Wall clock time and date at job start Tue Mar 31 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33964 * 1 3 3 C 1.48315 * 120.00427 * 2 1 4 4 C 1.39380 * 120.12172 * 64.99908 * 3 2 1 5 5 C 1.38008 * 119.86853 * 180.02562 * 4 3 2 6 6 C 1.38333 * 120.12882 * 359.97438 * 5 4 3 7 7 C 1.38332 * 120.24838 * 0.26116 * 6 5 4 8 8 C 1.38008 * 120.12552 * 359.48374 * 7 6 5 9 9 C 1.48090 * 119.99975 * 180.02562 * 2 1 3 10 10 C 1.39230 * 120.28667 * 104.72166 * 9 2 1 11 11 C 1.38300 * 120.09491 * 179.73395 * 10 9 2 12 12 C 1.38057 * 120.77939 * 0.56541 * 11 10 9 13 13 C 1.39120 * 120.25278 * 359.71239 * 12 11 10 14 14 N 1.38180 * 132.74075 * 180.02562 * 13 12 11 15 15 H 0.97000 * 124.70216 * 359.95036 * 14 13 12 16 16 C 1.35581 * 110.59553 * 179.97438 * 14 13 12 17 17 C 1.39004 * 109.24268 * 359.97438 * 16 14 13 18 18 C 1.40974 * 126.92596 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99933 * 179.97438 * 18 17 16 20 20 C 1.39678 * 120.00304 * 359.97438 * 18 17 16 21 21 N 1.31082 * 119.99492 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46894 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47143 * 119.99684 * 22 20 18 25 25 H 1.48495 * 109.46964 * 240.00131 * 22 20 18 26 26 C 1.40245 * 120.28582 * 285.00184 * 9 2 1 27 27 H 1.08001 * 120.00143 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00276 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.06506 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.93305 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.87185 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.92889 * 179.72417 * 7 6 5 33 33 H 1.08005 * 120.05950 * 180.23581 * 8 7 6 34 34 H 1.08001 * 119.95457 * 359.97438 * 10 9 2 35 35 H 1.08002 * 119.61020 * 180.25442 * 11 10 9 36 36 H 1.08003 * 119.87347 * 179.72725 * 12 11 10 37 37 H 1.08000 * 125.37954 * 180.02562 * 16 14 13 38 38 H 0.96999 * 119.99820 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3396 0.0000 0.0000 3 6 2.0813 1.2844 0.0000 4 6 1.9898 2.1449 1.0926 5 6 2.6818 3.3390 1.0869 6 6 3.4654 3.6822 -0.0002 7 6 3.5559 2.8342 -1.0894 8 6 2.8726 1.6352 -1.0924 9 6 2.0801 -1.2825 -0.0006 10 6 2.6958 -1.7373 -1.1636 11 6 3.3909 -2.9329 -1.1582 12 6 3.4755 -3.6958 -0.0107 13 6 2.8643 -3.2665 1.1630 14 7 2.7847 -3.8088 2.4315 15 1 3.1869 -4.6501 2.6986 16 6 2.0661 -3.0022 3.2507 17 6 1.6431 -1.8858 2.5387 18 6 0.8729 -0.8111 3.0278 19 1 0.6062 0.0046 2.3721 20 6 0.4545 -0.8013 4.3605 21 7 0.7778 -1.7915 5.1561 22 14 -0.5667 0.6224 5.0083 23 1 -0.7946 1.6045 3.9180 24 1 -1.8730 0.1125 5.4967 25 1 0.1561 1.2821 6.1251 26 6 2.1622 -2.0523 1.1689 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.3787 1.8778 1.9420 30 1 2.6120 4.0064 1.9331 31 1 4.0048 4.6179 -0.0005 32 1 4.1657 3.1094 -1.9373 33 1 2.9471 0.9722 -1.9418 34 1 2.6337 -1.1537 -2.0702 35 1 3.8690 -3.2763 -2.0638 36 1 4.0184 -4.6294 -0.0242 37 1 1.8562 -3.1960 4.2923 38 1 0.4870 -1.7849 6.0815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242893772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:02 Heat of formation + Delta-G solvation = 77.258266 kcal Electronic energy + Delta-G solvation = -21989.262357 eV Core-core repulsion = 18954.076965 eV Total energy + Delta-G solvation = -3035.185393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42139 -39.97086 -37.57016 -35.79802 -34.81241 -31.96420 -31.75844 -30.38914 -29.76669 -29.20673 -26.58491 -24.26609 -23.28193 -23.23336 -22.10691 -21.39533 -20.33180 -18.52681 -17.67384 -17.50856 -16.79988 -16.33840 -15.96342 -15.72814 -15.64810 -15.01019 -14.86521 -14.65179 -14.35192 -14.30066 -14.19216 -13.43133 -13.21310 -12.97433 -12.96456 -12.82992 -12.50458 -12.31320 -12.06548 -11.83782 -11.73457 -11.62844 -11.24509 -11.23841 -10.18091 -9.89567 -9.76337 -9.32839 -8.70554 -8.34757 -8.34233 -5.88788 0.31127 0.57377 0.59299 1.03665 1.33772 1.39187 1.41786 1.51781 2.30342 2.34111 2.92144 2.96688 3.12698 3.69558 3.95684 4.05013 4.16292 4.21636 4.30869 4.36194 4.49219 4.65122 4.70142 4.77826 4.83151 4.89810 5.06264 5.07750 5.22503 5.28334 5.40364 5.47492 5.54973 5.63104 5.67175 5.71973 5.79723 5.86838 5.95140 6.02794 6.09849 6.19986 6.31853 6.60640 6.86851 7.20599 7.29881 7.45488 8.64710 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.008674 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.248309 B = 3227.269491 C = 5252.112049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.052 4.052 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.103 4.103 12 C -0.157 4.157 13 C 0.071 3.929 14 N -0.589 5.589 15 H 0.409 0.591 16 C -0.114 4.114 17 C -0.018 4.018 18 C -0.431 4.431 19 H 0.082 0.918 20 C 0.008 3.992 21 N -0.863 5.863 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.149 4.149 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.177 0.823 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 5.649 -10.506 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.141 4.141 7 C -0.138 4.138 8 C -0.134 4.134 9 C -0.010 4.010 10 C -0.191 4.191 11 C -0.122 4.122 12 C -0.178 4.178 13 C -0.040 4.040 14 N -0.193 5.193 15 H 0.245 0.755 16 C -0.239 4.239 17 C -0.024 4.024 18 C -0.464 4.464 19 H 0.100 0.900 20 C -0.198 4.198 21 N -0.495 5.495 22 Si 0.790 3.210 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.156 4.156 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.193 0.807 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.273 5.526 -10.133 12.307 hybrid contribution -0.557 -0.321 1.322 1.470 sum 3.716 5.205 -8.811 10.887 Atomic orbital electron populations 1.24304 0.94183 1.01569 0.99919 1.19217 0.93631 0.90715 1.00572 1.19032 0.98074 0.92875 0.95233 1.21424 1.00507 0.95054 0.97493 1.21329 0.97476 0.96202 0.99746 1.21511 0.98670 1.00744 0.93209 1.21418 0.99309 0.93653 0.99461 1.21418 0.96446 0.97743 0.97756 1.18406 0.97550 0.92740 0.92331 1.20963 1.02600 0.98708 0.96792 1.20860 0.99503 0.94340 0.97537 1.20257 1.04773 1.02151 0.90632 1.18638 1.02393 0.95360 0.87589 1.41372 1.48664 1.21568 1.07659 0.75544 1.23196 1.07836 0.95385 0.97476 1.18486 0.99193 0.95406 0.89303 1.19232 1.27203 1.04727 0.95251 0.89965 1.26408 0.97411 0.99037 0.96944 1.69571 1.41759 1.31640 1.06566 0.85333 0.78160 0.78833 0.78642 1.18105 1.19914 1.19937 1.19665 1.04601 0.96501 0.94837 0.89007 0.87125 0.87886 0.84671 0.83132 0.82914 0.84873 0.84809 0.83000 0.85003 0.80654 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.32 12.61 66.85 0.84 -5.47 16 2 C -0.04 -1.66 3.48 -18.95 -0.07 -1.73 16 3 C -0.05 -1.91 5.33 -20.05 -0.11 -2.02 16 4 C -0.13 -4.69 9.72 22.49 0.22 -4.48 16 5 C -0.13 -3.84 10.03 22.24 0.22 -3.62 16 6 C -0.12 -3.01 10.04 22.31 0.22 -2.79 16 7 C -0.12 -2.94 10.03 22.24 0.22 -2.72 16 8 C -0.12 -3.45 9.66 22.49 0.22 -3.24 16 9 C -0.01 -0.42 5.29 -19.94 -0.11 -0.53 16 10 C -0.17 -6.06 9.56 22.52 0.22 -5.84 16 11 C -0.10 -3.34 10.00 22.24 0.22 -3.12 16 12 C -0.16 -5.66 10.06 22.44 0.23 -5.44 16 13 C 0.07 3.19 7.23 38.85 0.28 3.47 16 14 N -0.59 -26.54 5.99 -184.95 -1.11 -27.64 16 15 H 0.41 15.00 8.96 -92.71 -0.83 14.17 16 16 C -0.11 -6.11 10.89 84.30 0.92 -5.19 16 17 C -0.02 -1.03 6.10 -20.00 -0.12 -1.15 16 18 C -0.43 -23.84 8.96 23.29 0.21 -23.63 16 19 H 0.08 4.37 3.97 -2.91 -0.01 4.36 16 20 C 0.01 0.42 5.49 85.15 0.47 0.89 16 21 N -0.86 -46.95 10.33 21.79 0.23 -46.73 16 22 Si 0.97 41.30 29.56 68.60 2.03 43.33 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C -0.15 -7.47 6.19 -19.87 -0.12 -7.59 16 27 H 0.09 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.10 4.28 6.82 -2.91 -0.02 4.26 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.13 3.50 7.04 -2.91 -0.02 3.48 16 34 H 0.13 3.91 7.16 -2.91 -0.02 3.88 16 35 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.18 9.80 5.68 -2.91 -0.02 9.79 16 38 H 0.27 13.76 8.30 -92.71 -0.77 12.99 16 Total: -1.00 -65.57 322.21 5.38 -60.20 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: 0.27 Total: 45.05 kcal Atomic # 6 Polarization: -78.16 SS G_CDS: 3.96 Total: -74.20 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -0.88 Total: -74.37 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -65.57 5.38 -60.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242893772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.455 kcal (2) G-P(sol) polarization free energy of solvation -65.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds