Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47524 * 2 1 4 4 C 1.53004 * 109.47479 * 240.00138 * 2 1 3 5 5 N 1.46502 * 109.47111 * 120.00070 * 2 1 3 6 6 C 1.34861 * 125.89745 * 75.29812 * 5 2 1 7 7 C 1.36431 * 107.60601 * 180.19844 * 6 5 2 8 8 C 1.48482 * 126.21763 * 179.83576 * 7 6 5 9 9 C 1.38939 * 120.41120 * 129.73482 * 8 7 6 10 10 C 1.40971 * 118.13328 * 179.97438 * 9 8 7 11 11 C 1.41366 * 120.57491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00086 * 155.76696 * 11 10 9 13 13 C 1.39895 * 119.99862 * 335.75830 * 11 10 9 14 14 N 1.30865 * 119.99927 * 343.47414 * 13 11 10 15 15 Si 1.86798 * 120.00071 * 163.47233 * 13 11 10 16 16 H 1.48497 * 109.47092 * 59.99783 * 15 13 11 17 17 H 1.48501 * 109.47388 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47022 * 300.00196 * 15 13 11 19 19 C 1.40803 * 118.84828 * 0.02562 * 10 9 8 20 20 N 1.31505 * 120.68741 * 359.97438 * 19 10 9 21 21 C 1.32161 * 122.06659 * 0.02562 * 20 19 10 22 22 F 1.35102 * 119.45281 * 179.97438 * 21 20 19 23 23 C 1.40840 * 107.55987 * 359.57075 * 7 6 5 24 24 N 1.30685 * 108.10360 * 0.26313 * 23 7 6 25 25 H 1.08991 * 109.46957 * 300.00292 * 1 2 3 26 26 H 1.09004 * 109.46596 * 59.99735 * 1 2 3 27 27 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47533 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47164 * 300.00357 * 3 2 1 30 30 H 1.09000 * 109.46679 * 59.99897 * 3 2 1 31 31 H 1.09004 * 109.46837 * 299.99932 * 4 2 1 32 32 H 1.08996 * 109.46743 * 59.99928 * 4 2 1 33 33 H 1.08994 * 109.47398 * 180.02562 * 4 2 1 34 34 H 1.08001 * 126.19416 * 0.05110 * 6 5 2 35 35 H 1.07997 * 120.93505 * 359.97438 * 9 8 7 36 36 H 0.97002 * 119.99682 * 179.97438 * 14 13 11 37 37 H 1.08005 * 119.65069 * 180.26108 * 19 10 9 38 38 H 1.07996 * 125.95192 * 180.26903 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0205 -2.0247 1.3935 7 6 2.5506 -2.2583 2.6287 8 6 2.7427 -3.5865 3.2641 9 6 3.9713 -3.9326 3.8128 10 6 4.1002 -5.2056 4.4045 11 6 5.3271 -5.6112 4.9778 12 1 5.3394 -6.3703 5.7460 13 6 6.5252 -5.0295 4.5500 14 7 6.5642 -4.3647 3.4235 15 14 8.0695 -5.2017 5.5868 16 1 8.4042 -6.6402 5.7413 17 1 9.1950 -4.5000 4.9188 18 1 7.8368 -4.6011 6.9249 19 6 2.9860 -6.0665 4.4135 20 7 1.8439 -5.6916 3.8804 21 6 1.6879 -4.5060 3.3177 22 9 0.4909 -4.1756 2.7853 23 6 2.8882 -1.0111 3.1890 24 7 2.5683 -0.0799 2.3297 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.6646 -2.7725 0.7003 35 1 4.8042 -3.2456 3.7869 36 1 7.3949 -3.9611 3.1270 37 1 3.0691 -7.0431 4.8672 38 1 3.3339 -0.8518 4.1597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243563926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = 32.736229 kcal Electronic energy + Delta-G solvation = -22573.950038 eV Core-core repulsion = 19138.357552 eV Total energy + Delta-G solvation = -3435.592487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.33584 -42.24747 -39.99592 -37.72092 -35.95010 -33.61358 -32.11764 -31.62332 -29.51035 -28.37485 -28.18435 -27.31481 -24.21238 -23.93621 -22.99224 -21.30627 -20.19530 -19.16531 -18.43246 -17.79031 -17.60712 -16.75022 -16.44112 -16.16875 -15.60229 -15.55012 -15.03327 -14.78110 -14.58958 -14.18188 -14.03580 -13.88233 -13.60596 -13.54053 -13.20784 -13.19473 -13.09082 -13.01933 -12.78929 -12.75936 -12.31838 -12.22504 -12.19283 -11.84954 -11.63808 -11.18434 -10.52861 -10.31947 -10.23394 -9.67185 -8.91622 -8.72396 -6.45597 0.42104 0.83692 1.00043 1.43598 1.51778 1.52735 1.56475 1.88033 2.19620 2.63937 3.34029 3.39492 3.55664 3.76545 3.86988 3.90695 3.94546 4.24926 4.36620 4.51701 4.58181 4.68636 4.69810 4.72587 4.76086 4.80199 4.82824 4.85564 5.05241 5.12054 5.15124 5.21878 5.24325 5.29342 5.61350 5.72177 5.83392 5.98506 6.13893 6.43308 6.68291 6.70391 6.71530 7.39586 8.20452 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.004763 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.660979 B = 5877.221552 C = 6907.165294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 C -0.137 4.137 4 C -0.158 4.158 5 N -0.356 5.356 6 C 0.076 3.924 7 C -0.206 4.206 8 C -0.043 4.043 9 C -0.120 4.120 10 C 0.039 3.961 11 C -0.463 4.463 12 H 0.096 0.904 13 C 0.038 3.962 14 N -0.810 5.810 15 Si 0.988 3.012 16 H -0.255 1.255 17 H -0.270 1.270 18 H -0.258 1.258 19 C -0.009 4.009 20 N -0.503 5.503 21 C 0.133 3.867 22 F -0.145 7.145 23 C 0.053 3.947 24 N -0.308 5.308 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.179 0.821 35 H 0.129 0.871 36 H 0.294 0.706 37 H 0.154 0.846 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 9.463 -7.748 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.086 3.914 3 C -0.194 4.194 4 C -0.216 4.216 5 N -0.138 5.138 6 C -0.072 4.072 7 C -0.218 4.218 8 C -0.048 4.048 9 C -0.146 4.146 10 C 0.034 3.966 11 C -0.492 4.492 12 H 0.114 0.886 13 C -0.180 4.180 14 N -0.435 5.435 15 Si 0.808 3.192 16 H -0.179 1.179 17 H -0.195 1.195 18 H -0.182 1.182 19 C -0.170 4.170 20 N -0.215 5.215 21 C -0.020 4.020 22 F -0.125 7.125 23 C -0.133 4.133 24 N -0.129 5.129 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.196 0.804 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.171 0.829 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.894 10.424 -8.329 13.899 hybrid contribution 1.091 -0.722 0.606 1.442 sum -2.803 9.702 -7.723 12.713 Atomic orbital electron populations 1.22257 0.91721 1.03172 1.04110 1.21202 0.95401 0.94160 0.80676 1.21889 1.01285 0.92372 1.03868 1.22276 1.01668 1.01333 0.96279 1.49079 1.46864 1.03580 1.14325 1.22449 1.00151 0.87096 0.97454 1.18817 1.13375 0.92781 0.96808 1.18574 0.93044 0.92322 1.00869 1.21643 0.94729 0.96588 1.01590 1.18806 0.94670 0.91571 0.91568 1.19874 0.90407 1.20040 1.18848 0.88553 1.26860 1.04168 0.92019 0.94933 1.69838 1.30793 1.24818 1.18010 0.85139 0.75234 0.80036 0.78794 1.17934 1.19487 1.18179 1.22524 0.88130 1.00103 1.06277 1.66229 1.28458 1.16761 1.10080 1.17767 0.81982 0.93362 1.08927 1.91360 1.44303 1.92025 1.84846 1.24046 0.99757 0.89547 0.99911 1.77032 1.18792 1.22060 0.94990 0.92973 0.87125 0.92334 0.93041 0.87655 0.92383 0.91779 0.86826 0.92733 0.80363 0.85322 0.89495 0.82893 0.79419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.73 71.98 0.63 -2.21 16 2 C 0.17 3.66 1.24 3.61 0.00 3.66 16 3 C -0.14 -2.63 8.08 71.98 0.58 -2.05 16 4 C -0.16 -2.82 8.28 71.98 0.60 -2.22 16 5 N -0.36 -11.30 3.43 -306.98 -1.05 -12.35 16 6 C 0.08 2.75 9.95 83.81 0.83 3.59 16 7 C -0.21 -8.66 5.38 -20.33 -0.11 -8.77 16 8 C -0.04 -2.09 5.76 -19.94 -0.11 -2.20 16 9 C -0.12 -6.08 8.49 23.11 0.20 -5.89 16 10 C 0.04 1.98 5.59 -21.21 -0.12 1.86 16 11 C -0.46 -22.60 9.08 23.44 0.21 -22.38 16 12 H 0.10 4.36 7.90 -2.91 -0.02 4.34 16 13 C 0.04 1.73 5.19 85.24 0.44 2.17 16 14 N -0.81 -39.09 10.90 21.82 0.24 -38.85 16 15 Si 0.99 34.49 29.59 68.60 2.03 36.52 16 16 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 17 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 19 C -0.01 -0.44 10.96 85.37 0.94 0.50 16 20 N -0.50 -25.88 10.34 -193.75 -2.00 -27.89 16 21 C 0.13 6.68 8.38 85.08 0.71 7.39 16 22 F -0.15 -6.88 16.38 44.97 0.74 -6.15 16 23 C 0.05 2.04 11.94 85.50 1.02 3.06 16 24 N -0.31 -11.05 11.61 -56.46 -0.66 -11.71 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 31 H 0.06 1.19 7.35 -2.38 -0.02 1.17 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.18 5.87 7.53 -2.91 -0.02 5.85 16 35 H 0.13 6.68 6.20 -2.91 -0.02 6.66 16 36 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 37 H 0.15 6.82 8.06 -2.91 -0.02 6.79 16 38 H 0.19 6.62 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -61.60 329.03 6.19 -55.42 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 1.07 Total: 28.50 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 5.82 Total: -23.50 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.47 Total: -90.80 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.74 Total: -6.15 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -61.60 6.19 -55.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243563926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.154 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds