Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81409 * 102.99903 * 2 1 4 4 H 1.08998 * 110.53769 * 56.15446 * 3 2 1 5 5 C 1.54889 * 110.48471 * 293.54437 * 3 2 1 6 6 C 1.54887 * 102.91329 * 203.47262 * 5 3 2 7 7 C 1.54260 * 104.19699 * 37.84935 * 6 5 3 8 8 H 1.08995 * 110.03193 * 95.72164 * 7 6 5 9 9 N 1.46903 * 110.03114 * 217.10811 * 7 6 5 10 10 C 1.46899 * 110.99792 * 305.44078 * 9 7 6 11 11 C 1.46910 * 110.99696 * 181.49284 * 9 7 6 12 12 C 1.53002 * 109.46869 * 189.99765 * 11 9 7 13 13 C 1.52991 * 109.46974 * 179.97438 * 12 11 9 14 14 S 1.81004 * 109.47182 * 180.02562 * 13 12 11 15 15 C 1.76198 * 100.00167 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47002 * 89.99953 * 19 17 15 21 21 H 1.48499 * 109.47304 * 209.99782 * 19 17 15 22 22 H 1.48504 * 109.47215 * 330.00114 * 19 17 15 23 23 C 1.53873 * 106.60046 * 336.39065 * 7 6 5 24 24 H 1.08998 * 109.47085 * 300.00356 * 1 2 3 25 25 H 1.08999 * 109.46989 * 60.00426 * 1 2 3 26 26 H 1.09001 * 109.46710 * 179.97438 * 1 2 3 27 27 H 1.09004 * 110.75726 * 85.06215 * 5 3 2 28 28 H 1.09002 * 110.75509 * 321.87820 * 5 3 2 29 29 H 1.08998 * 110.48560 * 156.52795 * 6 5 3 30 30 H 1.09000 * 110.48334 * 279.03857 * 6 5 3 31 31 H 1.08994 * 109.47032 * 54.98445 * 10 9 7 32 32 H 1.09001 * 109.46875 * 174.99124 * 10 9 7 33 33 H 1.09006 * 109.47234 * 294.98243 * 10 9 7 34 34 H 1.09000 * 109.46915 * 309.99224 * 11 9 7 35 35 H 1.08997 * 109.47257 * 69.99906 * 11 9 7 36 36 H 1.08995 * 109.46902 * 300.00210 * 12 11 9 37 37 H 1.09003 * 109.47190 * 59.99326 * 12 11 9 38 38 H 1.09002 * 109.47641 * 299.99622 * 13 12 11 39 39 H 1.09001 * 109.47429 * 60.00344 * 13 12 11 40 40 H 0.97001 * 120.00156 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.03377 * 119.28125 * 23 7 6 42 42 H 1.08999 * 110.03365 * 240.71411 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7542 2.2681 0.8477 5 6 1.7793 2.4261 -1.3302 6 6 2.6979 3.6697 -1.4234 7 6 4.0542 3.1801 -0.8755 8 1 4.7019 2.8773 -1.6982 9 7 4.6967 4.2467 -0.0959 10 6 4.8164 5.4782 -0.8877 11 6 6.0076 3.8146 0.4069 12 6 6.5330 4.8429 1.4107 13 6 7.8980 4.3926 1.9348 14 16 8.5193 5.6088 3.1228 15 6 10.0561 4.8609 3.5510 16 1 10.3452 3.9237 3.0986 17 6 10.8952 5.4761 4.4696 18 7 10.5431 6.6185 5.0206 19 14 12.5242 4.6829 4.9241 20 1 13.5846 5.1680 4.0045 21 1 12.8775 5.0429 6.3208 22 1 12.4056 3.2071 4.8082 23 6 3.7527 1.9736 0.0307 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7313 2.7225 -1.2844 28 1 1.9528 1.7539 -2.1705 29 1 2.7991 3.9924 -2.4595 30 1 2.3061 4.4802 -0.8088 31 1 3.8344 5.7655 -1.2635 32 1 5.2131 6.2764 -0.2602 33 1 5.4907 5.3066 -1.7268 34 1 5.9075 2.8464 0.8975 35 1 6.7061 3.7297 -0.4255 36 1 6.6331 5.8111 0.9201 37 1 5.8345 4.9280 2.2431 38 1 7.7975 3.4245 2.4255 39 1 8.5968 4.3074 1.1026 40 1 11.1297 7.0487 5.6623 41 1 4.2536 1.0845 -0.3523 42 1 4.0830 2.1794 1.0488 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252368567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -19.919678 kcal Electronic energy + Delta-G solvation = -18443.902606 eV Core-core repulsion = 15675.391164 eV Total energy + Delta-G solvation = -2768.511442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.33732 -36.05423 -32.57920 -32.36498 -29.63191 -29.19542 -27.91635 -26.57554 -25.51989 -23.61031 -21.24468 -20.63417 -19.72839 -17.45271 -17.01248 -16.46886 -15.42024 -15.32043 -14.90378 -14.78001 -14.27094 -14.04920 -13.84070 -13.74212 -13.57847 -13.30074 -12.85314 -12.39673 -12.13345 -12.02759 -11.88812 -11.52725 -11.35960 -11.21309 -11.07572 -11.06025 -11.04424 -11.01178 -10.71434 -10.57841 -10.21779 -10.08882 -9.49678 -9.03535 -8.33834 -8.26820 -7.94941 -6.49863 -6.20443 -3.90319 1.42454 2.29798 3.23046 3.24020 3.30738 3.55352 3.90893 4.13335 4.25162 4.27701 4.79377 4.80775 4.85837 4.96918 5.11938 5.14171 5.15341 5.17280 5.24462 5.32704 5.34573 5.38282 5.39946 5.51845 5.57156 5.63539 5.71526 5.77201 5.82187 5.90551 5.93452 5.97506 6.00497 6.14751 6.38998 6.62753 6.79022 7.07131 7.12475 7.62932 8.39118 9.25858 10.87750 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.002644 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.304931 B =10587.686512 C =11288.841065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.052 4.052 4 H 0.094 0.906 5 C -0.117 4.117 6 C -0.115 4.115 7 C 0.084 3.916 8 H 0.045 0.955 9 N -0.535 5.535 10 C 0.019 3.981 11 C 0.056 3.944 12 C -0.093 4.093 13 C -0.112 4.112 14 S -0.133 6.133 15 C -0.515 4.515 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.096 4.096 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.814 -8.735 -14.098 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.181 4.181 4 H 0.112 0.888 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.026 4.026 8 H 0.063 0.937 9 N -0.259 5.259 10 C -0.129 4.129 11 C -0.073 4.073 12 C -0.131 4.131 13 C -0.262 4.262 14 S 0.095 5.905 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.135 4.135 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.858 -8.437 -13.163 25.274 hybrid contribution 1.305 -0.784 -0.771 1.707 sum -18.553 -9.221 -13.935 24.968 Atomic orbital electron populations 1.23351 0.94536 1.06251 1.04854 1.86930 1.07120 1.11686 1.97881 1.24042 1.00333 0.92529 1.01155 0.88808 1.22836 0.99360 0.97186 0.96262 1.22467 0.94235 0.97824 1.00884 1.22227 0.95230 0.91213 0.93912 0.93658 1.62187 1.22395 1.04014 1.37302 1.22461 1.01036 0.92958 0.96447 1.22257 0.87999 0.99474 0.97564 1.21267 0.95517 0.98000 0.98364 1.23232 0.98053 1.02913 1.01962 1.84619 1.23723 1.30927 1.51218 1.22692 1.03794 1.10314 1.29551 0.91002 1.25016 0.98633 0.94966 0.95225 1.70025 1.37054 1.15853 1.27637 0.86172 0.82124 0.79455 0.77809 1.20309 1.20757 1.19683 1.22091 0.92092 0.97260 1.02050 0.90547 0.90582 0.88340 0.91381 0.90295 0.91452 0.90026 0.91481 0.90566 0.95821 0.90682 0.94988 0.91671 0.90830 0.92162 0.92419 0.92343 0.90938 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.63 101.05 1.07 0.29 16 2 S -0.26 -2.53 21.66 -107.50 -2.33 -4.86 16 3 C -0.05 -0.46 3.39 -24.97 -0.08 -0.55 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.12 -0.88 6.20 -24.74 -0.15 -1.03 16 6 C -0.11 -0.94 5.08 -25.08 -0.13 -1.06 16 7 C 0.08 0.84 2.67 -66.60 -0.18 0.67 16 8 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 9 N -0.53 -6.34 4.52 -233.54 -1.06 -7.40 16 10 C 0.02 0.21 9.02 60.06 0.54 0.75 16 11 C 0.06 0.76 4.74 -3.82 -0.02 0.74 16 12 C -0.09 -1.54 5.14 -26.73 -0.14 -1.68 16 13 C -0.11 -2.30 5.67 37.15 0.21 -2.09 16 14 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 15 C -0.52 -14.97 9.50 30.94 0.29 -14.67 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 19 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.10 -0.98 5.43 -25.51 -0.14 -1.12 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.71 7.41 -51.93 -0.38 0.32 16 31 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 32 H 0.08 0.89 6.52 -51.93 -0.34 0.56 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 1.01 6.40 -51.93 -0.33 0.67 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.06 1.09 6.57 -51.93 -0.34 0.74 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 0.76 7.80 -51.93 -0.40 0.36 16 42 H 0.09 1.03 6.77 -51.93 -0.35 0.68 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -30.93 354.38 -10.97 -41.90 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.52 Total: -2.55 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 1.19 Total: -17.83 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.32 Total: -32.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -4.63 Total: -10.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.93 -10.97 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252368567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.977 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds