Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47524 * 2 1 4 4 C 1.53004 * 109.47479 * 240.00138 * 2 1 3 5 5 N 1.46502 * 109.47111 * 120.00070 * 2 1 3 6 6 C 1.34861 * 125.89745 * 75.29812 * 5 2 1 7 7 C 1.36431 * 107.60601 * 180.19844 * 6 5 2 8 8 C 1.48482 * 126.21763 * 179.83576 * 7 6 5 9 9 C 1.38939 * 120.41120 * 129.73482 * 8 7 6 10 10 C 1.40971 * 118.13328 * 179.97438 * 9 8 7 11 11 C 1.41366 * 120.57491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00086 * 155.76696 * 11 10 9 13 13 C 1.39895 * 119.99862 * 335.75830 * 11 10 9 14 14 N 1.30865 * 119.99927 * 343.47414 * 13 11 10 15 15 Si 1.86798 * 120.00071 * 163.47233 * 13 11 10 16 16 H 1.48497 * 109.47092 * 59.99783 * 15 13 11 17 17 H 1.48501 * 109.47388 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47022 * 300.00196 * 15 13 11 19 19 C 1.40803 * 118.84828 * 0.02562 * 10 9 8 20 20 N 1.31505 * 120.68741 * 359.97438 * 19 10 9 21 21 C 1.32161 * 122.06659 * 0.02562 * 20 19 10 22 22 F 1.35102 * 119.45281 * 179.97438 * 21 20 19 23 23 C 1.40840 * 107.55987 * 359.57075 * 7 6 5 24 24 N 1.30685 * 108.10360 * 0.26313 * 23 7 6 25 25 H 1.08991 * 109.46957 * 300.00292 * 1 2 3 26 26 H 1.09004 * 109.46596 * 59.99735 * 1 2 3 27 27 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47533 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47164 * 300.00357 * 3 2 1 30 30 H 1.09000 * 109.46679 * 59.99897 * 3 2 1 31 31 H 1.09004 * 109.46837 * 299.99932 * 4 2 1 32 32 H 1.08996 * 109.46743 * 59.99928 * 4 2 1 33 33 H 1.08994 * 109.47398 * 180.02562 * 4 2 1 34 34 H 1.08001 * 126.19416 * 0.05110 * 6 5 2 35 35 H 1.07997 * 120.93505 * 359.97438 * 9 8 7 36 36 H 0.97002 * 119.99682 * 179.97438 * 14 13 11 37 37 H 1.08005 * 119.65069 * 180.26108 * 19 10 9 38 38 H 1.07996 * 125.95192 * 180.26903 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0205 -2.0247 1.3935 7 6 2.5506 -2.2583 2.6287 8 6 2.7427 -3.5865 3.2641 9 6 3.9713 -3.9326 3.8128 10 6 4.1002 -5.2056 4.4045 11 6 5.3271 -5.6112 4.9778 12 1 5.3394 -6.3703 5.7460 13 6 6.5252 -5.0295 4.5500 14 7 6.5642 -4.3647 3.4235 15 14 8.0695 -5.2017 5.5868 16 1 8.4042 -6.6402 5.7413 17 1 9.1950 -4.5000 4.9188 18 1 7.8368 -4.6011 6.9249 19 6 2.9860 -6.0665 4.4135 20 7 1.8439 -5.6916 3.8804 21 6 1.6879 -4.5060 3.3177 22 9 0.4909 -4.1756 2.7853 23 6 2.8882 -1.0111 3.1890 24 7 2.5683 -0.0799 2.3297 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.6646 -2.7725 0.7003 35 1 4.8042 -3.2456 3.7869 36 1 7.3949 -3.9611 3.1270 37 1 3.0691 -7.0431 4.8672 38 1 3.3339 -0.8518 4.1597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243563926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = 47.389579 kcal Electronic energy + Delta-G solvation = -22573.314621 eV Core-core repulsion = 19138.357552 eV Total energy + Delta-G solvation = -3434.957070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.47125 -40.86012 -38.16207 -36.65750 -34.11916 -31.91077 -30.35119 -30.19398 -28.08668 -27.55216 -27.15355 -25.45150 -22.61562 -22.28931 -21.35400 -19.75219 -18.93660 -17.43838 -16.64010 -16.41914 -15.80238 -15.11712 -14.97468 -14.55202 -14.40072 -14.17124 -13.71984 -13.45175 -13.18372 -12.62950 -12.41677 -12.37072 -12.31419 -12.17919 -12.07299 -11.88917 -11.77482 -11.67918 -11.36529 -11.24938 -11.17625 -11.14633 -10.67916 -10.36364 -10.06210 -9.43672 -8.97135 -8.78161 -8.34084 -7.84956 -7.23674 -6.94751 -4.56972 2.13770 2.46553 2.72642 2.73994 2.98290 2.99890 3.08038 3.46282 3.78586 4.39652 4.45275 4.66411 4.76034 5.14193 5.19679 5.27263 5.32650 5.43267 5.44104 5.52750 5.59275 5.63860 5.66329 5.85354 5.94031 6.03916 6.07289 6.16774 6.29257 6.42259 6.60730 6.88857 6.96133 7.02750 7.16039 7.41853 7.59031 7.73258 7.84424 8.14948 8.29627 8.54915 8.56160 9.30337 9.95945 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.004763 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.660979 B = 5877.221552 C = 6907.165294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 C -0.141 4.141 4 C -0.161 4.161 5 N -0.368 5.368 6 C 0.067 3.933 7 C -0.168 4.168 8 C -0.056 4.056 9 C -0.101 4.101 10 C 0.057 3.943 11 C -0.443 4.443 12 H 0.086 0.914 13 C 0.074 3.926 14 N -0.785 5.785 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.261 1.261 19 C 0.004 3.996 20 N -0.491 5.491 21 C 0.157 3.843 22 F -0.149 7.149 23 C 0.062 3.938 24 N -0.304 5.304 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.286 0.714 37 H 0.136 0.864 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 8.550 -6.727 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.219 4.219 5 N -0.151 5.151 6 C -0.079 4.079 7 C -0.179 4.179 8 C -0.060 4.060 9 C -0.127 4.127 10 C 0.053 3.947 11 C -0.472 4.472 12 H 0.104 0.896 13 C -0.146 4.146 14 N -0.409 5.409 15 Si 0.738 3.262 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.157 4.157 20 N -0.203 5.203 21 C 0.003 3.997 22 F -0.129 7.129 23 C -0.124 4.124 24 N -0.124 5.124 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.184 0.816 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.341 9.484 -7.286 12.723 hybrid contribution 1.262 -0.499 0.401 1.415 sum -3.079 8.985 -6.885 11.731 Atomic orbital electron populations 1.22261 0.93328 1.03221 1.02939 1.20603 0.94137 0.93522 0.81745 1.21882 1.02178 0.93145 1.02667 1.22250 1.02483 1.01180 0.95974 1.48581 1.48597 1.04044 1.13884 1.22314 1.01474 0.85935 0.98127 1.18782 1.10494 0.93425 0.95237 1.18454 0.93965 0.91409 1.02219 1.21687 0.94435 0.96572 0.99998 1.18485 0.93878 0.91145 0.91232 1.19515 0.89952 1.19265 1.18502 0.89563 1.25989 1.01341 0.93021 0.94218 1.69784 1.29476 1.24847 1.16796 0.86250 0.79441 0.79763 0.80732 1.18742 1.20194 1.18557 1.22250 0.88345 0.99326 1.05766 1.66246 1.28034 1.16218 1.09766 1.17579 0.81429 0.92928 1.07761 1.91374 1.44602 1.92040 1.84841 1.23908 0.99351 0.89978 0.99159 1.77072 1.18705 1.22127 0.94512 0.91672 0.90766 0.91670 0.91681 0.91346 0.91093 0.91499 0.90412 0.91441 0.81629 0.84440 0.90288 0.84640 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.73 37.16 0.32 -1.34 16 2 C 0.18 2.20 1.24 -131.81 -0.16 2.04 16 3 C -0.14 -1.52 8.08 37.16 0.30 -1.22 16 4 C -0.16 -1.65 8.28 37.16 0.31 -1.34 16 5 N -0.37 -5.98 3.43 -48.38 -0.17 -6.15 16 6 C 0.07 1.21 9.95 -16.87 -0.17 1.05 16 7 C -0.17 -3.46 5.38 -105.34 -0.57 -4.03 16 8 C -0.06 -1.31 5.76 -104.74 -0.60 -1.91 16 9 C -0.10 -2.49 8.49 -38.29 -0.32 -2.82 16 10 C 0.06 1.44 5.59 -106.70 -0.60 0.84 16 11 C -0.44 -10.76 9.08 -37.77 -0.34 -11.10 16 12 H 0.09 1.97 7.90 -52.49 -0.41 1.55 16 13 C 0.07 1.71 5.19 -17.34 -0.09 1.62 16 14 N -0.78 -18.87 10.90 55.54 0.61 -18.27 16 15 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 C 0.00 0.11 10.96 -16.72 -0.18 -0.08 16 20 N -0.49 -12.38 10.34 -12.59 -0.13 -12.51 16 21 C 0.16 3.86 8.38 -16.74 -0.14 3.72 16 22 F -0.15 -3.47 16.38 2.25 0.04 -3.43 16 23 C 0.06 1.18 11.94 -17.06 -0.20 0.98 16 24 N -0.30 -5.47 11.61 30.80 0.36 -5.12 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 31 H 0.07 0.69 7.35 -51.93 -0.38 0.31 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.17 2.76 7.53 -52.49 -0.40 2.37 16 35 H 0.14 3.44 6.20 -52.49 -0.33 3.12 16 36 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 37 H 0.14 2.99 8.06 -52.48 -0.42 2.56 16 38 H 0.18 3.06 8.06 -52.49 -0.42 2.64 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -28.29 329.03 -6.69 -34.98 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.87 Total: 6.89 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.45 Total: -13.60 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.67 Total: -42.03 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.29 -6.69 -34.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243563926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.368 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds