Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99919 * 2 1 4 4 H 1.09000 * 110.05371 * 306.41507 * 3 2 1 5 5 C 1.54261 * 110.03160 * 67.83112 * 3 2 1 6 6 C 1.54893 * 104.19379 * 142.89392 * 5 3 2 7 7 C 1.54891 * 102.74992 * 322.05717 * 6 5 3 8 8 H 1.09001 * 110.60033 * 279.21146 * 7 6 5 9 9 N 1.46892 * 110.48648 * 156.62064 * 7 6 5 10 10 C 1.46903 * 111.00167 * 59.27922 * 9 7 6 11 11 C 1.46900 * 110.99866 * 183.23128 * 9 7 6 12 12 C 1.53001 * 109.47099 * 169.99679 * 11 9 7 13 13 C 1.53001 * 109.47382 * 179.97438 * 12 11 9 14 14 S 1.80993 * 109.47497 * 180.02562 * 13 12 11 15 15 C 1.76194 * 100.00242 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99947 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99692 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47044 * 90.00655 * 19 17 15 21 21 H 1.48501 * 109.47072 * 210.00051 * 19 17 15 22 22 H 1.48496 * 109.47546 * 330.00181 * 19 17 15 23 23 C 1.53877 * 110.02896 * 184.99902 * 3 2 1 24 24 H 1.08995 * 109.47426 * 300.00583 * 1 2 3 25 25 H 1.09003 * 109.46984 * 60.00079 * 1 2 3 26 26 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08995 * 110.49022 * 261.56873 * 5 3 2 28 28 H 1.08997 * 110.48932 * 24.21818 * 5 3 2 29 29 H 1.08998 * 110.75743 * 203.74400 * 6 5 3 30 30 H 1.09002 * 110.75680 * 80.37192 * 6 5 3 31 31 H 1.09001 * 109.46802 * 188.38599 * 10 9 7 32 32 H 1.08995 * 109.46843 * 68.38417 * 10 9 7 33 33 H 1.08994 * 109.47049 * 308.38230 * 10 9 7 34 34 H 1.08998 * 109.47358 * 289.99801 * 11 9 7 35 35 H 1.09004 * 109.47398 * 50.00557 * 11 9 7 36 36 H 1.09000 * 109.47630 * 300.00282 * 12 11 9 37 37 H 1.09000 * 109.46941 * 60.00439 * 12 11 9 38 38 H 1.09000 * 109.47092 * 300.00763 * 13 12 11 39 39 H 1.09000 * 109.46600 * 60.00382 * 13 12 11 40 40 H 0.97006 * 119.99902 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.02847 * 121.42933 * 23 3 2 42 42 H 1.09002 * 110.07179 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7139 2.2684 -0.8240 5 6 1.8081 2.4054 1.3421 6 6 2.9275 3.4352 1.6345 7 6 4.2016 2.7037 1.1440 8 1 4.5518 1.9971 1.8965 9 7 5.2574 3.6719 0.8189 10 6 5.6030 4.4874 1.9909 11 6 6.4446 2.9950 0.2800 12 6 7.4174 4.0370 -0.2757 13 6 8.6542 3.3321 -0.8364 14 16 9.8054 4.5647 -1.4931 15 6 11.0972 3.5074 -2.0567 16 1 11.0102 2.4375 -1.9373 17 6 12.2273 4.0494 -2.6533 18 7 13.1920 3.2594 -3.0748 19 14 12.3781 5.8998 -2.8593 20 1 13.0370 6.4791 -1.6611 21 1 13.1920 6.1989 -4.0648 22 1 11.0256 6.4924 -3.0156 23 6 3.7439 1.9571 -0.1260 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.8448 2.9063 1.2455 28 1 1.7696 1.6506 2.1275 29 1 2.9897 3.6455 2.7022 30 1 2.7664 4.3523 1.0679 31 1 6.2752 5.2906 1.6892 32 1 6.0950 3.8623 2.7361 33 1 4.6951 4.9142 2.4170 34 1 6.9323 2.4296 1.0741 35 1 6.1447 2.3160 -0.5182 36 1 6.9298 4.6025 -1.0697 37 1 7.7173 4.7161 0.5224 38 1 9.1417 2.7669 -0.0421 39 1 8.3546 2.6528 -1.6344 40 1 13.9816 3.6381 -3.4921 41 1 3.9743 2.5501 -1.0111 42 1 4.2378 0.9874 -0.1876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252368566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -39.247279 kcal Electronic energy + Delta-G solvation = -18462.106761 eV Core-core repulsion = 15692.757211 eV Total energy + Delta-G solvation = -2769.349550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12438 -37.09049 -34.69345 -33.88310 -30.28818 -29.85891 -28.70050 -28.05899 -27.55660 -24.81984 -22.21554 -21.48081 -20.76190 -19.61626 -17.68486 -17.34012 -17.10793 -16.47517 -16.44517 -16.11292 -15.47341 -15.09324 -14.90914 -14.70675 -14.44696 -14.27284 -14.12470 -13.74438 -13.45371 -13.39657 -13.02469 -12.95849 -12.80994 -12.63378 -12.53284 -12.08485 -11.97109 -11.90850 -11.82224 -11.72937 -11.53674 -11.43365 -11.16545 -10.73798 -10.57077 -9.31430 -8.99564 -8.68481 -8.52416 -6.23769 0.77435 1.12258 1.31921 1.48003 1.66512 1.73797 2.24793 2.67634 2.85480 2.90414 3.41151 3.56149 3.93127 4.10902 4.14861 4.24590 4.30355 4.34581 4.35635 4.37844 4.41594 4.44608 4.49275 4.60341 4.63347 4.71375 4.76941 4.81545 4.88002 4.90780 5.00865 5.08262 5.12800 5.15258 5.17863 5.28896 5.36436 5.69139 6.06883 6.09414 6.18366 6.91442 8.60837 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.002685 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.310421 B =10426.543605 C =11061.245512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.040 4.040 4 H 0.096 0.904 5 C -0.111 4.111 6 C -0.105 4.105 7 C 0.081 3.919 8 H 0.041 0.959 9 N -0.537 5.537 10 C 0.019 3.981 11 C 0.066 3.934 12 C -0.082 4.082 13 C -0.070 4.070 14 S -0.217 6.217 15 C -0.523 4.523 16 H 0.048 0.952 17 C 0.036 3.964 18 N -0.923 5.923 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.228 1.228 23 C -0.096 4.096 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.277 0.723 41 H 0.082 0.918 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.564 0.079 10.965 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.095 6.095 3 C -0.169 4.169 4 H 0.114 0.886 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.028 4.028 8 H 0.059 0.941 9 N -0.261 5.261 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.219 4.219 14 S 0.011 5.989 15 C -0.671 4.671 16 H 0.067 0.933 17 C -0.169 4.169 18 N -0.561 5.561 19 Si 0.748 3.252 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.151 1.151 23 C -0.135 4.135 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.982 0.590 10.447 29.874 hybrid contribution 0.611 -0.947 0.181 1.141 sum -27.370 -0.357 10.627 29.363 Atomic orbital electron populations 1.23391 0.91310 1.07152 1.05858 1.87273 1.10825 1.13385 1.98005 1.23726 0.99151 0.91849 1.02169 0.88604 1.22712 0.99359 0.98315 0.94685 1.22520 0.91941 0.98320 1.01585 1.22499 0.92161 0.92643 0.95485 0.94056 1.62106 1.08582 1.23698 1.31736 1.22497 1.02038 0.97466 0.90877 1.22027 0.90119 0.95399 0.98852 1.21193 0.92223 0.97810 1.00850 1.23079 0.97584 0.99564 1.01679 1.83798 1.20197 1.16763 1.78113 1.22352 1.05075 0.94238 1.45429 0.93321 1.25819 0.93911 1.03937 0.93195 1.70044 1.08583 1.37846 1.39651 0.85686 0.81385 0.78898 0.79200 1.18520 1.18713 1.15148 1.21991 0.92612 0.99750 0.99129 0.89251 0.89760 0.87580 0.89384 0.90426 0.90158 0.89996 0.91355 0.95775 0.89517 0.95039 0.90692 0.90826 0.91107 0.92004 0.91767 0.91384 0.89991 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.64 113.37 1.21 0.09 16 2 S -0.32 -5.72 21.33 -56.49 -1.21 -6.92 16 3 C -0.04 -0.61 3.42 31.32 0.11 -0.50 16 4 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 5 C -0.11 -1.30 6.26 31.67 0.20 -1.10 16 6 C -0.10 -1.37 5.19 31.89 0.17 -1.21 16 7 C 0.08 1.47 2.58 45.99 0.12 1.59 16 8 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 9 N -0.54 -11.36 4.59 -890.75 -4.09 -15.44 16 10 C 0.02 0.35 9.10 127.69 1.16 1.52 16 11 C 0.07 1.66 4.82 86.30 0.42 2.07 16 12 C -0.08 -2.46 5.14 30.60 0.16 -2.31 16 13 C -0.07 -2.74 5.67 71.98 0.41 -2.33 16 14 S -0.22 -10.61 19.41 -56.49 -1.10 -11.71 16 15 C -0.52 -31.48 10.04 67.96 0.68 -30.79 16 16 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 17 C 0.04 2.14 5.50 84.86 0.47 2.61 16 18 N -0.92 -57.67 13.97 21.65 0.30 -57.37 16 19 Si 0.93 44.64 27.74 68.60 1.90 46.54 16 20 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.23 -10.56 6.74 99.48 0.67 -9.89 16 23 C -0.10 -1.81 4.82 31.32 0.15 -1.66 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.97 7.81 -2.39 -0.02 0.95 16 29 H 0.08 0.89 7.76 -2.39 -0.02 0.87 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.36 6.69 -2.39 -0.02 1.35 16 32 H 0.02 0.45 8.09 -2.39 -0.02 0.43 16 33 H 0.09 1.26 6.59 -2.39 -0.02 1.24 16 34 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.07 1.91 6.79 -2.38 -0.02 1.89 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.08 6.65 -2.39 -0.02 2.07 16 38 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.28 15.89 8.31 -92.70 -0.77 15.12 16 41 H 0.08 1.69 7.85 -2.39 -0.02 1.67 16 42 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 Total: -1.00 -67.19 352.83 1.98 -65.21 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.92 Total: 11.72 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 5.24 Total: -32.03 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -3.78 Total: -72.81 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -16.33 SS G_CDS: -2.30 Total: -18.63 kcal Total: -67.19 1.98 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252368566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.963 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds