Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99919 * 2 1 4 4 H 1.09000 * 110.05371 * 306.41507 * 3 2 1 5 5 C 1.54261 * 110.03160 * 67.83112 * 3 2 1 6 6 C 1.54893 * 104.19379 * 142.89392 * 5 3 2 7 7 C 1.54891 * 102.74992 * 322.05717 * 6 5 3 8 8 H 1.09001 * 110.60033 * 279.21146 * 7 6 5 9 9 N 1.46892 * 110.48648 * 156.62064 * 7 6 5 10 10 C 1.46903 * 111.00167 * 59.27922 * 9 7 6 11 11 C 1.46900 * 110.99866 * 183.23128 * 9 7 6 12 12 C 1.53001 * 109.47099 * 169.99679 * 11 9 7 13 13 C 1.53001 * 109.47382 * 179.97438 * 12 11 9 14 14 S 1.80993 * 109.47497 * 180.02562 * 13 12 11 15 15 C 1.76194 * 100.00242 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99947 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99692 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47044 * 90.00655 * 19 17 15 21 21 H 1.48501 * 109.47072 * 210.00051 * 19 17 15 22 22 H 1.48496 * 109.47546 * 330.00181 * 19 17 15 23 23 C 1.53877 * 110.02896 * 184.99902 * 3 2 1 24 24 H 1.08995 * 109.47426 * 300.00583 * 1 2 3 25 25 H 1.09003 * 109.46984 * 60.00079 * 1 2 3 26 26 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08995 * 110.49022 * 261.56873 * 5 3 2 28 28 H 1.08997 * 110.48932 * 24.21818 * 5 3 2 29 29 H 1.08998 * 110.75743 * 203.74400 * 6 5 3 30 30 H 1.09002 * 110.75680 * 80.37192 * 6 5 3 31 31 H 1.09001 * 109.46802 * 188.38599 * 10 9 7 32 32 H 1.08995 * 109.46843 * 68.38417 * 10 9 7 33 33 H 1.08994 * 109.47049 * 308.38230 * 10 9 7 34 34 H 1.08998 * 109.47358 * 289.99801 * 11 9 7 35 35 H 1.09004 * 109.47398 * 50.00557 * 11 9 7 36 36 H 1.09000 * 109.47630 * 300.00282 * 12 11 9 37 37 H 1.09000 * 109.46941 * 60.00439 * 12 11 9 38 38 H 1.09000 * 109.47092 * 300.00763 * 13 12 11 39 39 H 1.09000 * 109.46600 * 60.00382 * 13 12 11 40 40 H 0.97006 * 119.99902 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.02847 * 121.42933 * 23 3 2 42 42 H 1.09002 * 110.07179 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7139 2.2684 -0.8240 5 6 1.8081 2.4054 1.3421 6 6 2.9275 3.4352 1.6345 7 6 4.2016 2.7037 1.1440 8 1 4.5518 1.9971 1.8965 9 7 5.2574 3.6719 0.8189 10 6 5.6030 4.4874 1.9909 11 6 6.4446 2.9950 0.2800 12 6 7.4174 4.0370 -0.2757 13 6 8.6542 3.3321 -0.8364 14 16 9.8054 4.5647 -1.4931 15 6 11.0972 3.5074 -2.0567 16 1 11.0102 2.4375 -1.9373 17 6 12.2273 4.0494 -2.6533 18 7 13.1920 3.2594 -3.0748 19 14 12.3781 5.8998 -2.8593 20 1 13.0370 6.4791 -1.6611 21 1 13.1920 6.1989 -4.0648 22 1 11.0256 6.4924 -3.0156 23 6 3.7439 1.9571 -0.1260 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.8448 2.9063 1.2455 28 1 1.7696 1.6506 2.1275 29 1 2.9897 3.6455 2.7022 30 1 2.7664 4.3523 1.0679 31 1 6.2752 5.2906 1.6892 32 1 6.0950 3.8623 2.7361 33 1 4.6951 4.9142 2.4170 34 1 6.9323 2.4296 1.0741 35 1 6.1447 2.3160 -0.5182 36 1 6.9298 4.6025 -1.0697 37 1 7.7173 4.7161 0.5224 38 1 9.1417 2.7669 -0.0421 39 1 8.3546 2.6528 -1.6344 40 1 13.9816 3.6381 -3.4921 41 1 3.9743 2.5501 -1.0111 42 1 4.2378 0.9874 -0.1876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252368566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = -21.660608 kcal Electronic energy + Delta-G solvation = -18461.344145 eV Core-core repulsion = 15692.757211 eV Total energy + Delta-G solvation = -2768.586934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31858 -36.17736 -32.66086 -32.41122 -29.65174 -29.23227 -27.96866 -26.65673 -25.63741 -23.72676 -21.14859 -20.68890 -19.93443 -17.46056 -16.95932 -16.49569 -15.58772 -15.28623 -15.05436 -14.90218 -14.34906 -14.07185 -13.80453 -13.71878 -13.61025 -13.41449 -12.83234 -12.47387 -12.34395 -12.27090 -11.95129 -11.61605 -11.46074 -11.28823 -11.20278 -11.14999 -11.03178 -11.01545 -10.87721 -10.32703 -10.10171 -10.08460 -9.74380 -8.98517 -8.53582 -8.39897 -7.97958 -6.91608 -6.26278 -3.98171 1.39002 2.25016 3.02632 3.31521 3.47312 3.55921 3.83914 4.09835 4.22803 4.33700 4.76776 4.77053 4.82508 4.84787 4.93711 5.05697 5.09072 5.11415 5.12857 5.22640 5.28285 5.31130 5.35876 5.48008 5.49291 5.57372 5.64100 5.68073 5.77362 5.86025 5.88431 5.89607 5.99164 6.03559 6.27905 6.51365 6.67940 7.01329 7.05889 7.97578 8.46724 9.19698 10.83270 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.002685 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.310421 B =10426.543605 C =11061.245512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.263 6.263 3 C -0.051 4.051 4 H 0.090 0.910 5 C -0.119 4.119 6 C -0.112 4.112 7 C 0.081 3.919 8 H 0.049 0.951 9 N -0.534 5.534 10 C 0.020 3.980 11 C 0.057 3.943 12 C -0.096 4.096 13 C -0.082 4.082 14 S -0.216 6.216 15 C -0.501 4.501 16 H 0.088 0.912 17 C 0.091 3.909 18 N -0.883 5.883 19 Si 0.862 3.138 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.237 1.237 23 C -0.097 4.097 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.249 -1.681 10.062 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.036 6.036 3 C -0.180 4.180 4 H 0.108 0.892 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.028 4.028 8 H 0.066 0.934 9 N -0.258 5.258 10 C -0.128 4.128 11 C -0.072 4.072 12 C -0.135 4.135 13 C -0.231 4.231 14 S 0.012 5.988 15 C -0.649 4.649 16 H 0.106 0.894 17 C -0.117 4.117 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.161 1.161 23 C -0.135 4.135 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.655 -1.163 9.537 27.395 hybrid contribution -0.037 -0.265 0.430 0.506 sum -25.692 -1.428 9.968 27.595 Atomic orbital electron populations 1.23359 0.94705 1.06278 1.04800 1.87057 1.06979 1.11729 1.97844 1.23786 1.00351 0.92839 1.01064 0.89164 1.22753 0.98781 0.98658 0.95720 1.22553 0.93131 0.98481 1.00940 1.22453 0.91832 0.92781 0.95708 0.93352 1.62121 1.09255 1.23465 1.30963 1.22445 1.01115 0.97878 0.91339 1.22224 0.89833 0.96304 0.98880 1.21323 0.93697 0.97529 1.00938 1.23016 0.97330 1.00676 1.02068 1.84136 1.20845 1.15880 1.77935 1.22133 1.02854 0.94981 1.44923 0.89446 1.24806 0.94434 0.98729 0.93770 1.69941 1.07760 1.35413 1.38834 0.86662 0.80792 0.85299 0.78548 1.19418 1.20140 1.16125 1.22037 0.91375 1.00698 0.99430 0.90580 0.90612 0.88328 0.91285 0.90287 0.91366 0.90057 0.90700 0.95687 0.91541 0.94813 0.90583 0.90721 0.91602 0.91692 0.91400 0.92006 0.89074 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.64 101.05 1.08 0.32 16 2 S -0.26 -2.44 21.33 -107.50 -2.29 -4.73 16 3 C -0.05 -0.43 3.42 -25.61 -0.09 -0.52 16 4 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -0.85 6.26 -25.07 -0.16 -1.01 16 6 C -0.11 -0.88 5.19 -24.74 -0.13 -1.01 16 7 C 0.08 0.80 2.58 -66.06 -0.17 0.63 16 8 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 9 N -0.53 -6.07 4.59 -232.90 -1.07 -7.14 16 10 C 0.02 0.21 9.10 60.07 0.55 0.76 16 11 C 0.06 0.74 4.82 -3.82 -0.02 0.72 16 12 C -0.10 -1.50 5.14 -26.73 -0.14 -1.64 16 13 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 14 S -0.22 -5.33 19.41 -107.50 -2.09 -7.41 16 15 C -0.50 -14.73 10.04 30.94 0.31 -14.42 16 16 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 17 C 0.09 2.68 5.50 -17.43 -0.10 2.59 16 18 N -0.88 -27.06 13.97 55.49 0.78 -26.28 16 19 Si 0.86 21.76 27.74 -169.99 -4.71 17.05 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 23 C -0.10 -0.94 4.82 -25.61 -0.12 -1.07 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.58 7.81 -51.93 -0.41 0.18 16 29 H 0.07 0.49 7.76 -51.93 -0.40 0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 6.69 -51.93 -0.35 0.48 16 32 H 0.02 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.07 0.58 6.59 -51.93 -0.34 0.24 16 34 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.08 0.98 6.79 -51.93 -0.35 0.63 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.02 6.65 -51.93 -0.35 0.68 16 38 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 39 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 40 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 42 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -30.89 352.83 -10.49 -41.38 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.64 Total: -2.14 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 1.23 Total: -16.04 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: -0.29 Total: -33.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -4.38 Total: -12.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.89 -10.49 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252368566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.716 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds