Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81397 * 102.99854 * 2 1 4 4 H 1.09000 * 110.82022 * 51.66494 * 3 2 1 5 5 C 1.54893 * 110.75475 * 288.32807 * 3 2 1 6 6 C 1.54266 * 104.19500 * 203.74488 * 5 3 2 7 7 C 1.53872 * 106.60044 * 23.61099 * 6 5 3 8 8 H 1.09003 * 110.03622 * 240.71485 * 7 6 5 9 9 N 1.46897 * 110.07668 * 119.30490 * 7 6 5 10 10 C 1.46894 * 111.00537 * 186.76402 * 9 7 6 11 11 C 1.46908 * 110.99781 * 62.80814 * 9 7 6 12 12 C 1.52998 * 109.47045 * 190.00013 * 11 9 7 13 13 C 1.52998 * 109.46911 * 180.02562 * 12 11 9 14 14 S 1.80998 * 109.47139 * 180.02562 * 13 12 11 15 15 C 1.76205 * 100.00121 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00010 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99937 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00357 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99772 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47020 * 60.00273 * 19 17 15 21 21 H 1.48504 * 109.47044 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47441 * 300.00184 * 19 17 15 23 23 C 1.54266 * 106.59640 * 359.97438 * 7 6 5 24 24 H 1.08998 * 109.46916 * 299.99964 * 1 2 3 25 25 H 1.08996 * 109.47362 * 59.99819 * 1 2 3 26 26 H 1.09001 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.09002 * 110.48578 * 85.06966 * 5 3 2 28 28 H 1.08998 * 110.60430 * 322.47853 * 5 3 2 29 29 H 1.09002 * 110.02957 * 264.32709 * 6 5 3 30 30 H 1.09000 * 110.07144 * 142.92082 * 6 5 3 31 31 H 1.09002 * 109.46918 * 60.00104 * 10 9 7 32 32 H 1.09003 * 109.47645 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47508 * 300.00344 * 10 9 7 34 34 H 1.08998 * 109.46866 * 310.00579 * 11 9 7 35 35 H 1.09005 * 109.46746 * 70.00418 * 11 9 7 36 36 H 1.08989 * 109.47559 * 300.00116 * 12 11 9 37 37 H 1.09005 * 109.47018 * 60.00571 * 12 11 9 38 38 H 1.09002 * 109.47319 * 300.00466 * 13 12 11 39 39 H 1.08996 * 109.47099 * 60.00537 * 13 12 11 40 40 H 0.97000 * 120.00157 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.48620 * 95.07012 * 23 7 6 42 42 H 1.09004 * 110.48798 * 217.70845 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6935 2.2871 0.7992 5 6 1.9018 2.4048 -1.3749 6 6 2.8171 3.6448 -1.4396 7 6 3.9932 3.3734 -0.4852 8 1 4.0168 4.1269 0.3021 9 7 5.2595 3.3841 -1.2296 10 6 6.3779 2.9700 -0.3721 11 6 5.5110 4.7049 -1.8216 12 6 6.6952 4.6144 -2.7861 13 6 6.9575 5.9902 -3.4020 14 16 8.3580 5.8830 -4.5436 15 6 8.4361 7.5563 -5.0901 16 1 7.7322 8.2819 -4.7101 17 6 9.4022 7.9419 -6.0090 18 7 10.2598 7.0575 -6.4727 19 14 9.4845 9.7157 -6.5889 20 1 9.7209 10.6067 -5.4246 21 1 10.5956 9.8672 -7.5624 22 1 8.2020 10.0834 -7.2411 23 6 3.7511 1.9781 0.1266 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.8539 2.7012 -1.4232 28 1 2.1391 1.7129 -2.1830 29 1 2.2699 4.5301 -1.1155 30 1 3.1856 3.7852 -2.4558 31 1 6.1981 1.9603 -0.0029 32 1 7.3032 2.9873 -0.9480 33 1 6.4624 3.6554 0.4712 34 1 4.6249 5.0346 -2.3640 35 1 5.7400 5.4197 -1.0311 36 1 7.5812 4.2847 -2.2437 37 1 6.4662 3.8997 -3.5766 38 1 6.0715 6.3203 -3.9444 39 1 7.1867 6.7045 -2.6114 40 1 10.9352 7.3271 -7.1146 41 1 4.2886 1.2157 -0.4374 42 1 4.0533 1.9630 1.1738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252368565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -19.424314 kcal Electronic energy + Delta-G solvation = -18407.467770 eV Core-core repulsion = 15638.977808 eV Total energy + Delta-G solvation = -2768.489961 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.33665 -36.05637 -32.57643 -32.36752 -29.43578 -29.41078 -27.89979 -26.57984 -25.52371 -23.61067 -21.24492 -20.66382 -19.67141 -17.47828 -17.07936 -16.29038 -15.66960 -15.17110 -14.92168 -14.78416 -14.28402 -13.97269 -13.93978 -13.79364 -13.53950 -13.29637 -12.84031 -12.28751 -12.21739 -12.02555 -11.90695 -11.54371 -11.35201 -11.29316 -11.07648 -11.06545 -11.00804 -10.87297 -10.72404 -10.59459 -10.22283 -10.12214 -9.50546 -9.03264 -8.32279 -8.27137 -7.97019 -6.50100 -6.20527 -3.90601 1.37953 2.26637 3.22649 3.24248 3.28868 3.54865 3.90186 4.12751 4.24804 4.41504 4.62333 4.77379 4.80324 5.00135 5.05906 5.14739 5.16143 5.18608 5.23385 5.32654 5.35406 5.37354 5.43622 5.50830 5.59700 5.66084 5.76213 5.78187 5.83392 5.93753 5.96374 5.99463 6.02777 6.14614 6.39122 6.62665 6.78933 7.08264 7.14049 7.62091 8.38402 9.25437 10.87569 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.041688 B = 0.002402 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.502708 B =11654.057324 C =11869.226883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.256 6.256 3 C -0.059 4.059 4 H 0.089 0.911 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.085 3.915 8 H 0.043 0.957 9 N -0.533 5.533 10 C 0.018 3.982 11 C 0.057 3.943 12 C -0.093 4.093 13 C -0.112 4.112 14 S -0.132 6.132 15 C -0.516 4.516 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.093 4.093 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.304 -10.975 14.844 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.028 6.028 3 C -0.188 4.188 4 H 0.108 0.892 5 C -0.151 4.151 6 C -0.158 4.158 7 C -0.025 4.025 8 H 0.061 0.939 9 N -0.257 5.257 10 C -0.130 4.130 11 C -0.072 4.072 12 C -0.132 4.132 13 C -0.261 4.261 14 S 0.096 5.904 15 C -0.665 4.665 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.505 5.505 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.132 4.132 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.876 -13.146 14.070 25.605 hybrid contribution -1.481 3.852 0.684 4.183 sum -18.357 -9.294 14.755 25.320 Atomic orbital electron populations 1.23363 0.94609 1.06318 1.04833 1.86917 1.06964 1.11053 1.97854 1.24154 1.00483 0.93145 1.01015 0.89238 1.22669 0.99234 0.97521 0.95686 1.22265 0.95058 0.97233 1.01276 1.22231 0.90244 0.95789 0.94280 0.93881 1.62160 1.01678 1.28342 1.33561 1.22473 0.94811 1.00092 0.95623 1.22240 0.99517 0.88303 0.97148 1.21280 0.96836 0.96811 0.98291 1.23229 1.02789 0.98450 1.01671 1.84637 1.37097 1.16794 1.51859 1.22649 1.19986 0.93817 1.30015 0.91073 1.25014 0.94770 0.98573 0.95467 1.70012 1.17092 1.33913 1.29508 0.86231 0.77877 0.82937 0.78518 1.19980 1.20822 1.19952 1.22269 0.92228 0.97553 1.01120 0.90726 0.90442 0.88262 0.91778 0.89846 0.91799 0.89653 0.91468 0.90459 0.95889 0.90638 0.95083 0.91638 0.90765 0.92209 0.92446 0.92271 0.89152 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.75 101.05 1.09 0.33 16 2 S -0.26 -2.32 21.80 -107.50 -2.34 -4.67 16 3 C -0.06 -0.49 3.40 -24.75 -0.08 -0.57 16 4 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.11 -0.93 6.27 -25.07 -0.16 -1.09 16 6 C -0.12 -1.11 5.82 -25.61 -0.15 -1.26 16 7 C 0.08 0.85 2.67 -66.60 -0.18 0.67 16 8 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 9 N -0.53 -6.43 4.53 -233.54 -1.06 -7.49 16 10 C 0.02 0.20 9.05 60.06 0.54 0.75 16 11 C 0.06 0.77 4.73 -3.82 -0.02 0.75 16 12 C -0.09 -1.55 5.15 -26.73 -0.14 -1.69 16 13 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 14 S -0.13 -3.50 21.44 -107.50 -2.30 -5.80 16 15 C -0.52 -14.94 9.50 30.94 0.29 -14.65 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 19 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.09 -0.85 4.63 -25.09 -0.12 -0.97 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.92 6.66 -51.93 -0.35 0.57 16 31 H 0.07 0.67 6.67 -51.93 -0.35 0.32 16 32 H 0.08 0.94 6.30 -51.93 -0.33 0.61 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.98 6.29 -51.93 -0.33 0.66 16 35 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.07 1.10 6.47 -51.94 -0.34 0.76 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 39 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 0.96 7.37 -51.93 -0.38 0.58 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -30.82 354.74 -10.97 -41.79 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.52 Total: -2.49 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 1.20 Total: -17.86 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.32 Total: -32.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -4.65 Total: -10.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.82 -10.97 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252368565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.364 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds