07 -20.17 -0.10 0.10 16 9 C -0.25 -9.90 9.70 22.75 0.22 -9.68 16 10 C 0.12 5.30 7.28 22.29 0.16 5.46 16 11 F -0.16 -6.87 17.26 44.97 0.78 -6.09 16 12 C -0.29 -14.14 7.14 22.81 0.16 -13.97 16 13 C 0.10 4.83 5.10 -21.33 -0.11 4.72 16 14 C -0.47 -24.79 9.57 23.47 0.22 -24.56 16 15 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 16 C 0.06 2.99 5.40 85.25 0.46 3.45 16 17 N -0.83 -43.58 13.93 21.82 0.30 -43.27 16 18 Si 0.95 42.44 24.52 68.60 1.68 44.12 16 19 H -0.27 -11.89 6.71 99.48 0.67 -11.22 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.26 -11.75 6.86 99.48 0.68 -11.07 16 22 C -0.20 -8.30 9.39 22.99 0.22 -8.08 16 23 C -0.09 -2.24 5.90 29.70 0.18 -2.07 16 24 C 0.11 2.54 6.50 86.30 0.56 3.10 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 0.60 6.45 -2.39 -0.02 0.58 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.13 1.08 5.99 -2.39 -0.01 1.07 16 30 H 0.12 2.83 7.94 -2.91 -0.02 2.80 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.10 5.00 4.72 -2.91 -0.01 4.99 16 33 H 0.30 13.98 8.30 -92.71 -0.77 13.21 16 34 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.15 8.13 -2.38 -0.02 2.13 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.06 7.07 -2.39 -0.02 2.04 16 Total: -1.00 -64.27 318.65 5.30 -58.97 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.02 Total: 13.95 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.01 Total: -33.99 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -2.13 Total: -58.02 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.78 Total: -6.09 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.68 Total: 44.12 kcal Total: -64.27 5.30 -58.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241970397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.189 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds