Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33964 * 1 3 3 C 1.48315 * 120.00427 * 2 1 4 4 C 1.39380 * 120.12172 * 64.99908 * 3 2 1 5 5 C 1.38008 * 119.86853 * 180.02562 * 4 3 2 6 6 C 1.38333 * 120.12882 * 359.97438 * 5 4 3 7 7 C 1.38332 * 120.24838 * 0.26116 * 6 5 4 8 8 C 1.38008 * 120.12552 * 359.48374 * 7 6 5 9 9 C 1.48090 * 119.99975 * 180.02562 * 2 1 3 10 10 C 1.39230 * 120.28667 * 104.72166 * 9 2 1 11 11 C 1.38300 * 120.09491 * 179.73395 * 10 9 2 12 12 C 1.38057 * 120.77939 * 0.56541 * 11 10 9 13 13 C 1.39120 * 120.25278 * 359.71239 * 12 11 10 14 14 N 1.38180 * 132.74075 * 180.02562 * 13 12 11 15 15 H 0.97000 * 124.70216 * 359.95036 * 14 13 12 16 16 C 1.35581 * 110.59553 * 179.97438 * 14 13 12 17 17 C 1.39004 * 109.24268 * 359.97438 * 16 14 13 18 18 C 1.40974 * 126.92596 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99933 * 179.97438 * 18 17 16 20 20 C 1.39678 * 120.00304 * 359.97438 * 18 17 16 21 21 N 1.31082 * 119.99492 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46894 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47143 * 119.99684 * 22 20 18 25 25 H 1.48495 * 109.46964 * 240.00131 * 22 20 18 26 26 C 1.40245 * 120.28582 * 285.00184 * 9 2 1 27 27 H 1.08001 * 120.00143 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00276 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.06506 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.93305 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.87185 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.92889 * 179.72417 * 7 6 5 33 33 H 1.08005 * 120.05950 * 180.23581 * 8 7 6 34 34 H 1.08001 * 119.95457 * 359.97438 * 10 9 2 35 35 H 1.08002 * 119.61020 * 180.25442 * 11 10 9 36 36 H 1.08003 * 119.87347 * 179.72725 * 12 11 10 37 37 H 1.08000 * 125.37954 * 180.02562 * 16 14 13 38 38 H 0.96999 * 119.99820 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3396 0.0000 0.0000 3 6 2.0813 1.2844 0.0000 4 6 1.9898 2.1449 1.0926 5 6 2.6818 3.3390 1.0869 6 6 3.4654 3.6822 -0.0002 7 6 3.5559 2.8342 -1.0894 8 6 2.8726 1.6352 -1.0924 9 6 2.0801 -1.2825 -0.0006 10 6 2.6958 -1.7373 -1.1636 11 6 3.3909 -2.9329 -1.1582 12 6 3.4755 -3.6958 -0.0107 13 6 2.8643 -3.2665 1.1630 14 7 2.7847 -3.8088 2.4315 15 1 3.1869 -4.6501 2.6986 16 6 2.0661 -3.0022 3.2507 17 6 1.6431 -1.8858 2.5387 18 6 0.8729 -0.8111 3.0278 19 1 0.6062 0.0046 2.3721 20 6 0.4545 -0.8013 4.3605 21 7 0.7778 -1.7915 5.1561 22 14 -0.5667 0.6224 5.0083 23 1 -0.7946 1.6045 3.9180 24 1 -1.8730 0.1125 5.4967 25 1 0.1561 1.2821 6.1251 26 6 2.1622 -2.0523 1.1689 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.3787 1.8778 1.9420 30 1 2.6120 4.0064 1.9331 31 1 4.0048 4.6179 -0.0005 32 1 4.1657 3.1094 -1.9373 33 1 2.9471 0.9722 -1.9418 34 1 2.6337 -1.1537 -2.0702 35 1 3.8690 -3.2763 -2.0638 36 1 4.0184 -4.6294 -0.0242 37 1 1.8562 -3.1960 4.2923 38 1 0.4870 -1.7849 6.0815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242893772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = 89.772534 kcal Electronic energy + Delta-G solvation = -21988.719698 eV Core-core repulsion = 18954.076965 eV Total energy + Delta-G solvation = -3034.642733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76353 -38.71086 -36.00126 -34.18087 -33.11990 -30.56164 -30.36104 -28.91272 -28.20747 -27.51479 -24.73089 -22.87447 -22.07185 -21.75959 -20.47939 -19.61641 -18.80840 -17.02023 -16.10141 -15.82451 -15.24179 -14.89875 -14.47471 -14.29950 -14.20776 -13.60843 -13.27552 -13.13868 -12.94778 -12.79910 -12.51089 -12.11496 -11.78882 -11.36562 -11.23120 -11.09994 -11.05014 -10.84693 -10.59881 -10.42406 -10.17354 -9.82596 -9.62651 -9.38787 -8.71945 -8.55935 -8.24297 -7.97650 -7.03905 -6.55163 -6.45679 -3.94527 1.60401 1.79044 2.12465 2.62451 2.85998 3.08272 3.17877 3.21481 4.10044 4.17368 4.22850 4.58170 4.75574 5.23736 5.26322 5.32334 5.48847 5.57115 5.65010 5.72844 5.84101 5.96159 5.99476 6.13259 6.26800 6.38326 6.42125 6.51892 6.66387 6.74216 6.81661 6.85644 6.97596 7.14166 7.18515 7.23488 7.30458 7.39818 7.41670 7.53618 7.69951 7.88796 8.08420 8.35928 8.72217 9.06244 9.18933 9.25233 10.52820 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.008674 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.248309 B = 3227.269491 C = 5252.112049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.036 4.036 3 C -0.028 4.028 4 C -0.099 4.099 5 C -0.124 4.124 6 C -0.130 4.130 7 C -0.127 4.127 8 C -0.109 4.109 9 C 0.009 3.991 10 C -0.176 4.176 11 C -0.116 4.116 12 C -0.153 4.153 13 C 0.084 3.916 14 N -0.592 5.592 15 H 0.393 0.607 16 C -0.094 4.094 17 C 0.018 3.982 18 C -0.409 4.409 19 H 0.081 0.919 20 C 0.053 3.947 21 N -0.836 5.836 22 Si 0.906 3.094 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.279 1.279 26 C -0.110 4.110 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.192 0.808 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 4.309 -7.820 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 C -0.028 4.028 4 C -0.116 4.116 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.145 4.145 8 C -0.127 4.127 9 C 0.008 3.992 10 C -0.196 4.196 11 C -0.135 4.135 12 C -0.175 4.175 13 C -0.027 4.027 14 N -0.193 5.193 15 H 0.226 0.774 16 C -0.219 4.219 17 C 0.013 3.987 18 C -0.441 4.441 19 H 0.099 0.901 20 C -0.156 4.156 21 N -0.467 5.467 22 Si 0.732 3.268 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.117 4.117 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.208 0.792 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.650 4.210 -7.431 8.942 hybrid contribution -0.166 0.111 0.656 0.686 sum 2.485 4.321 -6.774 8.411 Atomic orbital electron populations 1.24273 0.94087 1.01512 0.99514 1.19082 0.93357 0.90347 1.00829 1.18986 0.96584 0.93263 0.93954 1.21491 0.99027 0.93264 0.97859 1.21073 0.97775 0.97034 0.98304 1.21078 0.99838 0.99606 0.94312 1.20975 1.00242 0.94869 0.98452 1.21205 0.96729 0.96504 0.98223 1.18050 0.96854 0.92086 0.92200 1.20524 1.04068 0.98209 0.96802 1.20292 1.01242 0.95527 0.96483 1.19825 1.05269 1.00730 0.91644 1.18181 1.02238 0.95618 0.86695 1.41566 1.48655 1.21176 1.07952 0.77365 1.23419 1.06442 0.94443 0.97550 1.18056 0.98372 0.94843 0.87466 1.18977 1.26363 1.04292 0.94507 0.90086 1.25624 0.96420 0.96698 0.96900 1.69465 1.40759 1.30242 1.06277 0.86263 0.79660 0.81632 0.79234 1.18699 1.20410 1.20441 1.19374 1.02957 0.94675 0.94649 0.87727 0.88605 0.85106 0.86366 0.86749 0.86570 0.86186 0.87746 0.87539 0.88241 0.79206 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 12.61 29.23 0.37 -2.56 16 2 C -0.04 -0.71 3.48 -103.21 -0.36 -1.07 16 3 C -0.03 -0.51 5.33 -104.90 -0.56 -1.07 16 4 C -0.10 -1.79 9.72 -39.24 -0.38 -2.17 16 5 C -0.12 -1.92 10.03 -39.63 -0.40 -2.32 16 6 C -0.13 -1.81 10.04 -39.51 -0.40 -2.21 16 7 C -0.13 -1.79 10.03 -39.63 -0.40 -2.19 16 8 C -0.11 -1.74 9.66 -39.24 -0.38 -2.12 16 9 C 0.01 0.19 5.29 -104.73 -0.55 -0.37 16 10 C -0.18 -3.34 9.56 -39.19 -0.37 -3.71 16 11 C -0.12 -2.10 10.00 -39.62 -0.40 -2.50 16 12 C -0.15 -2.96 10.06 -39.32 -0.40 -3.35 16 13 C 0.08 1.88 7.23 -83.91 -0.61 1.28 16 14 N -0.59 -12.97 5.99 -9.81 -0.06 -13.02 16 15 H 0.39 7.07 8.96 -40.82 -0.37 6.71 16 16 C -0.09 -2.39 10.89 -15.61 -0.17 -2.56 16 17 C 0.02 0.47 6.10 -104.83 -0.64 -0.17 16 18 C -0.41 -10.67 8.96 -38.01 -0.34 -11.01 16 19 H 0.08 2.02 3.97 -52.48 -0.21 1.81 16 20 C 0.05 1.33 5.49 -17.33 -0.10 1.24 16 21 N -0.84 -21.62 10.33 55.54 0.57 -21.04 16 22 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 C -0.11 -2.67 6.19 -104.64 -0.65 -3.31 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.13 2.55 6.82 -52.49 -0.36 2.19 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.76 7.04 -52.48 -0.37 1.39 16 34 H 0.10 1.72 7.16 -52.49 -0.38 1.34 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.19 4.96 5.68 -52.49 -0.30 4.66 16 38 H 0.27 6.49 8.30 -40.82 -0.34 6.16 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -28.48 322.21 -10.45 -38.92 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -4.07 Total: 16.13 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: -6.72 Total: -40.19 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.52 Total: -34.07 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.48 -10.45 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242893772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.695 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds