Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 119.99904 * 2 1 4 4 N 1.34774 * 120.00241 * 179.97438 * 2 1 3 5 5 C 1.46989 * 121.31890 * 0.02562 * 4 2 1 6 6 C 1.50352 * 109.18528 * 223.11972 * 5 4 2 7 7 C 1.31702 * 123.36108 * 349.41926 * 6 5 4 8 8 C 1.47158 * 117.85164 * 180.53017 * 7 6 5 9 9 C 1.39454 * 120.56303 * 104.71732 * 8 7 6 10 10 C 1.37942 * 120.10980 * 180.02562 * 9 8 7 11 11 C 1.38701 * 121.34291 * 359.97238 * 10 9 8 12 12 C 1.37615 * 121.16791 * 359.78283 * 11 10 9 13 13 F 1.35099 * 120.11420 * 180.23980 * 12 11 10 14 14 C 1.41150 * 119.77338 * 0.48028 * 12 11 10 15 15 C 1.40678 * 120.63390 * 179.79007 * 14 12 11 16 16 H 1.08001 * 120.00482 * 143.48450 * 15 14 12 17 17 C 1.40112 * 119.99627 * 323.20812 * 15 14 12 18 18 N 1.30773 * 120.00145 * 340.73146 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 160.74227 * 17 15 14 20 20 H 1.48502 * 109.47321 * 89.99282 * 19 17 15 21 21 H 1.48497 * 109.47256 * 209.99519 * 19 17 15 22 22 H 1.48501 * 109.47137 * 329.99884 * 19 17 15 23 23 C 1.50003 * 124.29960 * 0.24860 * 7 6 5 24 24 C 1.47307 * 121.32596 * 180.02562 * 4 2 1 25 25 H 1.08997 * 109.47203 * 240.00224 * 1 2 3 26 26 H 1.09002 * 109.47298 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47257 * 119.99996 * 1 2 3 28 28 H 1.08993 * 109.52748 * 343.23431 * 5 4 2 29 29 H 1.08994 * 109.52260 * 103.43543 * 5 4 2 30 30 H 1.08003 * 118.31590 * 169.16472 * 6 5 4 31 31 H 1.07997 * 119.94475 * 359.97438 * 9 8 7 32 32 H 1.07991 * 119.32904 * 180.02562 * 10 9 8 33 33 H 1.07996 * 119.41409 * 180.02562 * 11 10 9 34 34 H 0.96990 * 120.00301 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.30762 * 101.58151 * 23 7 6 36 36 H 1.08996 * 109.31203 * 221.00580 * 23 7 6 37 37 H 1.09003 * 109.75788 * 357.96411 * 24 4 2 38 38 H 1.08995 * 109.75700 * 237.20733 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4755 -2.4567 0.0005 6 6 2.1473 -3.3874 0.9716 7 6 3.3097 -3.1304 1.5350 8 6 3.8622 -4.1331 2.4596 9 6 4.9163 -4.9566 2.0654 10 6 5.4266 -5.8938 2.9395 11 6 4.9130 -6.0416 4.2194 12 6 3.8765 -5.2543 4.6662 13 9 3.3958 -5.4132 5.9187 14 6 3.3139 -4.2836 3.8096 15 6 2.2510 -3.4721 4.2461 16 1 2.1956 -2.4400 3.9328 17 6 1.2611 -4.0043 5.0827 18 7 1.0963 -5.2994 5.1589 19 14 0.1765 -2.8641 6.0892 20 1 -1.0310 -2.5068 5.3020 21 1 -0.2336 -3.5486 7.3415 22 1 0.9319 -1.6301 6.4240 23 6 4.1103 -1.8855 1.2915 24 6 3.6535 -1.2012 0.0011 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 0.4376 -2.3043 0.2964 29 1 1.5105 -2.8910 -0.9985 30 1 1.6493 -4.3122 1.2231 31 1 5.3332 -4.8611 1.0737 32 1 6.2433 -6.5246 2.6211 33 1 5.3365 -6.7851 4.8783 34 1 0.4113 -5.6679 5.7383 35 1 3.9764 -1.2012 2.1293 36 1 5.1653 -2.1461 1.2075 37 1 4.0456 -0.1848 -0.0354 38 1 4.0094 -1.7653 -0.8610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241970498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = -62.771324 kcal Electronic energy + Delta-G solvation = -23028.863765 eV Core-core repulsion = 19556.837009 eV Total energy + Delta-G solvation = -3472.026756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.93356 -41.06886 -39.31990 -37.85071 -35.54028 -34.49299 -32.47600 -31.44373 -30.77475 -29.84859 -27.33674 -26.02279 -24.37502 -22.76675 -22.53531 -20.96271 -19.32149 -18.60612 -18.20540 -17.20297 -17.09042 -16.76858 -16.38453 -16.34482 -15.99788 -15.66586 -15.19267 -15.00585 -14.57281 -14.52810 -14.17979 -13.85961 -13.70038 -13.35635 -13.24353 -13.16372 -13.04944 -12.93403 -12.70506 -12.47136 -12.41167 -12.37311 -11.96577 -11.75057 -11.20661 -10.95716 -10.89012 -9.73730 -9.51756 -9.20114 -9.02075 -8.70714 -6.36883 0.69954 0.95434 1.33174 1.41813 1.44612 1.47541 1.63307 2.08724 2.16576 2.70450 3.42440 3.68760 3.92290 4.07854 4.17664 4.23410 4.33310 4.37274 4.45303 4.49267 4.60815 4.65027 4.67927 4.74455 4.84251 4.89753 4.94738 5.06873 5.11981 5.16416 5.29510 5.49288 5.57163 5.66262 5.81676 5.99770 6.03777 6.23070 6.30832 6.48488 6.51451 6.81490 6.96281 7.16339 8.28630 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.006656 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.024773 B = 4205.490536 C = 5647.781516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.507 3.493 3 O -0.602 6.602 4 N -0.613 5.613 5 C 0.151 3.849 6 C -0.173 4.173 7 C -0.041 4.041 8 C -0.157 4.157 9 C -0.090 4.090 10 C -0.210 4.210 11 C -0.139 4.139 12 C -0.016 4.016 13 F -0.162 7.162 14 C 0.073 3.927 15 C -0.474 4.474 16 H 0.074 0.926 17 C 0.043 3.957 18 N -0.808 5.808 19 Si 0.963 3.037 20 H -0.251 1.251 21 H -0.272 1.272 22 H -0.266 1.266 23 C -0.087 4.087 24 C 0.117 3.883 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.287 0.713 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 3.178 -10.238 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.484 6.484 4 N -0.345 5.345 5 C 0.030 3.970 6 C -0.192 4.192 7 C -0.041 4.041 8 C -0.158 4.158 9 C -0.108 4.108 10 C -0.229 4.229 11 C -0.158 4.158 12 C -0.036 4.036 13 F -0.141 7.141 14 C 0.070 3.930 15 C -0.502 4.502 16 H 0.092 0.908 17 C -0.174 4.174 18 N -0.432 5.432 19 Si 0.785 3.215 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.190 1.190 23 C -0.124 4.124 24 C -0.006 4.006 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.614 3.511 -10.092 10.807 hybrid contribution -0.397 -0.162 1.498 1.558 sum -2.011 3.349 -8.594 9.440 Atomic orbital electron populations 1.21973 0.88603 1.06066 1.06066 1.21499 0.92284 0.82199 0.74224 1.90655 1.72107 1.32549 1.53102 1.48371 1.07415 1.06566 1.72179 1.20723 0.96457 0.80607 0.99198 1.22683 0.95876 1.00587 1.00071 1.19196 0.95721 0.93962 0.95255 1.20141 1.01661 1.01887 0.92151 1.21012 0.95333 0.95396 0.99049 1.20405 1.04852 1.04041 0.93582 1.20835 0.97301 0.99548 0.98132 1.18139 0.99065 1.05385 0.81060 1.91258 1.88280 1.95250 1.39359 1.18943 0.92438 0.91261 0.90351 1.19223 1.06372 0.97832 1.26807 0.90815 1.26529 0.98737 0.96321 0.95832 1.69775 1.28560 1.14183 1.30692 0.85469 0.78692 0.78996 0.78373 1.17550 1.19691 1.19045 1.20655 1.00094 0.94067 0.97612 1.21637 0.79827 1.01693 0.97425 0.88417 0.88921 0.86337 0.87165 0.87642 0.88299 0.85182 0.85118 0.87020 0.90210 0.93122 0.89143 0.89897 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.75 71.23 0.62 -2.50 16 2 C 0.51 14.38 7.83 87.66 0.69 15.07 16 3 O -0.60 -22.14 16.57 -3.03 -0.05 -22.19 16 4 N -0.61 -16.44 2.96 -823.43 -2.44 -18.88 16 5 C 0.15 3.53 6.49 85.43 0.55 4.08 16 6 C -0.17 -5.72 9.37 24.89 0.23 -5.49 16 7 C -0.04 -1.50 4.44 -18.43 -0.08 -1.59 16 8 C -0.16 -6.86 5.19 -18.49 -0.10 -6.96 16 9 C -0.09 -3.51 9.78 22.49 0.22 -3.29 16 10 C -0.21 -8.32 9.98 22.31 0.22 -8.10 16 11 C -0.14 -6.34 9.94 22.23 0.22 -6.12 16 12 C -0.02 -0.86 6.68 22.84 0.15 -0.70 16 13 F -0.16 -9.12 14.30 44.97 0.64 -8.48 16 14 C 0.07 3.80 5.56 -19.82 -0.11 3.69 16 15 C -0.47 -24.81 8.13 23.32 0.19 -24.62 16 16 H 0.07 3.84 7.68 -2.91 -0.02 3.82 16 17 C 0.04 2.19 4.55 85.31 0.39 2.58 16 18 N -0.81 -42.85 11.10 21.86 0.24 -42.61 16 19 Si 0.96 39.14 29.60 68.60 2.03 41.17 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 C -0.09 -2.77 5.95 29.64 0.18 -2.60 16 24 C 0.12 3.15 6.48 86.24 0.56 3.71 16 25 H 0.10 1.73 7.57 -2.39 -0.02 1.71 16 26 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 27 H 0.12 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.11 2.14 6.24 -2.39 -0.01 2.13 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.10 3.71 7.95 -2.91 -0.02 3.69 16 31 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.13 4.23 8.06 -2.92 -0.02 4.21 16 33 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 34 H 0.29 14.05 8.29 -92.72 -0.77 13.28 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 37 H 0.08 2.38 7.07 -2.39 -0.02 2.37 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -66.94 322.76 5.43 -61.51 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.07 Total: 22.32 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.94 Total: -32.83 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -2.20 Total: -61.49 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.64 Total: -8.48 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -66.94 5.43 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241970498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.266 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds