Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81409 * 102.99903 * 2 1 4 4 H 1.08998 * 110.53769 * 56.15446 * 3 2 1 5 5 C 1.54889 * 110.48471 * 293.54437 * 3 2 1 6 6 C 1.54887 * 102.91329 * 203.47262 * 5 3 2 7 7 C 1.54260 * 104.19699 * 37.84935 * 6 5 3 8 8 H 1.08995 * 110.03193 * 95.72164 * 7 6 5 9 9 N 1.46903 * 110.03114 * 217.10811 * 7 6 5 10 10 C 1.46899 * 110.99792 * 305.44078 * 9 7 6 11 11 C 1.46910 * 110.99696 * 181.49284 * 9 7 6 12 12 C 1.53002 * 109.46869 * 189.99765 * 11 9 7 13 13 C 1.52991 * 109.46974 * 179.97438 * 12 11 9 14 14 S 1.81004 * 109.47182 * 180.02562 * 13 12 11 15 15 C 1.76198 * 100.00167 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47002 * 89.99953 * 19 17 15 21 21 H 1.48499 * 109.47304 * 209.99782 * 19 17 15 22 22 H 1.48504 * 109.47215 * 330.00114 * 19 17 15 23 23 C 1.53873 * 106.60046 * 336.39065 * 7 6 5 24 24 H 1.08998 * 109.47085 * 300.00356 * 1 2 3 25 25 H 1.08999 * 109.46989 * 60.00426 * 1 2 3 26 26 H 1.09001 * 109.46710 * 179.97438 * 1 2 3 27 27 H 1.09004 * 110.75726 * 85.06215 * 5 3 2 28 28 H 1.09002 * 110.75509 * 321.87820 * 5 3 2 29 29 H 1.08998 * 110.48560 * 156.52795 * 6 5 3 30 30 H 1.09000 * 110.48334 * 279.03857 * 6 5 3 31 31 H 1.08994 * 109.47032 * 54.98445 * 10 9 7 32 32 H 1.09001 * 109.46875 * 174.99124 * 10 9 7 33 33 H 1.09006 * 109.47234 * 294.98243 * 10 9 7 34 34 H 1.09000 * 109.46915 * 309.99224 * 11 9 7 35 35 H 1.08997 * 109.47257 * 69.99906 * 11 9 7 36 36 H 1.08995 * 109.46902 * 300.00210 * 12 11 9 37 37 H 1.09003 * 109.47190 * 59.99326 * 12 11 9 38 38 H 1.09002 * 109.47641 * 299.99622 * 13 12 11 39 39 H 1.09001 * 109.47429 * 60.00344 * 13 12 11 40 40 H 0.97001 * 120.00156 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.03377 * 119.28125 * 23 7 6 42 42 H 1.08999 * 110.03365 * 240.71411 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7542 2.2681 0.8477 5 6 1.7793 2.4261 -1.3302 6 6 2.6979 3.6697 -1.4234 7 6 4.0542 3.1801 -0.8755 8 1 4.7019 2.8773 -1.6982 9 7 4.6967 4.2467 -0.0959 10 6 4.8164 5.4782 -0.8877 11 6 6.0076 3.8146 0.4069 12 6 6.5330 4.8429 1.4107 13 6 7.8980 4.3926 1.9348 14 16 8.5193 5.6088 3.1228 15 6 10.0561 4.8609 3.5510 16 1 10.3452 3.9237 3.0986 17 6 10.8952 5.4761 4.4696 18 7 10.5431 6.6185 5.0206 19 14 12.5242 4.6829 4.9241 20 1 13.5846 5.1680 4.0045 21 1 12.8775 5.0429 6.3208 22 1 12.4056 3.2071 4.8082 23 6 3.7527 1.9736 0.0307 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7313 2.7225 -1.2844 28 1 1.9528 1.7539 -2.1705 29 1 2.7991 3.9924 -2.4595 30 1 2.3061 4.4802 -0.8088 31 1 3.8344 5.7655 -1.2635 32 1 5.2131 6.2764 -0.2602 33 1 5.4907 5.3066 -1.7268 34 1 5.9075 2.8464 0.8975 35 1 6.7061 3.7297 -0.4255 36 1 6.6331 5.8111 0.9201 37 1 5.8345 4.9280 2.2431 38 1 7.7975 3.4245 2.4255 39 1 8.5968 4.3074 1.1026 40 1 11.1297 7.0487 5.6623 41 1 4.2536 1.0845 -0.3523 42 1 4.0830 2.1794 1.0488 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252368567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -37.016501 kcal Electronic energy + Delta-G solvation = -18444.643980 eV Core-core repulsion = 15675.391164 eV Total energy + Delta-G solvation = -2769.252816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18134 -37.01641 -34.61833 -33.81444 -30.31546 -29.84530 -28.69607 -27.97135 -27.40667 -24.77190 -22.24335 -21.61181 -20.57115 -19.55590 -17.78220 -17.32682 -16.90121 -16.54420 -16.33575 -15.99800 -15.63135 -15.04406 -14.91343 -14.57320 -14.43660 -14.19931 -14.00053 -13.61928 -13.38991 -13.18828 -12.96315 -12.88858 -12.73520 -12.61606 -12.51975 -12.18292 -11.99842 -11.91800 -11.83866 -11.75066 -11.51004 -11.28834 -11.14353 -10.76272 -10.32494 -9.28037 -8.67855 -8.67143 -8.37787 -6.14086 0.77548 1.30860 1.38890 1.48169 1.67479 1.73943 2.27820 2.90988 2.96247 3.32347 3.42429 3.57476 3.95365 4.10501 4.17615 4.24710 4.33793 4.34385 4.37582 4.38670 4.44911 4.46268 4.50456 4.59795 4.62681 4.73960 4.80177 4.81209 4.87045 4.92046 5.01797 5.06135 5.10918 5.17487 5.19969 5.29590 5.36603 5.39150 6.08426 6.17664 6.21250 7.04285 8.71664 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.002644 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.304931 B =10587.686512 C =11288.841065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.316 6.316 3 C -0.042 4.042 4 H 0.090 0.910 5 C -0.107 4.107 6 C -0.109 4.109 7 C 0.084 3.916 8 H 0.045 0.955 9 N -0.541 5.541 10 C 0.019 3.981 11 C 0.067 3.933 12 C -0.080 4.080 13 C -0.087 4.087 14 S -0.197 6.197 15 C -0.538 4.538 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.907 5.907 19 Si 0.994 3.006 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.264 1.264 23 C -0.095 4.095 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.272 0.728 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -9.575 -15.328 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.088 6.088 3 C -0.171 4.171 4 H 0.109 0.891 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.025 4.025 8 H 0.063 0.937 9 N -0.266 5.266 10 C -0.129 4.129 11 C -0.062 4.062 12 C -0.119 4.119 13 C -0.237 4.237 14 S 0.032 5.968 15 C -0.686 4.686 16 H 0.090 0.910 17 C -0.190 4.190 18 N -0.544 5.544 19 Si 0.816 3.184 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.188 1.188 23 C -0.134 4.134 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.684 -9.274 -14.405 26.857 hybrid contribution 1.458 -0.544 -0.423 1.613 sum -19.225 -9.818 -14.828 26.189 Atomic orbital electron populations 1.23395 0.91280 1.07221 1.05813 1.87103 1.10808 1.12851 1.98019 1.23964 0.99276 0.91851 1.02030 0.89141 1.22794 1.00122 0.96580 0.95211 1.22440 0.92868 0.97949 1.01522 1.22285 0.96145 0.90575 0.93513 0.93703 1.62147 1.21113 1.04946 1.38344 1.22494 1.02297 0.92030 0.96102 1.22032 0.89131 0.98283 0.96790 1.21138 0.93085 0.98907 0.98746 1.23156 0.99762 1.00787 0.99984 1.84621 1.23995 1.34329 1.53869 1.23035 1.04790 1.10589 1.30206 0.91023 1.26080 1.02715 0.95432 0.94812 1.70155 1.38700 1.17311 1.28192 0.85013 0.76871 0.78657 0.77846 1.19215 1.19827 1.18782 1.22042 0.93201 0.97179 1.01007 0.89961 0.89201 0.87390 0.89717 0.90138 0.89985 0.90178 0.89418 0.91814 0.95526 0.90570 0.94767 0.91726 0.91678 0.92103 0.92167 0.91943 0.91536 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.63 113.37 1.20 0.02 16 2 S -0.32 -5.75 21.66 -56.49 -1.22 -6.98 16 3 C -0.04 -0.71 3.39 31.74 0.11 -0.60 16 4 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.11 -1.35 6.20 31.88 0.20 -1.15 16 6 C -0.11 -1.50 5.08 31.67 0.16 -1.34 16 7 C 0.08 1.56 2.67 45.64 0.12 1.68 16 8 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 9 N -0.54 -12.17 4.52 -892.77 -4.04 -16.21 16 10 C 0.02 0.37 9.02 127.69 1.15 1.52 16 11 C 0.07 1.78 4.74 86.30 0.41 2.19 16 12 C -0.08 -2.64 5.14 30.59 0.16 -2.48 16 13 C -0.09 -3.60 5.67 71.98 0.41 -3.20 16 14 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16 15 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 16 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 17 C 0.01 0.84 5.49 84.86 0.47 1.30 16 18 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 19 Si 0.99 44.51 29.55 68.60 2.03 46.54 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 C -0.10 -1.88 5.43 31.39 0.17 -1.71 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.03 8.05 -2.39 -0.02 1.01 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.17 7.41 -2.39 -0.02 1.15 16 31 H 0.09 1.39 6.42 -2.39 -0.02 1.38 16 32 H 0.06 1.44 6.52 -2.39 -0.02 1.42 16 33 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.08 2.01 6.40 -2.39 -0.02 1.99 16 35 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 36 H 0.06 2.15 6.57 -2.39 -0.02 2.13 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 1.38 7.80 -2.39 -0.02 1.36 16 42 H 0.07 1.67 6.77 -2.39 -0.02 1.65 16 Total: -1.00 -67.09 354.38 2.00 -65.09 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.96 Total: 13.42 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 5.20 Total: -34.80 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -3.75 Total: -71.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -16.45 SS G_CDS: -2.43 Total: -18.89 kcal Total: -67.09 2.00 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252368567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.074 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds